Efficient multibeam sonar calibration and performance evaluation

Quantitative applications of mobile multibeam sonar in aquatic ecology and fisheries require accurate and efficient in-tank calibration methodologies. Calibration factors for a Simrad SM20 multibeam sonar are experimentally extracted thereby enabling sonar estimation of target strength and volume backscattering strength. Measured and modeled sonar characteristics are systematically compared and show good overall correlation. Due to the limited angular span of the sonar head array, well quantified sonar operation is restricted to an equatorial angular sector of only 80° (vs. rated 120°) in 'imaging' mode. In 'echo-sounder' mode, the 'high' power transmit setting appears to introduce artifacts. A routine in-tank measurement procedure is described which for given multibeam sonar minimizes the time required for quality multibeam calibration

Addressing the fear and consequences of stigmatization - a necessary step towards making HAART accessible to women in Tanzania: a qualitative study

<p>Abstract</p> <p>Background</p> <p>Highly Active Antiretroviral Therapy (HAART) has been available free of charge in Tanga, Tanzania since 2005. However we have found that a high percentage of women referred from prevention of mother-to-child transmission services to the Care and Treatment Clinics (CTC) for HAART never registered at the CTCs. Few studies have focused on the motivating and deterring factors to presenting for HAART particularly in relation to women. This study seeks to remedy this gap in knowledge.</p> <p>Methodology</p> <p>A qualitative approach using in-depth interviews and focus group discussions was chosen to understand these issues as perceived and interpreted by HIV infected women themselves.</p> <p>Results</p> <p>The main deterrent to presenting for treatment appears to be fear of stigmatization including fear of ostracism from the community, divorce and financial distress. Participants indicated that individual counselling and interaction with other people living with HIV encourages women, who are disinclined to present for HAART, to do so, and that placing the entrance to the CTC so as to provide discrete access increases the accessibility of the clinic.</p> <p>Conclusion</p> <p>Combating stigma in the community, although it is essential, will take time. Therefore necessary steps towards encouraging HIV infected women to seek treatment include reducing self-stigma, assisting them to form empowering relationships and to gain financial independence and emphasis by example of the beneficial effect of treatment for themselves and for their children. Furthermore ensuring a discrete location of the CTC can increase its perceived accessibility.</p

A Highly Selective Cc Chemokine Receptor (Ccr)8 Antagonist Encoded by the Poxvirus Molluscum Contagiosum

The MC148 CC chemokine from the human poxvirus molluscum contagiosum (MCV) was probed in parallel with viral macrophage inflammatory protein (vMIP)-II encoded by human herpesvirus 8 (HHV8) in 16 classified human chemokine receptors. In competition binding using radiolabeled endogenous chemokines as well as radiolabeled MC148, MC148 bound with high affinity only to CCR8. In calcium mobilization assays, MC148 had no effect on its own on any of the chemokine receptors, but in a dose-dependent manner blocked the stimulatory effect of the endogenous I-309 chemokine on CCR8 without affecting chemokine-induced signaling of any other receptor. In contrast, vMIP-II acted as an antagonist on 10 of the 16 chemokine receptors, covering all four classes: XCR, CCR, CXCR, and CX3CR. In chemotaxis assays, MC148 specifically blocked the I-309–induced response but, for example, not stromal cell–derived factor 1α, monocyte chemoattractant protein 1, or interleukin 8–induced chemotaxis. We thus concluded that the two viruses choose two different ways to block the chemokine system: HHV8 encodes the broad-spectrum chemokine antagonist vMIP-II, whereas MCV encodes a highly selective CCR8 antagonist, MC148, conceivably to interfere with monocyte invasion and dendritic cell function. Because of its pharmacological selectivity, the MC148 protein could be a useful tool in the delineation of the role played by CCR8 and its endogenous ligand, I-309

Cytomegalovirus-specific T-cells are associated with immune senescence, but not with systemic inflammation, in people living with HIV

Abstract In people living with HIV (PLWHIV), coinfection with cytomegalovirus (CMV) has been associated with inflammation, immunological ageing, and increased risk of severe non-AIDS related comorbidity. The effect of CMV-specific immune responses on systemic inflammation, immune activation and T-cell senescence was evaluated in 53 PLWHIV treated with combination antiretroviral therapy (cART). Activated-, terminally differentiated-, naïve-, and senescent T-cells were assessed by flow cytometry, and plasma levels of CMV IgG, interleukin-6, tumor necrosis factor-α, high-sensitivity C-reactive protein and soluble-CD14 were measured. In PLWHIV, expression of interleukin-2, tumor necrosis factor-α and interferon-γ was measured by intracellular-cytokine-staining after stimulation of T-cells with CMV-pp65, CMV-IE1, and CMV-gB. Increased CMV-specific T-cell responses were associated with a higher ratio of terminally differentiated/naïve CD8+ T-cells and with increased proportions of senescent CD8+ T-cells, but not with systemic inflammation or sCD14. Increased CMV-specific CD4+ T-cell responses were associated with increased proportions of activated CD8+ T-cells. In PLWHIV with expansion of CMV-specific T-cells or increased T-cell senescence, CMV-specific polyfunctionality was maintained. That the magnitude of the CMV-specific T-cell response was associated with a senescent immune phenotype, suggests that a dysregulated immune response against CMV may contribute to the immunological ageing often described in PLWHIV despite stable cART

Early Infant Diagnosis of HIV in Three Regions in Tanzania; Successes and Challenges.

