The non-perturbative unquenched quark model

In recent years states in the quarkonium spectrum not expected in the naive quark model have appeared and created a lot of interest. In the theoretical side the study of the effect of meson-meson thresholds in the spectrum have been performed in different approximations. In a quark model framework, and in the spirit of the Cornell model, when a meson-meson threshold is included, the coupling to all the quark-antiquark states have to be considered. In practice only the closest states are included perturbatively. In this contribution we will present a framework in which we couple quark-antiquark states with meson-meson states non-perturbatively, taking into account effectively the coupling to all quark-antiquark states. The method will be applied to the study of the X(3872) and a comparison with the perturbative calculation will be performed

Obtaining foot bone structure applying global and adaptive thresholding

La descripción del comportamiento mecánico de tejidos duros mediante el empleo de modelos discretos pasa por diferentes etapas de análisis, que van desde el procesamiento digital de la imagen hasta la especificación de las propiedades físicas del tejido al modelo discreto. Para lograr un buen resultado es esencial la descomposición de esos modelos en sus partes constitutivas. En este trabajo se discute un método para la descripción geométrica de los huesos del pie a partir de una secuencia de imágenes (cortes) de tomografía computarizada (TC). La investigación propone la combinación de la umbralización global y de la adaptativa para la determinación del dominio geométrico de los huesos en cada corte, así como el análisis de las relaciones espaciales entre contornos en planos consecutivos a fin de obtener las isosuperficies de los huesos. Se propone un algoritmo semiautomático basado en 4 etapas: la lectura de los cortes de imágenes de TC; la determinación de los contornos que definen el tejido óseo presentes en cada corte; la formación de los volúmenes a través del agrupamiento de los contornos cuya relación espacial cumple un criterio determinado; y la eliminación de las isosuperficies no válidas. Como resultado se obtiene la definición de la mayoría de los huesos del pie cuyo rango de valores en la escala de Hounsfield es [–1.000; 1.383].The description of the mechanical behavior of hard tissues by means of discrete models goes through various stages of analysis, which range from digital image processing to the specification of tissues physical properties to the discrete model. To achieve good results it is essential to decompose these models into their constituent parts. In this paper we discuss a method for geometrical description of foot bones from a sequence of computed tomography (CT) images. This research proposes a combination between global and adaptive thresholdings to determine the geometric domain of bones in each slice and the analysis of the spatial relationships between contours in consecutive planes in order to obtain bones’ isosurfaces. The algorithm proposed is based on 4 stages: the reading of computed tomography (CT) images; the determination of the contours that define the bone tissue present on each slice; the grouping of contours whose relationship meet a given criteria; the elimination of non-valid volumes. As a result, it is possible to obtain the geometrical domain of a great number of foot bones whose range in the Hounsfield is [–1000; 1383].Peer Reviewe

Algorithm for defining skeletal structures in biomedical models

La descripción del comportamiento mecánico de tejidos duros mediante el empleo de modelos discretos pasa por diferentes etapas de análisis, desde el procesamiento digital de la imagen hasta la especificación de las propiedades físicas del tejido. Para ello, es necesario tener en cuenta un elemento clave: la descomposición del modelo en sus partes constitutivas. Se realizó un estudio bibliográfico de diversas propuestas para realizar la descomposición y se llegó a la conclusión de la inexistencia de una estrategia única. Existe un cúmulo de propuestas genéricas, pero estas no ofrecen una solución válida a los casos analizados, correspondientes a las articulaciones de la rodilla, la pelvis y el hombro. Por tanto, se propone un algoritmo para realizar la descomposición mediante el análisis de las relaciones espaciales entre los contornos presentes en planos consecutivos, que se basa en 4 etapas: la lectura de los cortes de imágenes de tomografía computarizada; la determinación de los contornos que definen el tejido óseo presente en cada corte; el agrupamiento de los contornos cuya relación espacial cumple un criterio determinado, y la eliminación de los volúmenes no válidos. Los resultados del algoritmo se compararon con otros obtenidos mediante el empleo de la librería Visualization ToolKit (VTK) y pyFormex, cuyos métodos se utilizan en la visualización y análisis de imágenes médicas y en la modelación de estructuras tridimensionales. Como resultado del algoritmo propuesto tenemos —bajo las mismas condiciones y en un corto tiempo de procesamiento— una descomposición de los modelos anatómicos superior a la realizada por VTK y pyFormex, con aproximadamente el 90% de confianza.Description of mechanical behavior of hard tissues by means of discrete models goes through various stages of analysis, which range from digital image processing to the specification of physical properties of tissue to the discrete model. This requires taking into account a key element: the decomposition of the model into its constituent parts. We conducted a bibliographic study of existing proposals for such decomposition, leading to the conclusion of the absence of a single strategy. There are several generic proposals, but these proved not to give a valid solution applicable to the cases examined corresponding to the articulations of the knee, hip and shoulder. In this paper we propose an algorithm to perform this decomposition by analyzing the spatial relationships between the contours present in consecutive planes. It is based on four stages: reading computer tomography (CT) slices; determining the contours that define bone tissue present on each slice; grouping of contours whose relationship meets a given criterion; and eliminating non-valid volumes. Results were compared with those obtained by means of Visualization ToolKit (VTK) and pyFormex, widely used in the visualization and analysis of medical imaging and modeling three-dimensional structures. As a main result, proposed algorithm under the same conditions and short processing time performs a better decomposition of anatomical models than the one made by VTK and pyFormex, with about a 90% of confidence.Peer Reviewe

