Trophic dynamics of methylmercury and trace elements in a remote Amazonian Lake.

peer reviewedInformation on pollutant trophodynamics can be crucial for public health, as contaminated food consumption may lead to deleterious effects. This study was performed in Puruzinho Lake, a remote body of water in the Brazilian Amazon from which a riparian human population obtains an important part of its animal protein intake. Samples from 92 individuals, comprising 13 species and four trophic guilds (iliophagous, planktivorous, omnivorous, and piscivorous fish) were analysed for the determination of trace elements (Fe, Cr, Mn, Ni, Zn, Ca, Sr, Cd, Sn, Tl and Pb) and methylmercury concentrations. Samples from the same individuals had already been analysed for stable isotope (SI) measurements (δ13C and δ15N) in a previous investigation and the SI data have been statistically treated with those generated in this study for the evaluation of trophic dynamics of contaminants. Methylmercury was the only analyte that biomagnified, presenting TMF values of 4.65 and 4.55 for total and resident ichthyofauna, respectively. Trace elements presented either trophic dilution or independence from the trophic position, constituting a behaviour that was coherent with that found in the scientific literature. The similarity between Ni behaviour through the trophic web to that of essential elements contributes to the discussion on the essentiality of this metal to fish. Considering the Non-cancer Risk Assessment, the calculated Target Hazard Quotient (THQ) values were higher than 1.0 for all analysed individuals for methylmercury, as well as for only one individual for nickel. No other analyte rendered THQ values higher than 1.0.14. Life below wate

The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics.

ABSTRACT: A global genome database of all of Earth’s species diversity could be a treasure trove of scientific discoveries. However, regardless of the major advances in genome sequencing technologies, only a tiny fraction of species have genomic information available. To contribute to a more complete planetary genomic database, scientists and institutions across the world have united under the Earth BioGenome Project (EBP), which plans to sequence and assemble high-quality reference genomes for all ∼1.5 million recognized eukaryotic species through a stepwise phased approach. As the initiative transitions into Phase II, where 150,000 species are to be sequenced in just four years, worldwide participation in the project will be fundamental to success. As the European node of the EBP, the European Reference Genome Atlas (ERGA) seeks to implement a new decentralised, accessible, equitable and inclusive model for producing high-quality reference genomes, which will inform EBP as it scales. To embark on this mission, ERGA launched a Pilot Project to establish a network across Europe to develop and test the first infrastructure of its kind for the coordinated and distributed reference genome production on 98 European eukaryotic species from sample providers across 33 European countries. Here we outline the process and challenges faced during the development of a pilot infrastructure for the production of reference genome resources, and explore the effectiveness of this approach in terms of high-quality reference genome production, considering also equity and inclusion. The outcomes and lessons learned during this pilot provide a solid foundation for ERGA while offering key learnings to other transnational and national genomic resource projects.info:eu-repo/semantics/publishedVersio

Mapping Tropical Forest Cover and Deforestation with Planet NICFI Satellite Images and Deep Learning in Mato Grosso State (Brazil) from 2015 to 2021

Monitoring changes in tree cover for assessment of deforestation is a premise for policies to reduce carbon emission in the tropics. Here, a U-net deep learning model was used to map monthly tropical tree cover in the Brazilian state of Mato Grosso between 2015 and 2021 using 5 m spatial resolution Planet NICFI satellite images. The accuracy of the tree cover model was extremely high, with an F1-score >0.98, further confirmed by an independent LiDAR validation showing that 95% of tree cover pixels had a height >5 m while 98% of non-tree cover pixels had a height <5 m. The biannual map of deforestation was then built from the monthly tree cover map. The deforestation map showed relatively consistent agreement with the official deforestation map from Brazil (67.2%) but deviated significantly from Global Forest Change (GFC)’s year of forest loss, showing that our product is closest to the product made by visual interpretation. Finally, we estimated that 14.8% of Mato Grosso’s total area had undergone clear-cut logging between 2015 and 2021, and that deforestation was increasing, with December 2021, the last date, being the highest. High-resolution imagery from Planet NICFI in conjunction with deep learning techniques can significantly improve the mapping of deforestation extent in tropical regions