By the end of 2009 an estimated 2.5 million children worldwide were living with HIV-1, mostly as a consequence of vertical transmission, and more than 90% of these children live in sub-Saharan Africa. In 2008 the World Health Organization (WHO), recommended early initiation of Highly Active Antiretroviral Therapy (HAART) to all HIV infected infants diagnosed within the first year of life, and since 2010, within the first two years of life, irrespective of CD4 count or WHO clinical stage. The study aims were to describe implementation of EID programs in three Tanzanian regions with differences in HIV prevalences and logistical set-up with regard to HIV DNA testing. Data were obtained by review of the prevention from mother to child transmission of HIV (PMTCT) registers from 2009-2011 at the Reproductive and Child Health Clinics (RCH) and from the databases from the Care and Treatment Clinics (CTC) in all the three regions; Kilimanjaro, Mbeya and Tanga. Statistical tests used were Poisson regression model and rank sum test. During the period of 2009 - 2011 a total of 4,860 exposed infants were registered from the reviewed sites, of whom 4,292 (88.3%) were screened for HIV infection. Overall proportion of tested infants in the three regions increased from 77.2% in 2009 to 97.8% in 2011. A total of 452 (10.5%) were found to be HIV infected (judged by the result of the first test). The prevalence of HIV infection among infants was higher in Mbeya when compared to Kilimanjaro region RR = 1.872 (95%CI = 1.408 - 2.543) p < 0.001. However sample turnaround time was significantly shorter in both Mbeya (2.7 weeks) and Tanga (5.0 weeks) as compared to Kilimanjaro (7.0 weeks), p=<0.001. A substantial of loss to follow-up (LTFU) was evident at all stages of EID services in the period of 2009 to 2011. Among the infants who were receiving treatment, 61% were found to be LFTU during the review period. The study showed an increase in testing of HIV exposed infants within the three years, there is large variations of HIV prevalence among the regions. Challenges like; sample turnaround time and LTFU must be overcome before this can translate into the intended goal of early initiation of lifelong lifesaving antiretroviral therapy for the infants

Tidal and thermal stresses drive seismicity along a major Ross Ice Shelf rift

Author Posting. © American Geophysical Union, 2019. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters, 46(12), (2019): 6644-6652, doi:10.1029/2019GL082842.Understanding deformation in ice shelves is necessary to evaluate the response of ice shelves to thinning. We study microseismicity associated with ice shelf deformation using nine broadband seismographs deployed near a rift on the Ross Ice Shelf. From December 2014 to November 2016, we detect 5,948 icequakes generated by rift deformation. Locations were determined for 2,515 events using a least squares grid‐search and double‐difference algorithms. Ocean swell, infragravity waves, and a significant tsunami arrival do not affect seismicity. Instead, seismicity correlates with tidal phase on diurnal time scales and inversely correlates with air temperature on multiday and seasonal time scales. Spatial variability in tidal elevation tilts the ice shelf, and seismicity is concentrated while the shelf slopes downward toward the ice front. During especially cold periods, thermal stress and embrittlement enhance fracture along the rift. We propose that thermal stress and tidally driven gravitational stress produce rift seismicity with peak activity in the winter.NSF grants PLR‐1142518, 1141916, and 1142126 supported S. D. Olinger and D. A. Wiens, R. C. Aster, and A. A. Nyblade respectively. NSF grant PLR‐1246151 supported P. D. Bromirski, P. Gerstoft, and Z. Chen. NSF grant OPP‐1744856 and CAL‐DPR‐C1670002 also supported P. D. Bromirski. NSF grant PLR‐1246416 supported R. A. Stephen. The Incorporated Research Institutions for Seismology (IRIS) and the PASSCAL Instrument Center at New Mexico Tech provided seismic instruments and deployment support. The RIS seismic data (network code XH) are archived at the IRIS Data Management Center (http://ds.iris.edu/ds/nodes/dmc/). S. D. Olinger catalogued and located icequakes, analyzed seismicity and environmental forcing, and drafted the manuscript. D. A. Wiens and B. P. Lipovsky provided significant contributions to the analysis and interpretation of results and to the manuscript text. D. A. Wiens, R. C. Aster, A. A. Nyblade, R. A. Stephen, P. Gerstoft, and P. D. Bromirski collaborated to design and obtain funding for the deployment. D. A. Wiens, R. C. Aster, R. A. Stephen, P. Gerstoft, P. D. Bromirski, and Z. Chen deployed and serviced seismographs in Antarctica. All authors provided valuable feedback, comments, and edits to the manuscript text. Special thanks to Patrick Shore for guidance throughout the research process.2019-11-2

Near-surface environmentally forced changes in the Ross Ice Shelf observed with ambient seismic noise

Author Posting. © American Geophysical Union, 2018. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 45 (2018): 11,187-11,196, doi:10.1029/2018GL079665.Continuous seismic observations across the Ross Ice Shelf reveal ubiquitous ambient resonances at frequencies >5 Hz. These firn‐trapped surface wave signals arise through wind and snow bedform interactions coupled with very low velocity structures. Progressive and long‐term spectral changes are associated with surface snow redistribution by wind and with a January 2016 regional melt event. Modeling demonstrates high spectral sensitivity to near‐surface (top several meters) elastic parameters. We propose that spectral peak changes arise from surface snow redistribution in wind events and to velocity drops reflecting snow lattice weakening near 0°C for the melt event. Percolation‐related refrozen layers and layer thinning may also contribute to long‐term spectral changes after the melt event. Single‐station observations are inverted for elastic structure for multiple stations across the ice shelf. High‐frequency ambient noise seismology presents opportunities for continuous assessment of near‐surface ice shelf or other firn environments.NSF Office of Polar Programs Grant Number: PLR-11425182019-04-1