Combining genotypic and phenotypic variation in a geospatial framework to identify sources of mussels in northern New Zealand

The New Zealand green-lipped mussel aquaculture industry is largely dependent on the supply of young mussels that wash up on Ninety Mile Beach (so-called Kaitaia spat), which are collected and trucked to aquaculture farms. The locations of source populations of Kaitaia spat are unknown and this lack of knowledge represents a major problem because spat supply may be irregular. We combined genotypic (microsatellite) and phenotypic (shell geochemistry) data in a geospatial framework to determine if this new approach can help identify source populations of mussels collected from two spat-collecting and four non-spat-collecting sites further south. Genetic analyses resolved differentiated clusters (mostly three clusters), but no obvious source populations. Shell geochemistry analyses resolved six differentiated clusters, as did the combined genotypic and phenotypic data. Analyses revealed high levels of spatial and temporal variability in the geochemistry signal. Whilst we have not been able to identify the source site(s) of Kaitaia spat our analyses indicate that geospatial testing using combined genotypic and phenotypic data is a powerful approach. Next steps should employ analyses of single nucleotide polymorphism markers with shell geochemistry and in conjunction with high resolution physical oceanographic modelling to resolve the longstanding question of the origin of Kaitaia spat

Polypharmacy and potential drug-drug interactions in emergency department patients in the Caribbean

Background Potential Drug–Drug Interactions (DDI) account for many emergency department visits. Polypharmacy, as well as herbal, over-the-counter (OTC) and combination medication may compound this, but these problems are not well researched in low-and-middle-income countries. Objective To compare the incidence of drug–drug interactions and polypharmacy in older and younger patients attending the Emergency Department (ED). Setting The adult ED of a tertiary teaching hospital in Trinidad. Methods A 4 month cross sectional study was conducted, comparing potential DDI in older and younger patients discharged from the ED, as defined using Micromedex 2.0. Main outcome measure The incidence and severity of DDI and polypharmacy (defined as the use of ≥5 drugs simultaneously) in older and younger patients attending the ED. Results 649 patients were included; 275 (42.3%) were ≥65 years and 381 (58.7%) were female. There were 814 DDIs, of which 6 (.7%) were contraindications and 148 (18.2%) were severe. Polypharmacy was identified in 244 (37.6%) patients. Older patients were more likely to have potential DDI (67.5 vs 48.9%) and polypharmacy (56 vs 24.1%). Herbal products, OTC and combination drugs were present in 8, 36.7 and 22.2% of patients, respectively. On multivariate analysis, polypharmacy and the presence of hypertension and ischaemic heart disease were associated with an increased risk of potential DDI. Conclusion Polypharmacy and potential drug–drug interactions are common in ED patients in the Caribbean. Older patients are particularly at risk, especially as they are more likely to be on multiple medications. The association between herbal medication and polypharmacy needs further investigation. This study indicates the need for a more robust system of drug reconciliation in the Caribbean

A Self-Consistent First-Principles Technique Having Linear Scaling

An algorithm for first-principles electronic structure calculations having a computational cost which scales linearly with the system size is presented. Our method exploits the real-space localization of the density matrix, and in this respect it is related to the technique of Li, Nunes and Vanderbilt. The density matrix is expressed in terms of localized support functions, and a matrix of variational parameters, L, having a finite spatial range. The total energy is minimized with respect to both the support functions and the elements of the L matrix. The method is variational, and becomes exact as the ranges of the support functions and the L matrix are increased. We have tested the method on crystalline silicon systems containing up to 216 atoms, and we discuss some of these results.Comment: 12 pages, REVTeX, 2 figure

Venezuelan Equine Encephalitis Virus Infection of Cotton Rats

VEEV killed 2 allopatric populations of cotton rats but not a sympatric population from Florida

Oropouche Virus Isolation, Southeast Brazil

An Oropouche virus strain was isolated from a novel host (Callithrix sp.) in Arinos, Minas Gerais State, southeastern Brazil. The virus was identified by complement fixation test and confirmed by reverse transcription–polymerase chain reaction. Phylogenetic analysis identified this strain as a genotype III isolate previously recognized only in Panama