Dominance of legume trees alters nutrient relations in mixed species forest restoration plantings within seven years

Failures in reforestation are often attributed to nutrient limitation for tree growth. We compared tree performance and nitrogen and phosphorus relations in adjacent mixed-species plantings of contrasting composition, established for forest restoration on Ultisol soil, originally covered by tropical semi-deciduous Atlantic Forest in Southeast Brazil. Nutrient relations of four tree species occurring in both planting mixtures were compared between a legume-dominated, species-poor direct seeding mixture of early-successional species ("legume mixture"), and a species-diverse, legume-poor mixture of all successional groups ("diverse mixture"). After 7 years, the legume mixture had 6-fold higher abundance of N(2)-fixing trees, 177% higher total tree basal area, 22% lower litter C/N, six-fold higher in situ soil resin-nitrate, and 40% lower in situ soil resin-P, compared to the diverse mixture. In the legume mixture, non-N(2)-fixing legume Schizolobium parahyba (Fabaceae-Caesalpinioideae) had significantly lower proportional N resorption, and both naturally regenerating non-legume trees had significantly higher leaf N concentrations, and higher proportional P resorption, than in the diverse mixture. This demonstrate forms of plastic adjustment in all three non-N(2)-fixing species to diverged nutrient relations between mixtures. By contrast, leaf nutrient relations in N(2)-fixing Enterolobium contortisiliquum (Fabaceae-Mimosoideae) did not respond to planting mixtures. Rapid N accumulation in the legume mixture caused excess soil nitrification over nitrate immobilization and tighter P recycling compared with the diverse mixture. The legume mixture succeeded in accelerating tree growth and canopy closure, but may imply periods of N losses and possibly P limitation. Incorporation of species with efficient nitrate uptake and P mobilization from resistant soil pools offers potential to optimize these tradeoffs

A climate-change vulnerability and adaptation assessment for Brazil's protected areas

Brazil hosts the largest expanse of tropical ecosystems within protected areas (PAs), which shelter biodiversity and support traditional human populations. We assessed the vulnerability to climate change of 993 terrestrial and coastal-marine Brazilian PAs by combining indicators of climatic-change hazard with indicators of PA resilience (size, native vegetation cover, and probability of climate-driven vegetation transition). This combination of indicators allows the identification of broad climate-change adaptation pathways. Seventeen PAs (20,611 km(2)) were highly vulnerable and located mainly in the Atlantic Forest (7 PAs), Cerrado (6), and the Amazon (4). Two hundred fifty-eight PAs (756,569 km(2)), located primarily in Amazonia, had a medium vulnerability. In the Amazon and western Cerrado, the projected severe climatic change and probability of climate-driven vegetation transition drove vulnerability up, despite the generally good conservation status of PAs. Over 80% of PAs of high or moderate vulnerability are managed by indigenous populations. Hence, besides the potential risks to biodiversity, the traditional knowledge and livelihoods of the people inhabiting these PAs may be threatened. In at least 870 PAs, primarily in the Atlantic Forest and Amazon, adaptation could happen with little or no intervention due to low climate-change hazard, high resilience status, or both. At least 20 PAs in the Atlantic Forest, Cerrado, and Amazonia should be targeted for stronger interventions (e.g., improvement of ecological connectivity), given their low resilience status. Despite being a first attempt to link vulnerability and adaptation in Brazilian PAs, we suggest that some of the PAs identified as highly or moderately vulnerable should be prioritized for testing potential adaptation strategies in the near future2427437FUNDAÇÃO DE AMPARO À PESQUISA DO ESTADO DE SÃO PAULO - FAPESP2012/08250-3; 2014/50627-2; 2012/51872-5We thank J.P. Darela‐Filho for useful comments and suggestions on this manuscript. This work was supported by São Paulo Research Foundation—FAPESP‐through grants to F.S.O. (grant 2012/08250‐3), J.P.H.B.O. (grant 2014/50627‐2), and C.A.J. (grant 2012/51872‐5) and by the University of Miami and the Swift Action Fund (J.M.C.S.

