Microbial growth and substrate utilization kinetics

Microbial growth on and utilization of environmental contaminants as substrates have been studied by many researchers. Most times, substrate utilization results in removal of chemical contaminant, increase in microbial biomass and subsequent biodegradation of the contaminant. These are all aimed at detoxification of the environmental pollutants. Several microbial growth and biodegradation kinetic models have been developed, proposed and used in bioremediation schemes. Some of these models include Monod’s, Andrews, Bungay’s weighted model, general substrate inhibition models (GSIM) and sum kinetic models. Most research on microbial potentials to degrade chemical pollutants has been performed on a laboratory scale. There is a need to extend such studies to pilot scale as well as to fullscale field applications.Keywords: Microbial growth, substrate utilization, biodegradation, kinetics, detoxification, organic contaminants, models, environmental pollutant

Enhancement of recovery of residual oil using a biosurfactant slug

A laboratory investigation of the mobilization and displacement of residual oil in a sand-pack using biosurfactant slug was conducted. The biosurfactant employed was extracted from a culture of Pseudomonas sp. grown on kerosine- supplemented mineral salts medium. Characterization of the biosurfactant extract revealed a mixture of glycolipid and phospholipid in a ratio of 3.35:1. The irreducible water saturation (Swi) and initial residual oil saturation (Sor) of the sand-pack were 0.280 ± 0.003 and 0.373 ± 0.006, respectively. Core flooding experiment showed that an optimum oil recovery of 52.19% of the in-place residual oil was achieved at biosurfactant incubation time (BIT) of 120 h. These results suggest that biosurfactant produced by Pseudomonas species is a potential “candidate” for microbially enhanced oil recovery.Keywords: Laboratory investigation, enhanced oil recovery, biosurfactant slug, Pseudomonas specie

Drilling fluid base oil biodegradation potential of a soil Staphylococcus species

Staphylococcus sp. isolated from oil-contaminated soil was grown in 1% drilling fluid base oil, HDF- 2000, as a sole source of carbon and energy. The organism has strong affinity for the substrate, growing at the rate of 0.16 h-1. It uses adherence and emulsification as mechanisms for oil uptake. In a nutrient-rich marine broth, base oil (up to 2.0% v/v) and glucose (up to 1.6% w/v) have no significant effect on the growth rates. This showed that the Staphylococcus sp. is a strong primary utilizer of the base oil and has potential for application in bioremediation processes involving oil-based drilling fluids. Key words: Drilling fluid base oil, Staphylococcus sp., biodegradation African Journal of Biotechnology Vol.2(9) 2003: 293-29

Characterization of hydrocarbon utilizing bacteria in tropical marine sediments

Hydrocarbon utilizing bacteria present in Nembe waterside sediments, a marine habitat in Port Harcourt, Nigeria, were characterized using standard culture dependent techniques. The sediment samples were collected along the navigational route with an Eckman sediment grab (Wild Life Supply Co., NY). The samples had meant total heterotrophic bacterial count of 6.6 × 107cfu g-1 and hydrocarbon utilizing bacteria of 8.22 × 102 cfu g-1. The hydrocarbon utilizing bacteria isolated and identified belonged to the following genera; Bacillus, Nocardia, Staphylococcus, Pseudomonas, Flavobacterium, Escherichia, Acinetobacter and Enterobacter. Bacillus spp. were the most isolated followed by Pseudomonas spp. Gas chromatographic analysis of the sediment sample showed a total petroleum hydrocarbon concentration of 102.02 mg kg-1 and presence of higher chain hydrocarbons like C14, C16, C18 and C28. Species of the bacteria isolated are known hydrocarbon  degraders and it is assumed that the genera identified from the sediment may have the catabolic capability to use petroleumhydrocarbons as source of carbon. Thus the marine sediments of the Niger Delta, Nigeria may habour important genera of bacteria that may have beneficial applications in petroleum microbiology

Crude Oil-Degradation and Plasmid Profile of Nitrifying Bacteria Isolated from Oil-Impacted Mangrove Sediment in the Niger Delta of Nigeria

The crude oil degradability and plasmid profile of autotrophic nitrifying bacteria, Nitrosomonas and Nitrobacter species, isolated from mangrove sediment in the Niger Delta of Nigeria were studied. The effects of temperature, pH and optical density on the utilization of different carbon sources by the bacteria were also investigated. Results showed that nitrifying bacteria could utilize kerosene, diesel oil, jet fuel and engine oil as carbon sources. None utilized hexane and xylene but moderate growth was observed in benzene, phenol and toluene. However, their ability to utilized crude oil varied both in rates of utilization and in growth profiles. Mixed culture of the isolates degrades 52 % of crude oil introduced into the medium followed by Nitrosomonas sp. with 40 % degradation. The least was Nitrobacter sp. with 20 % degradation. The ability of the autotrophs to degrade crude oil was found to be plasmid-mediated through curing experiment and electrophoresis. The size of the plasmid involved was estimated to be 23 kb. The high crude oil utilization of the mixed culture implies that nitrifying bacteria isolated from contaminated ecosystem are excellent crude oil degraders and can be harnessed for bioremediation purposes

