Ticks (Acari: Ixodidae) as ectoparasites of Brazilian wild birds and their association with rickettsial diseases

Ticks (Acari: Ixodidae) are obligatory hematophagous ectoparasites of a variety of vertebrate hosts and play an important role in the transmission and ecology of infectious pathogens causing diseases in humans and animals worldwide. Sixty-eight species of ticks exist in Brazil, and at least 23 are found parasitizing wild birds. This number is increasing with the advent of new studies highlighting the underestimated role of birds in the life cycle of these arthropods. In South America, many of these ticks are involved in epidemiology of the life-threatening spotted fever diseases caused by bacteria from the genus Rickettsia (Rickettsiales: Rickettsiaceae). The aim of this paper is to present up-to-date knowledge about the bird-tick fauna of Brazil and their association with rickettsioses. The available literature concerning ticks on birds and tick-borne diseases related to these ticks in Brazil has been revised. It could be concluded that birds play a primary role in life cycles of various tick species, especially during immature stages (larvae and nymphs). The best known is a bird-tick fauna from the Atlantic Forest and from Brazilian savannah called Cerrado in southern and central Brazil, respectively. On the other hand, the knowledge about bird tick parasitism from other Brazilian biomes such as the Amazon, Caatinga, Pantanal and Pampas regions is very scarce and requires further study. Moreover, no studies about the role of birds as mobile hosts for spreading ticks to new areas exist, nor has their role in the natural life cycle of Rickettsia been thoroughly examined.Os carrapatos (Acari: Ixodoidea) são ectoparasitas obrigatórias de uma variedade de hospedeiros vertebrados e têm um papel importante na ecologia e transmissão de diversos patógenos causadores de doenças em humanos e animais no mundo todo. No Brasil existem 68 espécies de carrapatos e pelo menos 23 espécies são encontradas parasitando aves silvestres. Esse número tem crescido com o advento de novos estudos ressaltando o papel das aves nos ciclos de vida desses artrópodes. Na América do Sul alguns desses carrapatos estão envolvidos na epidemiologia de doenças graves para o ser humano, como a febre maculosa, causada por bactérias do gênero Rickettsia (Rickettsiales: Rickettsiaceae). O alvo desse artigo é apresentar o estado atual de conhecimento sobre a fauna de carrapatos encontrados em aves no Brasil e as associações estabelecidas com as riquetsioses. A literatura disponível sobre carrapatos em aves e ocorrência de riquétsias foi revisada e pôde ser concluído que aves têm um papel importante nos ciclos de vida de várias espécies de carrapatos, sendo especialmente importantes para os estágios imaturos (larvas e ninfas). A maior parte do conhecimento sabrecai na fauna de carrapatos de aves dos biomas Mata Atlântica e Cerrado no sudeste e centro-oeste do Brasil. Já o conhecimento sobre o parasitismo por carrapatos em aves dos outros biomas: Amazônia, Caatinga, Pantanal e Pampas é muito limitado. Além disso, não há estudos sobre o papel de aves como disseminadores de carrapatos entre áreas e também o papel de aves no ciclo de Rickettsia não está totalmente esclarecido.

DETECCIÓN MOLECULAR DE Rickettsia bellii EN Amblyomma rotundatum Koch 1884 (IXODIDA: IXODIDAE) RECOLECTADA DE Rhinella marina L., 1758 (ANURA: BUFONIDAE) EN PANAMÁ

The finding of the bacterium Rickettsia bellii in the tick Amblyomma rotundatum is presented to Panama.Se presenta el hallazgo de la bacteria Rickettsia bellii en la garrapata Amblyomma rotundatum en Panamá

Fiocruz in Antarctica – health and environmental surveillance facing the challenges of the 21st century