The chemosensory systems of Vibrio cholerae

Vibrio cholerae, the causative agent of the acute diarrheal disease cholera, is able to thrive in diverse habitats such as natural water bodies and inside human hosts. To ensure their survival, these bacteria rely on chemosensory pathways to sense and respond to changing environmental conditions. These pathways constitute a highly sophisticated cellular control system in Bacteria and Archaea. Reflecting the complex life cycle of V. cholerae, this organism has three different chemosensory pathways that together contain over 50 proteins expressed under different environmental conditions. Only one of them is known to control motility, while the function of the other two remains to be discovered. Here, we provide an overview of the chemosensory systems in V. cholerae and the advances toward understanding their structure and function.Microbial Biotechnolog

Tissue distribution of lipid and fatty acid metabolism and transcription factors genes in adult Atlantic bluefin tuna (Thunnus thynnus L.)

To determine expression of the major lipid pathways in tissues of adult bluefin tuna 8 individuals were used for collecting samples for tissue expression of key lipid metabolism genes. Triplicate sets of samples of brain, gills, heart, kidney, spleen, liver, intestine, white muscle, red muscle, adipose tissue ovary and testis were collected. Expression of genes was determined by qPCR. Tissue expression profiles showed that PUFA biosynthetic pathway genes were expressed in all tissues examined, highest expression in brain, liver and testis. Elongase elovl5 showed higher expression than desaturase fads2d6 in all other tissues, with low expression of in red muscle and ovaries. Transcription factors, pparα and pparγ showed parallel expression, with adipose tissue with the highest relative copy number, followed by intestine>testis>liver. The expression of lxr was low in liver, with highest expression in testis, brain and kidney. Similarly, rxr was poorly expressed in liver with higher expression in muscle, spleen and brain. The rank order of expression of srebp1 was brain, testis, ovary, intestines, kidney, gill, liver, white muscle, spleen, heart and red muscle. For srebp2 the highest expression was shown in brain, testis and adipose with lowest expression in heart and white muscle. Expression of fabp2 was highest in intestine, brain and heart with lower levels in liver, red muscle, adipose and kidney. fabp4 showed highest expression in ovaries with liver showing the lowest. fabp7 showed highest expression levels in brain and testis with lowest values in liver. cptI expression was highest in brain and lowest in liver. Similarly, the relative copy number for fas was highest in brain followed by gonads, gill and liver, with white muscle showing lowest expression. The expression of aco was highest in adipose and intestine, followed by liver, kidney and brain. The expression of hmgcl was highest in ovary followed by adipose, brain and testis, with lowest expression in liver. Expression of lpl was highest in testis and lowest in ovary, with liver and white muscle, adipose, heart, gills and red muscle, kidney, intestine showing intermediate levels of expression. This research was supported by projects from the Junta de Andalucía, Proyecto de Excelencia de Promoción General del Conocimiento Ref. RNM 0733, and Programa Estatal de Investigación del Ministerio de Economía y Competitividad Ref. AGL2014-52003-C2-1-R. AQUACULTURE, ENDOCRINOLOGY AND TOXICOLOGY 218. VI IBERIAN CONGRESS OF ICHTHYOLOGY MURCIA, SPAIN 21st · 24th June P-04

