Disk and outflow signatures in Orion-KL: The power of high-resolution thermal infrared spectroscopy

We used the CRIRES spectrograph on the VLT to study the ro-vibrational 12CO/13CO, the Pfund beta and H2 emission between 4.59 and 4.72mu wavelengths toward the BN object, the disk candidate source n, and a proposed dust density enhancement IRC3. We detected CO absorption and emission features toward all three targets. Toward the BN object, the data partly confirm the results obtained more than 25 years ago by Scoville et al., however, we also identify several new features. While the blue-shifted absorption is likely due to outflowing gas, toward the BN object we detect CO in emission extending in diameter to ~3300AU. Although at the observational spectral resolution limit, the 13CO line width of that feature increases with energy levels, consistent with a disk origin. If one attributes the extended CO emission also to a disk origin, its extent is consistent with other massive disk candidates in the literature. For source n, we also find the blue-shifted CO absorption likely from an outflow. However, it also exhibits a narrower range of redshifted CO absorption and adjacent weak CO emission, consistent with infalling motions. We do not spatially resolve the emission for source n. For both sources we conduct a Boltzmann analysis of the 13CO absorption features and find temperatures between 100 and 160K, and H2 column densities of the order a few times 10^23cm^-2. The observational signatures from IRC3 are very different with only weak absorption against a much weaker continuum source. However, the CO emission is extended and shows wedge-like position velocity signatures consistent with jet-entrainment of molecular gas, potentially associated with the Orion-KL outflow system. We also present and discuss the Pfund beta and H2 emission in the region.Comment: 12 pages, 15 pages, accepted for A&A, you find a high-resolution copy at http://www.mpia-hd.mpg.de/homes/beuther/papers.htm

Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome

Protein synthesis is catalyzed in the peptidyl transferase center (PTC), located in the large (50S) subunit of the ribosome. No high-resolution structure of the intact ribosome has contained a complete active site including both A- and P-site tRNAs. In addition, although past structures of the 50S subunit have found no ordered proteins at the PTC, biochemical evidence suggests that specific proteins are capable of interacting with the 3′ ends of tRNA ligands. Here we present structures, at 3.6-Å and 3.5-Å resolution respectively, of the 70S ribosome in complex with A- and P-site tRNAs that mimic pre- and post-peptidyl-transfer states. These structures demonstrate that the PTC is very similar between the 50S subunit and the intact ribosome. They also reveal interactions between the ribosomal proteins L16 and L27 and the tRNA substrates, helping to elucidate the role of these proteins in peptidyl transfer

Abundance Patterns in the Draco, Sextans and Ursa Minor Dwarf Spheroidal Galaxies

The Keck I telescope has been used to obtain HIRES spectra for red giants belonging to the Draco, Sextans and Ursa Minor dwarf spheroidal (dSph) galaxies. An analysis of these spectra is presented, along with abundance ratios for more than 20 elements. The resulting database of element abundances for 17 stars is the most extensive yet assembled for stars in dSph environments. Our main findings are summarized as follows: (1) There is unambiguous evidence for a large internal spread in metallicity in all three galaxies: our program stars span a range of [Fe/H] = 1.53, 1.40 and 0.73 dex in Draco, Sextans and Ursa Minor, respectively. (2) The abundance patterns among the dSph stars are remarkably uniform, suggesting that all three galaxies have similar nucleosynthetic histories. (3) A comparison of the measured abundance ratios for our sample of dSph stars with published values for Galactic halo and disk field stars suggests that the dSph galaxies have 0.02 < [alpha/Fe] < 0.13 dex, whereas the halo field star sample has [alpha/Fe] ~ 0.28 dex over the same range in metallicity. (4) The most metal-rich dSph stars in our sample have [Y/Fe] abundances which are significantly lower than those measured for halo field stars of similar metallicity, while the measured [Ba/Eu] ratios for the dSph stars suggest that the early chemical evolution of these galaxies was dominated by the r-process. Taken together, these results suggest that the Galactic halo is unlikely to have assembled, in its entirety, through the disruption of dwarf galaxies similar to the low-luminosity dSphs studied here. (ABRIDGED).Comment: 24 pages, 8 postscript figures (including 6 color figures). Accepted for publication in the Astrophysical Journa

Permitted Oxygen Abundances and the Temperature Scale of Metal-Poor Turn-Off Stars

