Genomic Resources Notes Accepted 1 August 2014–30 September 2014

This article documents the public availability of (i) transcriptome sequence data, assembly and annotation, and single nucleotide polymorphisms ( SNP s) for the cone snail Conus miliaris ; (ii) a set of SNP markers for two biotypes from the Culex pipiens mosquito complex; (iii) transcriptome sequence data, assembly and annotation for the mountain fly Drosophila nigrosparsa ; (iv) transcriptome sequence data, assembly and annotation and SNP s for the Neotropical toads Rhinella marina and R. schneideri ; and (v) partial genomic sequence assembly and annotation for 35 spiny lizard species (Genus Sceloporus ).Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/110107/1/men12340-sup-0004-AppendixS4.pdfhttp://deepblue.lib.umich.edu/bitstream/2027.42/110107/2/men12340-sup-0003-AppendixS3.pdfhttp://deepblue.lib.umich.edu/bitstream/2027.42/110107/3/men12340-sup-0002-AppendixS2.pdfhttp://deepblue.lib.umich.edu/bitstream/2027.42/110107/4/men12340-sup-0005-AppendixS5.pdfhttp://deepblue.lib.umich.edu/bitstream/2027.42/110107/5/men12340.pdfhttp://deepblue.lib.umich.edu/bitstream/2027.42/110107/6/men12340-sup-0001-AppendixS1.pd

Data from: "De novo transcriptome assembly and polymorphism detection in ecological important widely distributed Neotropical toads from the Rhinella marina species complex (Anura: Bufonidade)" in Genomic Resources Notes Accepted 1 August 2014-30 September 2014

The toads Rhinella marina and R. schneideri are large terrestrial true toads widely distributed in the Neotropical region, which can hybridize in areas of transition between Amazon rain forest and Cerrado biomes. The former is in particular an important ecological species, and a very successful invader. Here, we report de novo transcriptome of R. marina and R. schneideri and polymorphism SNPs identified between the two species. The transcriptome sequencing was performed on an Illumina platform using five individuals livers mRNA samples for each specie. A total of 554,474,410 and 554,276,922 sequencing reads were collected and assembled into 199,799 and 172,671 transcripts with N50 lengh of 3106bp and 3106bp for R. marina and R. schnedeiri respectively. A total of 709,193 SNPs were identified and characterize for both species. This transcriptome and SNPs will facilitate studies on hybridization and adaptation of the Rhinella complex but also various ecological and evolutionary studies of other amphibians as few transcriptome data are available

SNPs_fixed

SNPs fixed in boscai from Portugal and Spai

Data from: De novo transcriptome assembly and polymorphism detection in two highly divergent evolutionary units of Bosca's newt (Lissotriton boscai) endemic to the Iberian Peninsula

This article reports the de novo transcriptomes of two highly divergent evolutionary units of the Iberian endemic Bosca’s newt, Lissotriton boscai. These two units are distributed allopatrically but meet in areas of secondary contact in central-southwestern coastal region of Portugal. The resources we provide include the raw sequence reads, the assembled transcripts and SNPs called for both lineages

Rhinella schneideri transcriptome non redundant assembly

Rhinella schneideri transcriptome non redundant assembl

Rhinella marina transcriptome full assembly

Rhinella marina transcriptome full assembl

Rhinella marina transcriptome non redundant assembly

Rhinella marina transcriptome non redundant assembl

boscai_portugal_annotation

Annotations generated by Sma3s software for contigs belonging to boscai from Portuga

SNPs_exclusive_in_boscai_portugal

Exclusive SNPs in boscai from Portuga