Molecular aspects of lipid metabolism, digestibility and antioxidant status of Atlantic bluefin tuna (T. thynnus L.) larvae during first feeding

Atlantic bluefin tuna (Thunnus thynnus L.; ABT) larvae were fed on enriched rotifers Brachionus rotundiformis and copepod nauplii Acartia tonsa from first feeding to 15 days post hatching. Rotifers were enriched with five different commercial products: OG, MG, AG and RA plus selenium and vitamin E. Copepods (COP) were cultured with the algae Rhodomonas baltica. Metabolic processes were studied by determining the expression of 30 genes related to lipid metabolism (transcription factors, fatty acid metabolism and lipid homeostasis), antioxidant enzymes, myogenesis and digestive enzymes. Growth and development parameters and high expression of myogenesis genes myhc2 and tropo indicated that COP were better than enriched rotifers as live prey for first feeding ABT. COP and AG-fed larvae showed the lowest values for the transcription factors pparã and srebp2. The expression of fas showed differences among treatments, with highest relative expression in COP-fed larvae and those fed with RA rotifers. In relation to fatty acid catabolism, larvae fed RA had the highest aco expression levels, with the lowest observed in those fed COP. The expression profiles of lipid homeostasis genes showed that larvae fed COP had higher fabp2 and 4 expressions. Larvae fed AG showed the lowest lpl expression levels, with highest values observed in larvae fed OG. Regarding antioxidant enzyme gene expression, sod showed highest values in larvae fed COP and RA, with larvae fed MG rotifers showing lowest expression levels. A similar pattern was observed for the expression of cat and gpx1 and 4. The expression of genes for digestive enzymes showed that tryp expression levels were highest in COP-fed larvae but, in contrast, COP-fed larvae showed the lowest anpep and alp levels. ABT larvae fed AG displayed the lowest expression level of pla2. bal1 and bal2 presented similar expression patterns, with highest values in COP-fed ABT and lowest expression in larvae fed AG rotifers. Copepods were a superior live prey for first feeding ABT larvae compared to enriched rotifers, as indicated by the higher growth and flexion index achieved by COP-fed larvae, possibly reflecting the higher protein content of the copepods.This work was supported by the Consejería de Innovación, Ciencia y Empresa de la Junta de Andalucía, Proyecto de Excelencia de Promoción General del Conocimiento [Ref. RNM 733, 2012], and Programa Estatal de Investigación del Ministerio de Economía y Competitividad [Ref. AGL2014-52003-C2-1-R, 2014].Versión del edito

Development of feeds for juvenile Atlantic bluefin tuna (Thunnus thynnus, L): effect of lipid level and source

In conclusion, the present study suggests that ABT juveniles can be grown on inert extruded dry feeds that result in good fish growth and accumulation of the health-promoting fatty acid DHA. Furthermore, a blend of VO and KO could be used as the dietary lipid source up to a dietary lipid level of 15 % without affecting fish performance. The expression of lipid metabolism genes in ABT liver showed a different response to dietary lipid level/fatty acid profile, consistent with previous data indicating limited n-3 LC-PUFA biosynthetic capability in ABT. However, gene expression showed some differences between the two trials, which highlight how the genetic background of different batches of ABT juveniles could affect the regulation of metabolic gene expression and thus be a factor in weaning success. The expression of antioxidant enzymes was also altered by diet, related to dietary contents of antioxidant nutrients. Thus, further studies are required in order to fully elucidate the lipid and fatty acid requirements of this iconic species in relation to dietary sources and production cost

COPEPODS OR ROTIFERS? EVALUATING THE USE OF DIFFERENT FEEDING PROTOCOLS FOR LARVAE OF ATLANTIC BLUEFIN TUNA (Thunnus thynnus. L)