Abstract FioAntar, FIOCRUZ’s research project in Antarctica, is based on the One Health approach. FioAntar aims to generate relevant information that will help reduce the risk of future pandemics and improve the search for chemical compounds and new biological molecules. After four expeditions to Antarctica under the scope of PROANTAR, Fiocruz has identified Influenza H11N2 virus in environmental fecal samples, as well as Histoplasma capsulatum and Bacillus cereus in soil samples. In addition, in a prospective virome analysis from different lakes in the South Shetland Islands, six viral orders were described, supporting future research related to the biodiversity and viral ecology in this extreme ecosystem. Our findings of environmental pathogens of public health importance are a warning about the urgency of establishing a surveillance agenda on zoonoses in Antarctica due to the imminent risks that ongoing environmental and climate changes impose on human health across the planet. FioAntar strives to establish a comprehensive surveillance program across Antarctica, monitoring circulation of pathogens with the potential to transcend continent boundaries, thereby mitigating potential spread. For Fiocruz, Antarctica signifies a new frontier, teeming with opportunities to explore novel techniques, refine established methodologies, and cultivate invaluable knowledge

Accuracy of saliva for SARS-CoV-2 detection in outpatients and their household contacts during the circulation of the Omicron variant of concern.

BACKGROUND: While nasopharyngeal (NP) swabs are considered the gold standard for severe acute respiratory coronavirus 2 (SARS-CoV-2) real-time reverse transcriptase-polymerase chain reaction (RT-PCR) detection, several studies have shown that saliva is an alternative specimen for COVID-19 diagnosis and screening. METHODS: To analyze the utility of saliva for the diagnosis of COVID-19 during the circulation of the Omicron variant, participants were enrolled in an ongoing cohort designed to assess the natural history of SARS-CoV-2 infection in adults and children. Sensitivity, specificity, positive predictive value (PPV), negative predictive value (NPV), and Cohen's kappa coefficient were calculated to assess diagnostic performance. RESULTS: Overall, 818 samples were collected from 365 outpatients from January 3 to February 2, 2022. The median age was 32.8 years (range: 3-94 years). RT-PCR for SARS-CoV-2 was confirmed in 97/121 symptomatic patients (80.2%) and 62/244 (25.4%) asymptomatic patients. Substantial agreement between saliva and combined nasopharyngeal/oropharyngeal samples was observed with a Cohen's kappa value of 0.74 [95% confidence interval (CI): 0.67-0.81]. Sensitivity was 77% (95% CI: 70.9-82.2), specificity 95% (95% CI: 91.9-97), PPV 89.8% (95% CI: 83.1-94.4), NPV 87.9% (95% CI: 83.6-91.5), and accuracy 88.5% (95% CI: 85.0-91.4). Sensitivity was higher among samples collected from symptomatic children aged three years and older and adolescents [84% (95% CI: 70.5-92)] with a Cohen's kappa value of 0.63 (95% CI: 0.35-0.91). CONCLUSIONS: Saliva is a reliable fluid for detecting SARS-CoV-2, especially in symptomatic children and adolescents during the circulation of the Omicron variant

Post-acute COVID-19 syndrome after reinfection and vaccine breakthrough by the SARS-CoV-2 Gamma variant in Brazil.

We describe a case of prolonged COVID-19 caused by the SARS-CoV-2 Gamma variant in a fully vaccinated healthcare worker, 387 days after an infection caused by lineage B.1.1.33. Infections were confirmed by whole-genome sequencing and corroborated by the detection of neutralizing antibodies in convalescent serum samples. Considering the permanent exposure of this healthcare worker to SARS-CoV-2, the waning immunity after the first infection, the low efficacy of the inactivated vaccine at preventing COVID-19, the immune escape of the Gamma variant (VOC), and the burden of post-COVID syndrome, this individual would have benefited from an additional dose of a heterologous vaccine

The effect of the forest fragmentation on the infestation of wild birds with ticks and infection by Rickettsia spp in the region Pontal do Paranapanema, SP