Solitary magnetic perturbations at the ELM onset

Edge localised modes (ELMs) allow maintaining sufficient purity of tokamak H-mode plasmas and thus enable stationary H-mode. On the other hand in a future device ELMs may cause divertor power flux densities far in excess of tolerable material limits. The size of the energy loss per ELM is determined by saturation effects in the non-linear phase of the ELM, which at present is hardly understood. Solitary magnetic perturbations (SMPs) are identified as dominant features in the radial magnetic fluctuations below 100kHz. They are typically observed close (+-0.1ms) to the onset of pedestal erosion. SMPs are field aligned structures rotating in the electron diamagnetic drift direction with perpendicular velocities of about 10km/s. A comparison of perpendicular velocities suggests that the perturbation evoking SMPs is located at or inside the separatrix. Analysis of very pronounced examples showed that the number of peaks per toroidal turn is 1 or 2, which is clearly lower than corresponding numbers in linear stability calculations. In combination with strong peaking of the magnetic signals this results in a solitary appearance resembling modes like palm tree modes, edge snakes or outer modes. This behavior has been quantified as solitariness and correlated to main plasma parameters. SMPs may be considered as a signature of the non-linear ELM-phase originating at the separatrix or further inside. Thus they provide a handle to investigate the transition from linear to non-linear ELM phase. By comparison with data from gas puff imaging processes in the non-linear phase at or inside the separatrix and in the scrape-off-layer (SOL) can be correlated. A connection between the passing of an SMP and the onset of radial filament propagation has been found. Eventually the findings related to SMPs may contribute to a future quantitative understanding of the non-linear ELM evolution.Comment: submitted to Nuclear Fusio

Sphyrna tudes, Smalleye Hammerhead

The Smalleye Hammerhead (Sphyrna tudes) is a medium-sized (to 150 cm total length) shark that occurs in the Western Central and Southwest Atlantic from Colombia to the Rio de La Plata, Argentina. It inhabits inshore waters over the continental shelf at depths of 5–80 m. It is captured in intense and largely unmanaged commercial and artisanal beach seines, gillnets, longlines, and trawls throughout its geographic range. This shark is targeted or retained as bycatch for its meat, which is consumed or sold locally. There are few data on population reduction but these intensive unmanaged fisheries are suspected to have caused reductions and possibly local extinctions throughout this species' range. For example, in Brazil, this hammerhead has not been recorded in 35 years from Ceará state and it is considered by local fishers to be depleted in Bahia state. This shark is supposed to be strictly protected in Brazil, but it is clear that it is still landed and traded in various states. Overall, due to intense and largely unmanaged fisheries across its range, lack of refuge at depth, suspected declines in many areas and local extinctions suspected from an absence of records (despite continued sampling and observation), and its relatively unproductive life history, it is suspected that the Smalleye Hammerhead has undergone a population reduction of >80% over the past three generations (37 years), and it is assessed as Critically Endangered A2bd.Fil: Pollom, R.. University Fraser Simon; CanadáFil: Barreto, R.. Instituto Chico Mendes de Conservacao Da Biodiversidade; BrasilFil: Charvet, P.. Universidade Federal do Paraná; BrasilFil: Chiaramonte, Gustavo Enrique. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia". Estación Hidrobiológica de Puerto Quequén (sede Quequén); ArgentinaFil: Cuevas, J. M.. Wildlife Conservation Society; Estados UnidosFil: Faria, V.. Universidade Federal Do Ceara; BrasilFil: Herman, K.. Georgia Aquarium; Estados UnidosFil: Lasso Alcala, O.. Fundación la Salle de Ciencias Naturales; VenezuelaFil: Marcante, F.. Universidade Federal Do Rio Grande.; BrasilFil: Mejía Falla, P.A.. Wildlife Conservation Society; Estados UnidosFil: Montealegre Quijano, S.. Universidade Federal de Sao Paulo; BrasilFil: Motta, F.. Universidade Federal de Sao Paulo; BrasilFil: Navia, A. F.. Fundación Squalus; ColombiaFil: Nunes, J.. Universidade Federal Do Maranhao.; BrasilFil: Paesch, L.. Dirección Nacional de Recursos Acuáticos; UruguayFil: Rincon, G.. Universidade Federal Do Maranhao.; Brasi