We use high quality VLT/UVES published data of the permitted OI triplet and FeII lines to determine oxygen and iron abundances in unevolved (dwarfs, turn-off, subgiants) metal-poor halo stars. The calculations have been performed both in LTE and NLTE, employing effective temperatures obtained with the new infrared flux method (IRFM) temperature scale by Ramirez & Melendez, and surface gravities from Hipparcos parallaxes and theoretical isochrones. A new list of accurate transition probabilities for FeII lines, tied to the absolute scale defined by laboratory measurements, has been used. We find a plateau in the oxygen-to-iron ratio over more than two orders of magnitude in iron abundance (-3.2 < [Fe/H] < -0.7), with a mean [O/Fe] = 0.5 dex (sigma = 0.1 dex), independent of metallicity, temperature and surface gravity. According to the new IRFM Teff scale, the temperatures of turn-off halo stars strongly depend on metallicity, a result that is in excellent qualitative and quantitative agreement with stellar evolution calculations, which predict that the Teff of the turn-off at [Fe/H] = -3 is about 600-700 K higher than that at [Fe/H] = -1.Comment: In press, Ap

On the Evolution of the Standard Genetic Code: Vestiges of Critical Scale Invariance from the RNA World in Current Prokaryote Genomes

Herein two genetic codes from which the primeval RNA code could have originated the standard genetic code (SGC) are derived. One of them, called extended RNA code type I, consists of all codons of the type RNY (purine-any base-pyrimidine) plus codons obtained by considering the RNA code but in the second (NYR type) and third (YRN type) reading frames. The extended RNA code type II, comprises all codons of the type RNY plus codons that arise from transversions of the RNA code in the first (YNY type) and third (RNR) nucleotide bases. In order to test if putative nucleotide sequences in the RNA World and in both extended RNA codes, share the same scaling and statistical properties to those encountered in current prokaryotes, we used the genomes of four Eubacteria and three Archaeas. For each prokaryote, we obtained their respective genomes obeying the RNA code or the extended RNA codes types I and II. In each case, we estimated the scaling properties of triplet sequences via a renormalization group approach, and we calculated the frequency distributions of distances for each codon. Remarkably, the scaling properties of the distance series of some codons from the RNA code and most codons from both extended RNA codes turned out to be identical or very close to the scaling properties of codons of the SGC. To test for the robustness of these results, we show, via computer simulation experiments, that random mutations of current genomes, at the rates of 10−10 per site per year during three billions of years, were not enough for destroying the observed patterns. Therefore, we conclude that most current prokaryotes may still contain relics of the primeval RNA World and that both extended RNA codes may well represent two plausible evolutionary paths between the RNA code and the current SGC

Soil Microbial Responses to Elevated CO2 and O3 in a Nitrogen-Aggrading Agroecosystem

Climate change factors such as elevated atmospheric carbon dioxide (CO2) and ozone (O3) can exert significant impacts on soil microbes and the ecosystem level processes they mediate. However, the underlying mechanisms by which soil microbes respond to these environmental changes remain poorly understood. The prevailing hypothesis, which states that CO2- or O3-induced changes in carbon (C) availability dominate microbial responses, is primarily based on results from nitrogen (N)-limiting forests and grasslands. It remains largely unexplored how soil microbes respond to elevated CO2 and O3 in N-rich or N-aggrading systems, which severely hinders our ability to predict the long-term soil C dynamics in agroecosystems. Using a long-term field study conducted in a no-till wheat-soybean rotation system with open-top chambers, we showed that elevated CO2 but not O3 had a potent influence on soil microbes. Elevated CO2 (1.5×ambient) significantly increased, while O3 (1.4×ambient) reduced, aboveground (and presumably belowground) plant residue C and N inputs to soil. However, only elevated CO2 significantly affected soil microbial biomass, activities (namely heterotrophic respiration) and community composition. The enhancement of microbial biomass and activities by elevated CO2 largely occurred in the third and fourth years of the experiment and coincided with increased soil N availability, likely due to CO2-stimulation of symbiotic N2 fixation in soybean. Fungal biomass and the fungi∶bacteria ratio decreased under both ambient and elevated CO2 by the third year and also coincided with increased soil N availability; but they were significantly higher under elevated than ambient CO2. These results suggest that more attention should be directed towards assessing the impact of N availability on microbial activities and decomposition in projections of soil organic C balance in N-rich systems under future CO2 scenarios