A fragmentação do habitat causa a redução na diversidade de espécies, afetando as relações entre os hospedeiros vertebrados e os parasitos. Neste estudo se verificou se o tamanho do fragmento florestal influencia a diversidade das aves silvestres o que poderia afetar a prevalência dos carrapatos nas aves. As aves foram capturadas através de redes de neblina em 12 áreas florestais: quarto fragmentos pequenos (80-140 ha); quatro grandes (480-1850 ha) e quatro controles, no Parque Estadual Morro do Diabo (~36000 ha). Adicionalmente foram coletados também carrapatos de vida livre através de arrasto com a flanela branca ao longo de trilhas. A infecção de carrapatos por riquétsias foi avaliada atrvés de PCR. No total foram capturadas 1745 aves representando 80 espécies de 24 famílias. 223 (13%) das aves foram encontradas parasitadas por formas imaturas de carrapatos: 1800 larvas e 539 ninfas. A espécie mais comum parasitando aves foi Amblyomma nodosum. Outras espécies: Amblyomma coelebs, Amblyomma cajennense, Amblyomma ovale, Amblyomma longirostre, Amblyomma calcaratum, e Amblyomma naponense foram achados nas aves esporadicamente. Entre os carrapatos de vida livre, A. cajennense foi a espécie mais comum, seguindo A. coelebs, A. naponense, Amblyomma brasilense e Haemaphysalis juxtakochi. De dois carrapatos A. nodosum foram isoladas bactérias do gênero Rickettsia em células Vero. Os isolados foram caracterizados por PCR e os fragmentos dos genes gltA, htrA sequenciados, e quando possível ompA e ompB. Um isolado foi identificado como Rickettsia bellii e o segundo, como R. parkeri. Dos 174 A. nodosum testados para a presença de riquétsia, 41 (23.6%) foram infectados por R. parkeri e 10 (5.7%) por R. bellii. A diversidade de aves era maior em áreas do controle, mas varias espécies as aves e também dos carrapatos responderam ao fragmentaço em modo diferente. A. nodosum parasitando as aves era mais abundante em áreas pequenas, enquando A. cajennense encontrado nas aves e em vida livre, era mais abundante em áreas do controle e em áreas grandes. Essas differencias de occorencia dos carraptos podem ser relacionadas com a abundância dos hospedeiros principais e fatores ambientais como temperatura e humidade nas áreas amostradas. Isso é um resultado da fragmentação do habitat que ilustra a falta de equilíbrio entre relações de parasitos, hospedeiros e ambiente.Habitat fragmentation causes reduction in species diversity, affecting the relationships between vertebrate hosts and parasites. We tested if patch size has influence on forest birds diversity, which could affect the prevalence of ticks on wild birds. During two years we conducted a bird survey, using mist net in 12 areas: four small patches (80-140 ha), four large ones (480-1850 ha) and four control areas within the Morro do Diabo State Park (~36000 ha). Free living ticks were also collected through dragging the vegetation. Identified ticks were tested in the laboratory for the presence of Rickettsia. A total of 1,745 birds were captured representing 80 species from 24 families. A total of 223 (13%) birds were found infested by immature forms of ticks: 1,800 larvae and 539 nymphs. The most common tick parazitizing birds was Amblyomma nodosum. Other species, Amblyomma coelebs, Amblyomma cajennense, Amblyomma ovale, Amblyomma longirostre, Amblyomma calcaratum, and Amblyomma naponense were found sporadically. Among free-living ticks collected in the environment, A. cajennense was the most common followed by A. coelebs, A. naponense, Amblyomma brasilense and Haemaphysalis juxtakochi. From two individuals of A. nodosum ticks, rickettsiae were isolated in Vero cell culture and the isolates were molecularly characterized using the rickettsial genes gltA, htrA, and when possible also ompA and ompB. The first isolate was identified as Rickettsia bellii and the second isolate, was identified as R. parkeri. Among 174 A. nodosum tested, 41 (23.6%) were found to be infected by R. parkeri and 10 (5.7%) were infected with R. bellii strain Pontal. Bird diversity was higher in control and large areas, but various species of birds and also ticks responded in different way for fragmentation. A. nodosum parasitizing birds was more abundant in small patches, while A. cajennense found on birds and in the environment was more abundant in control and large areas. These differences of the occurrence of ticks could be related with the abundance of main vertebrate hosts, or environmental conditions such as temperature and humidity in sampled areas. This is a result of fragmentation of habitat and shows the lack of balance between the environment-host-parasite relationships