There are still many issues that require to be solved in larval rearing of Atlantic bluefin tuna (Thunnus thynnus; ABT) to prevent “mass-mortality” during this developmental stage. Initial data related to the feeding sequence of ABT larvae suggested that mortality observed during the first stages of life could be due partly to nutritional deficiencies. Previous studies demonstrated that copepods appeared to be a superior live prey compared to rotifers during the first two weeks of life. Our overarching aim was to evaluate different feeding strategies during first feeding of ABT larvae from a performance, compositional and molecular perspective. In order to do so, two groups of ABT larvae were fed with either copepod (Acartia tonsa; C) nauplii or rotifers (Brachionus rotundiformis; R) enriched with Algamac 3050® from mouth opening to 13 days after hatching (dah). After this, the group C-larvae was fed either Artemia enriched with Algamac 3050® (CA), Acartia nauplii and copepodites (CC) or sea bream (Sparus aurata) yolk-sac larvae (CY), while the R group passed on to being fed on Artermia enriched with Algamac 3050® (RA) up to 18 dah. After 13 dah, larvae fed C grew more than those fed R although there were no differences in survival. ABT larvae fed R accumulated highest eicosapentaenoate (EPA) but lowest docosahexaenoate (DHA) and total n-3 long-chain polyunsaturated fatty acids (LC-PUFA) than C-fed larvae, reflecting dietary contents. Indeed, there was no activation in the expression of the enzymes involved in LC-PUFA biosynthesis. However, the different live prey elicited regulation of transcription factor, digestive enzyme, lipid metabolism and oxidative stress genes. At 18 dah larvae fed CY and CA were the largest size with larvae fed RA displaying the lowest growth with no differences in survival among the dietary treatments. The highest DHA contents were found in ABT larvae fed CC and CY, whereas the lowest contents were found in RA-fed larvae. Indeed, RA-fed larvae showed the highest level of the intermediate product n-3 docosapentaenoate, which could be reflecting up-regulation in the biosynthetic pathway although this was not supported by gene expression data

Taurine metabolism and effects of inclusion levels in rotifer (Brachionus rotundiformis, Tschugunoff, 1921) on Atlantic bluefin tuna (Thunnus thynnus, L.) larvae

Taurine appears to be a crucial nutrient for teleosts, especially top predator species such as Atlantic bluefin tuna (Thunnus thynnus, L.; ABT). While dietary taurine supplementation has been highly recommended, there is a lack of studies on taurine assimilation and biosynthesis for this iconic species. The present study aims to provide insight into the molecular mechanisms involved in taurine biosynthesis and transport in ABT by studying tissue distribution and ontogenetic development of expression of cysteine dioxygenase (cdo), cysteine sulfinic acid decarboxylase (csad), 2-aminoethanethiol dioxygenase (ado) and taurine transporter (tauT) in response to graded levels of dietary taurine supplementation. The full open reading frame (ORF) for cdo and partial sequences for csad, ado and tauT were obtained, with the translated polypeptides being 202, 176, 166 and 324 amino acids, respectively. All three showed characteristics such as cupin motifs in Cdo and predicted N-glycosylation sites in Taut that are common to these genes in other species. Phylogenetic analysis showed that the ABT sequences clustered with sequences of other teleosts, and separately from mammals and molluscs. Tissue distribution varied, with adipose tissue, kidney, white muscle and testis/brain showing highest expression of cdo, csad, ado and tauT, respectively. Whole larvae expression of csad peaked at 15 dah, whereas the other genes generally increased throughout development to show highest expression at 25 dah. The nutritional trial was carried out by feeding ABT larvae from mouth opening to 14 days after hatching (dah) with rotifers (Brachionus rotundiformis) enriched with 4 different levels of taurine: 0.0 (tau0), 0.5 (tau0.5), 1.0 (tau1), and 2.0 g taurine per 106 rotifers (tau2). Rotifers effectively accumulated taurine with ABT larvae fed on treatment tau2 attaining the highest concentration of taurine. However, ABT larvae fed tau1 displayed higher growth and survival, and flexion index at 14 dah, than larvae fed the other taurine levels. Larvae fed tau1 also showed generally higher expression of tauT and cdo and digestive and antioxidant enzyme genes. While this study showed that larval ABT express taurine metabolism genes, suggesting possible synthesis that could contribute to the taurine pool in the fish, larval performance was enhanced by a level of dietary taurine (3.7 mg taurine g−1 rotifer) supplied by enrichment of rotifers at 1 g taurine per 106 rotifers.En prensa2,04