Innovations for a sustainable future: rising to the challenge of nitrogen greenhouse gas management in Latin America

Latin America encompasses a dizzying array of ecosystems and socioeconomic models, and the region will be highly vulnerable to the projected impacts of climate change in the next century. At the same time, Latin America can significantly contribute to the mitigation of greenhouse gases (GHG) emissions within a sustainable development framework. Land use conversion with associated biomass burning, agriculture with N fertilizers and animal waste are the main anthropogenic sources of nitrous oxide (N2O) emissions in the region, and have increased markedly in the last decades. Effective sustainable managementforthe mitigation of N2O emissions requires the proper evaluation of all sources, many of which are still roughly estimated or unknown, testing alternatives to reduce primary sources, and technological innovation for higher resource-use efficiency within the farm. Current barriers might be overcome through policies that support sustainable practices thatreduce negative environmental impacts and simultaneously maintaining ecosystem function and services.Fil: Bustamante, Mercedes M. C.. Universidade de Brasilia. Departamento de Ecologia; BrasilFil: Martinelli, Luiz A.. Universidade de Sao Pablo; BrasilFil: Ometto, Jean P. H. B.. Instituto Nacional de Pesquisas Espaciais. Centro de Ciência do Sistema Terrestre; BrasilFil: Carmo, Janaina Braga do. Universidade Federal do Sao Carlos; BrasilFil: Jaramillo, Víctor. Universidad Nacional Autónoma de México. Centro de Investigaciones en Ecosistemas; MéxicoFil: Gavito, Mayra E.. Universidad Nacional Autónoma de México. Centro de Investigaciones en Ecosistemas; MéxicoFil: Araujo, Patricia Inés. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Instituto de Investigaciones Fisiológicas y Ecológicas Vinculadas a la Agricultura; ArgentinaFil: Austin, Amy Theresa. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Instituto de Investigaciones Fisiológicas y Ecológicas Vinculadas a la Agricultura; ArgentinaFil: Pérez, Tibisay. Instituto Venezolano de Investigaciones Cientificas; VenezuelaFil: Marquina, Sorena. Instituto Venezolano de Investigaciones Cientificas; Venezuel

Intercomparison of Burned Area Products and Its Implication for Carbon Emission Estimations in the Amazon

Carbon (C) emissions from forest fires in the Amazon during extreme droughts may correspond to more than half of the global emissions resulting from land cover changes. Despite their relevant contribution, forest fire-related C emissions are not directly accounted for within national-level inventories or carbon budgets. A fundamental condition for quantifying these emissions is to have a reliable estimation of the extent and location of land cover types affected by fires. Here, we evaluated the relative performance of four burned area products (TREES, MCD64A1 c6, GABAM, and Fire_cci v5.0), contrasting their estimates of total burned area, and their influence on the fire-related C emissions in the Amazon biome for the year 2015. In addition, we distinguished the burned areas occurring in forests from non-forest areas. The four products presented great divergence in the total burned area and, consequently, total related C emissions. Globally, the TREES product detected the largest amount of burned area (35,559 km2), and consequently it presented the largest estimate of committed carbon emission (45 Tg), followed by MCD64A1, with only 3% less burned area detected, GABAM (28,193 km2) and Fire_cci (14,924 km2). The use of Fire_cci may result in an underestimation of 29.54 &plusmn; 3.36 Tg of C emissions in relation to the TREES product. The same pattern was found for non-forest areas. Considering only forest burned areas, GABAM was the product that detected the largest area (8994 km2), followed by TREES (7985 km2), MCD64A1 (7181 km2) and Fire_cci (1745 km2). Regionally, Fire_cci detected 98% less burned area in Acre state in southwest Amazonia than TREES, and approximately 160 times less burned area in forests than GABAM. Thus, we show that global products used interchangeably on a regional scale could significantly underestimate the impacts caused by fire and, consequently, their related carbon emissions