Polycyclic Aromatic Hydrocarbon-degrading Bacteria from Aviation Fuel Spill Site at Ibeno, Nigeria

Polycyclic aromatic hydrocarbon (PAH)–degrading bacteria were isolated from aviation fuel contaminated soil at Inua Eyet Ikot in Ibeno, Nigeria. PAH-degrading bacteria in the contaminated soil were isolated by enrichment culture technique. Isolates with high PAH degrading potential characterized by their extensive growth on PAH-supplemented minimal salt medium were screened for their naphthalene, phenanthrene and chrysene degradability. The screening medium which contained selected PAHs as the sole source of carbon and energy showed that Micrococcus varians AFS-2, Pseudomonas putida AFS-3 and Alcaligenes faecalis AFS-5 exhibited a concentration–dependent growth in all the PAH–compounds tested. There were visible changes in the color of growth medium suggesting the production of different metabolites. Their acclimation to different PAH substrates was also evident as A. faecalis AFS-5 isolated from chrysene grew well on other less complex aromatic compounds. The isolate exhibited best growth (0.44 OD600) when exposed to 10 ppm of chrysene for 5 days and could utilize up to 90 ppm of chrysene. This isolate and others with strong PAH-degrading potentials are recommended for bioremediation of PAHs in aviation fuel-contaminated sites in the tropics

Dramatic Shifts in Benthic Microbial Eukaryote Communities following the Deepwater Horizon Oil Spill

Benthic habitats harbour a significant (yet unexplored) diversity of microscopic eukaryote taxa, including metazoan phyla, protists, algae and fungi. These groups are thought to underpin ecosystem functioning across diverse marine environments. Coastal marine habitats in the Gulf of Mexico experienced visible, heavy impacts following the Deepwater Horizon oil spill in 2010, yet our scant knowledge of prior eukaryotic biodiversity has precluded a thorough assessment of this disturbance. Using a marker gene and morphological approach, we present an intensive evaluation of microbial eukaryote communities prior to and following oiling around heavily impacted shorelines. Our results show significant changes in community structure, with pre-spill assemblages of diverse Metazoa giving way to dominant fungal communities in post-spill sediments. Post-spill fungal taxa exhibit low richness and are characterized by an abundance of known hydrocarbon-degrading genera, compared to prior communities that contained smaller and more diverse fungal assemblages. Comparative taxonomic data from nematodes further suggests drastic impacts; while pre-spill samples exhibit high richness and evenness of genera, post-spill communities contain mainly predatory and scavenger taxa alongside an abundance of juveniles. Based on this community analysis, our data suggest considerable (hidden) initial impacts across Gulf beaches may be ongoing, despite the disappearance of visible surface oil in the region

Monitoring of microbial hydrocarbon remediation in the soil

Bioremediation of hydrocarbon pollutants is advantageous owing to the cost-effectiveness of the technology and the ubiquity of hydrocarbon-degrading microorganisms in the soil. Soil microbial diversity is affected by hydrocarbon perturbation, thus selective enrichment of hydrocarbon utilizers occurs. Hydrocarbons interact with the soil matrix and soil microorganisms determining the fate of the contaminants relative to their chemical nature and microbial degradative capabilities, respectively. Provided the polluted soil has requisite values for environmental factors that influence microbial activities and there are no inhibitors of microbial metabolism, there is a good chance that there will be a viable and active population of hydrocarbon-utilizing microorganisms in the soil. Microbial methods for monitoring bioremediation of hydrocarbons include chemical, biochemical and microbiological molecular indices that measure rates of microbial activities to show that in the end the target goal of pollutant reduction to a safe and permissible level has been achieved. Enumeration and characterization of hydrocarbon degraders, use of micro titer plate-based most probable number technique, community level physiological profiling, phospholipid fatty acid analysis, 16S rRNA- and other nucleic acid-based molecular fingerprinting techniques, metagenomics, microarray analysis, respirometry and gas chromatography are some of the methods employed in bio-monitoring of hydrocarbon remediation as presented in this review

Effects of fish feeds on the activity and survival of Aeromonas Hydrophila and nitrifying bacteria in a tilapia fish pond

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