Late Quaternary history of sedimentation on the Mac. Robertson shelf, East Antarctica: problems with 14C-dating of marine sediment cores

Stratigraphic information concerning the retreat of the Antarctic ice sheet from the continental shelf after the Last Glacial Maximum is reviewed and compared with new results from a shelf valley off Mac. Robertson Land, East Antarctica. Radiocarbon dates and detailed lithostratigraphic logs indicate that the onset of open-marine conditions over shallow shelfbanks (<200 m water depth) was achieved prior to 7000 yr BP and over deep (~l 000 m) middle to oliter shelf valleys, open-marine conditions were achieved prior to 5400 yr BP. Radiocarbon dating of bulk-organic carbon in some diatom oozes by the AMS method demonstrates problems of contamination. Jurassic pollen, spores and organic matter have been eroded and incorporated into Holocene diatom ooze, causing anomalously old 14C dates (e.g. one surface age of 7084 ± 86 yr BP was determined). This problem may arise at other locations around East Antarctica where older strata outcrop on the seafloor

The X-ray spectrum of the Seyfert I galaxy Markarian 766: Dusty warm absorber or relativistic emission lines?

Competing models for broad spectral features in the soft X-ray spectrum of the Seyfert I galaxy Mrk 766 are tested against data from a 130 ks XMM-Newton observation. A model including relativistically broadened Lyalpha emission lines of O VIII N VII and C VI is a better fit to 0.3-2 keV XMM RGS data than a dusty warm absorber. Moreover, the measured depth of neutral iron absorption lines in the spectrum is inconsistent with the magnitude of the iron edge required to produce the continuum break at 17-18 Angstrom in the dusty warm absorber model. The relativistic emission line model can reproduce the broadband (0.1-12 keV) XMM EPIC data with the addition of a fourth line to represent emission from ionized iron at 6.7 keV and an excess due to reflection at energies above the iron line. The pro le of the 6.7 keV iron line is consistent with that measured for the low-energy lines. There is evidence in the RGS data, at the 3sigma level, of spectral features that vary with source flux. The covering fraction of warm absorber gas is estimated to be 12%. Iron in the warm absorber is found to be overabundant with respect to CNO, compared to solar values

An XMM-Newton observation of the extreme Narrow Line Seyfert 1 Galaxy, Mrk 359

We present XMM-Newton observations of Mrk 359, the first Narrow Line Seyfert 1 galaxy discovered. Even among NLS1s, Mrk 359 is an extreme case with extraordinarily narrow optical emission lines. The XMM-Newton data show that Mrk 359 has a significant soft X-ray excess which displays only weak absorption and emission features. The (2-10) keV continuum, including reflection, is flatter than the typical NLS1, with Gamma approximately 1.84. A strong emission line of equivalent width approximately 200 eV is also observed, centred near 6.4 keV. We fit this emission with two line components of approximately equal strength: a broad iron-line from an accretion disc and a narrow, unresolved core. The unresolved line core has an equivalent width of approximately 120 eV and is consistent with fluorescence from neutral iron in distant reprocessing gas, possibly in the form of a `molecular torus'. Comparison of the narrow-line strengths in Mrk 359 and other low-moderate luminosity Seyfert 1 galaxies with those in QSOs suggests that the solid angle subtended by the distant reprocessing gas decreases with increasing AGN luminosity.Comment: Accepted for publication in MNRA

Serosurvey of Coxiella burnetii (Q fever) in Dromedary Camels (Camelus dromedarius) in Laikipia County, Kenya

Dromedary camels (Camelus dromedarius) are an important protein source for people in semi-arid and arid regions of Africa. In Kenya, camel populations have grown dramatically in the past few decades resulting in the potential for increased disease transmission between humans and camels. An estimated four million Kenyans drink unpasteurized camel milk, which poses a disease risk. We evaluated the seroprevalence of a significant zoonotic pathogen, Coxiella burnetii (Q fever), among 334 camels from nine herds in Laikipia County, Kenya. Serum testing revealed 18.6% positive seroprevalence of Coxiella burnetii (n = 344). Increasing camel age was positively associated with C. burnetii seroprevalence (OR = 5.36). Our study confirmed that camels living in Laikipia County, Kenya, have been exposed to the zoonotic pathogen, C. burnetii. Further research to evaluate the role of camels in disease transmission to other livestock, wildlife and humans in Kenya should be conducted

Ecological selection of siderophore-producing microbial taxa in response to heavy metal contamination