Forecasting drug utilization and expenditure in a metropolitan health region

<p>Abstract</p> <p>Background</p> <p>New pharmacological therapies are challenging the healthcare systems, and there is an increasing need to assess their therapeutic value in relation to existing alternatives as well as their potential budget impact. Consequently, new models to introduce drugs in healthcare are urgently needed. In the metropolitan health region of Stockholm, Sweden, a model has been developed including early warning (horizon scanning), forecasting of drug utilization and expenditure, critical drug evaluation as well as structured programs for the introduction and follow-up of new drugs. The aim of this paper is to present the forecasting model and the predicted growth in all therapeutic areas in 2010 and 2011.</p> <p>Methods</p> <p>Linear regression analysis was applied to aggregate sales data on hospital sales and dispensed drugs in ambulatory care, including both reimbursed expenditure and patient co-payment. The linear regression was applied on each pharmacological group based on four observations 2006-2009, and the crude predictions estimated for the coming two years 2010-2011. The crude predictions were then adjusted for factors likely to increase or decrease future utilization and expenditure, such as patent expiries, new drugs to be launched or new guidelines from national bodies or the regional Drug and Therapeutics Committee. The assessment included a close collaboration with clinical, clinical pharmacological and pharmaceutical experts from the regional Drug and Therapeutics Committee.</p> <p>Results</p> <p>The annual increase in total expenditure for prescription and hospital drugs was predicted to be 2.0% in 2010 and 4.0% in 2011. Expenditures will increase in most therapeutic areas, but most predominantly for antineoplastic and immune modulating agents as well as drugs for the nervous system, infectious diseases, and blood and blood-forming organs.</p> <p>Conclusions</p> <p>The utilisation and expenditure of drugs is difficult to forecast due to uncertainties about the rate of adoption of new medicines and various ongoing healthcare reforms and activities to improve the quality and efficiency of prescribing. Nevertheless, we believe our model will be valuable as an early warning system to start developing guidance for new drugs including systems to monitor their effectiveness, safety and cost-effectiveness in clinical practice.</p

Mixed Climatology, Non-synoptic Phenomena and Downburst Wind Loading of Structures

Modern wind engineering was born in 1961, when Davenport published a paper in which meteorology, micrometeorology, climatology, bluff-body aerodynamics and structural dynamics were embedded within a homogeneous framework of the wind loading of structures called today \u201cDavenport chain\u201d. Idealizing the wind with a synoptic extra-tropical cyclone, this model was so simple and elegant as to become a sort of axiom. Between 1976 and 1977 Gomes and Vickery separated thunderstorm from non-thunderstorm winds, determined their disjoint extreme distributions and derived a mixed model later extended to other Aeolian phenomena; this study, which represents a milestone in mixed climatology, proved the impossibility of labelling a heterogeneous range of events by the generic term \u201cwind\u201d. This paper provides an overview of this matter, with particular regard to the studies conducted at the University of Genova on thunderstorm downbursts

The Arabidopsis leucine-rich repeat receptor kinase MIK2/LRR-KISS connects cell wall integrity sensing, root growth and response to abiotic and biotic stresses

Plants actively perceive and respond to perturbations in their cell walls which arise during growth, biotic and abiotic stresses. However, few components involved in plant cell wall integrity sensing have been described to date. Using a reverse-genetic approach, we identified the Arabidopsis thaliana leucine-rich repeat receptor kinase MIK2 as an important regulator of cell wall damage responses triggered upon cellulose biosynthesis inhibition. Indeed, loss-of-function mik2 alleles are strongly affected in immune marker gene expression, jasmonic acid production and lignin deposition. MIK2 has both overlapping and distinct functions with THE1, a malectin-like receptor kinase previously proposed as cell wall integrity sensor. In addition, mik2 mutant plants exhibit enhanced leftward root skewing when grown on vertical plates. Notably, natural variation in MIK2 (also named LRR-KISS) has been correlated recently to mild salt stress tolerance, which we could confirm using our insertional alleles. Strikingly, both the increased root skewing and salt stress sensitivity phenotypes observed in the mik2 mutant are dependent on THE1. Finally, we found that MIK2 is required for resistance to the fungal root pathogen Fusarium oxysporum. Together, our data identify MIK2 as a novel component in cell wall integrity sensing and suggest that MIK2 is a nexus linking cell wall integrity sensing to growth and environmental cues