This is the author accepted manuscript. The final version is available from Wiley via the DOI in this record.Some microbial public goods can provide both individual and community-wide benefits, and are open to exploitation by non-producing species. One such example is the production of metal-detoxifying siderophores. Here, we investigate whether conflicting selection pressures on siderophore production by heavy metals - a detoxifying effect of siderophores, and exploitation of this detoxifying effect - result in a net increase or decrease. We show that the proportion of siderophore-producing taxa increases along a natural heavy metal gradient. A causal link between metal contamination and siderophore production was subsequently demonstrated in a microcosm experiment in compost, in which we observed changes in community composition towards taxa that produce relatively more siderophores following copper contamination. We confirmed the selective benefit of siderophores by showing that taxa producing large amounts of siderophore suffered less growth inhibition in toxic copper. Our results suggest that ecological selection will favour siderophore-mediated decontamination, with important consequences for potential remediation strategies.This work was funded by the AXA Research Fund and BBSRC (BB/K003240) and NERC (NE/P001130) research councils to AB. SOB was funded by a “Bridging the Gaps” award and PhD scholarship from the University of Exeter. NT was funded by the Horizon 2020 Framework Programme under the Marie Sklodowska-Curie grant agreement (656647). AML was supported by Marie Curie International Incoming Fellowships within the EU Seventh Framework Programme. AB acknowledges support from the Royal Society

Automatically extracting functionally equivalent proteins from SwissProt

In summary, FOSTA provides an automated analysis of annotations in UniProtKB/Swiss-Prot to enable groups of proteins already annotated as functionally equivalent, to be extracted. Our results demonstrate that the vast majority of UniProtKB/Swiss-Prot functional annotations are of high quality, and that FOSTA can interpret annotations successfully. Where FOSTA is not successful, we are able to highlight inconsistencies in UniProtKB/Swiss-Prot annotation. Most of these would have presented equal difficulties for manual interpretation of annotations. We discuss limitations and possible future extensions to FOSTA, and recommend changes to the UniProtKB/Swiss-Prot format, which would facilitate text-mining of UniProtKB/Swiss-Prot

Malignant fibrous histiocytoma of the face: report of a case

This is an Open Access article distributed under the terms of the Creative Commons Attribution Licens

Normal modes and discovery of high-order cross-frequencies in the DBV white dwarf GD 358

We present a detailed mode identification performed on the 1994 Whole Earth Telescope (WET) run on GD 358. The results are compared with that obtained for the same star from the 1990 WET data. The two temporal spectra show very few qualitative differences, although amplitude changes are seen in most modes, including the disappearance of the mode identified as k=14 in the 1990 data. The excellent coverage and signal-to-noise ratio obtained during the 1994 run lead to the secure identification of combination frequencies up to fourth order, i.e. peaks that are sums or differences of up to four parent frequencies, including a virtually complete set of second-order frequencies, as expected from harmonic distortion. We show how the third-order frequencies are expected to affect the triplet structure of the normal modes by back-interacting with them. Finally, a search for ℓ=2 modes was unsuccessful, not verifying the suspicion that such modes had been uncovered in the 1990 data set

Stress causes interspecific facilitation within a compost community

This is the final version. Available on open access from Wiley via the DOI in this record. Data availability: The data supporting the results are archived in Zenodo: https://doi.org/10.5072/zenodo.835531Ecological theory predicts interactions between species to become more positive under abiotic stress, while competition should prevail in more benign environments. However, experimental tests of this stress gradient hypothesis in natural microbial communities are lacking. We test this hypothesis by measuring interactions between 10 different members of a bacterial community inhabiting potting compost in the presence or absence of toxic copper stress. We found that copper stress caused significant net changes in species interaction signs, shifting the net balance towards more positive interactions. This pattern was at least in part driven by copper-sensitive isolates – that produced relatively small amounts of metaldetoxifying siderophores – benefitting from the presence of other species that produce extracellular detoxifying agents. As well as providing support for the stress gradient hypothesis, our results highlight the importance of community-wide public goods in shaping microbial community compositionNatural Environment Research Council (NERC)Biotechnology and Biological Sciences Research Council (BBSRC)University of ExeterAXA Research FundFP7 People: MarieCurie Action

Evaluation of the use of decision-support software in carcino-embryonic antigen (CEA)-based follow-up of patients with colorectal cancer

BACKGROUND: The present paper is a first evaluation of the use of "CEAwatch", a clinical support software system for surgeons for the follow-up of colorectal cancer (CRC) patients. This system gathers Carcino-Embryonic Antigen (CEA) values and automatically returns a recommendation based on the latest values. METHODS: Consecutive patients receiving follow-up care for CRC fulfilling our in- and exclusion criteria were identified to participate in this study. From August 2008, when the software was introduced, patients were asked to undergo the software-supported follow-up. Safety of the follow-up, experiences of working with the software, and technical issues were analyzed. RESULTS: 245 patients were identified. The software-supported group contained 184 patients; the control group contained 61 patients. The software was safe in finding the same amount of recurrent disease with fewer outpatient visits, and revealed few technical problems. Clinicians experienced a decrease in follow-up workload of up to 50% with high adherence to the follow-up scheme. CONCLUSION: CEAwatch is an efficient software tool helping clinicians working with large numbers of follow-up patients. The number of outpatient visits can safely be reduced, thus significantly decreasing workload for clinicians