The Vocal Breeding Behaviour of Harbour Seals (Phoca vitulina) in Georgia Strait, Canada: Temporal Patterns and Vocal Repertoire

During the breeding season, male harbour seals (Phoca vitulina) produce underwater calls used in intra-sexual competition and advertisement. One call type, called a roar, has been documented in every population of this species that has been studied. Because calls vary in structure and temporal patterns among populations, it can be inferred that regional vocal dialects may exist, and that the influence of local environmental and biological conditions may affect the timing of calls. Breeding calls have only been studied in relatively few locations worldwide; however, the effect of ambient noise on the underwater vocal behaviour of harbour seals has not been studied. I investigated the temporal patterns, structure and complexity of harbour seal breeding calls at Hornby Island, British Columbia. Underwater recordings were made near the south end of Hornby Island in the summer breeding season of 2014 using a single omnidirectional hydrophone while concurrent visual observations were conducted at a nearby site on shore. I investigated the relationships between roars per hour, tide level, ambient noise and time of day. Logistic regression showed that roars were over eight times more likely to be heard during night-time hours than during the day. When roars were heard, roar number was most influenced by time of day and the progression of the breeding season, with more roars heard later into the breeding season. Roar density was inversely related with ambient noise; however, ambient noise and time of day were highly auto-correlated, and therefore the effects of these two variables could not be assessed independently. Whereas harbour seal call timing in other areas has been attributed to tidally-driven haul-out patterns, the tide level at Hornby Island did not statistically correlate with roar density. I hypothesize that ambient noise may be a cause of the strong diel pattern of call density at Hornby Island, and suggest further study to determine the mechanistic link between ambient noise cycles and calling behaviour. Four breeding call types were identified, one of which was the ‘roar’ call described in every population that has been studied. The structure of the roars at Hornby Island was comparable to those of other populations, but displayed wide variation in several parameters. Each of the three non-roar call types were distinguished from roars qualitatively by aural-visual classification, and quantitatively by trained linear discriminants analysis (LDA). Agreement between these two classification systems was 88%, suggesting that the four call types were distinct. The three non-roar call types contained five call subtypes which were also identified through aural-visual and LDA classification. Agreement was slightly lower at 74%, but more variable, suggesting that some call subtypes were more distinct than others. One non-roar call type, the sweep, was distinct from any call previously described for harbour seals worldwide. I suggest that more than one of these call types are used by each individual, supporting the results of a previous study in California which identified several call types produced by harbour seals. If this is the case, then the vocal breeding repertoire of harbour seals at Hornby Island is more complex than that of most previously studied populations. Further study of this population with the ability to localize calls and identify individuals is required to support or refute the hypothesis that individual harbour seals at Hornby Island produce several call types

FABRIC: A National-Scale Programmable Experimental Network Infrastructure

FABRIC is a unique national research infrastructure to enable cutting-edge and exploratory research at-scale in networking, cybersecurity, distributed computing and storage systems, machine learning, and science applications. It is an everywhere-programmable nationwide instrument comprised of novel extensible network elements equipped with large amounts of compute and storage, interconnected by high speed, dedicated optical links. It will connect a number of specialized testbeds for cloud research (NSF Cloud testbeds CloudLab and Chameleon), for research beyond 5G technologies (Platforms for Advanced Wireless Research or PAWR), as well as production high-performance computing facilities and science instruments to create a rich fabric for a wide variety of experimental activities

Leaders or Followers? A Temporal Analysis of Tweets from IRA Trolls

The Internet Research Agency (IRA) influences online political conversations in the United States, exacerbating existing partisan divides and sowing discord. In this paper we investigate the IRA's communication strategies by analyzing trending terms on Twitter to identify cases in which the IRA leads or follows other users. Our analysis focuses on over 38M tweets posted between 2016 and 2017 from IRA users (n=3,613), journalists (n=976), members of Congress (n=526), and politically engaged users from the general public (n=71,128). We find that the IRA tends to lead on topics related to the 2016 election, race, and entertainment, suggesting that these are areas both of strategic importance as well having the highest potential impact. Furthermore, we identify topics where the IRA has been relatively ineffective, such as tweets on military, political scandals, and violent attacks. Despite many tweets on these topics, the IRA rarely leads the conversation and thus has little opportunity to influence it. We offer our proposed methodology as a way to track the strategic choices of future influence operations in real-time.Comment: ICWSM 202

NNSS Soils Monitoring: Plutonium Valley (CAU366)

The U.S. Department of Energy (DOE) National Nuclear Security Administration (NNSA), Nevada Site Office (NSO), Environmental Restoration Soils Activity has authorized the Desert Research Institute (DRI) to conduct field assessments of potential sediment transport of contaminated soil from Corrective Action Unit (CAU) 366, Area 11 Plutonium Valley Dispersion Sites Contamination Area (CA) during precipitation runoff events

Effective Control of Chronic γ-Herpesvirus Infection by Unconventional MHC Class Ia–Independent CD8 T Cells

Control of virus infection is mediated in part by major histocompatibility complex (MHC) Class Ia presentation of viral peptides to conventional CD8 T cells. Although important, the absolute requirement for MHC Class Ia–dependent CD8 T cells for control of chronic virus infection has not been formally demonstrated. We show here that mice lacking MHC Class Ia molecules (K(b−/−)xD(b−/−) mice) effectively control chronic γ-herpesvirus 68 (γHV68) infection via a robust expansion of β(2)-microglobulin (β(2)-m)-dependent, but CD1d-independent, unconventional CD8 T cells. These unconventional CD8 T cells expressed: (1) CD8αβ and CD3, (2) cell surface molecules associated with conventional effector/memory CD8 T cells, (3) TCRαβ with a significant Vβ4, Vβ3, and Vβ10 bias, and (4) the key effector cytokine interferon-γ (IFNγ). Unconventional CD8 T cells utilized a diverse TCR repertoire, and CDR3 analysis suggests that some of that repertoire may be utilized even in the presence of conventional CD8 T cells. This is the first demonstration to our knowledge that β(2)-m–dependent, but Class Ia–independent, unconventional CD8 T cells can efficiently control chronic virus infection, implicating a role for β(2)-n–dependent non-classical MHC molecules in control of chronic viral infection. We speculate that similar unconventional CD8 T cells may be able to control of other chronic viral infections, especially when viruses evade immunity by inhibiting generation of Class Ia–restricted T cells

Tonopah Test Range Air Monitoring: CY2012 Meteorological, Radiological, and Airborne Particulate Observations

In 1963, the Atomic Energy Commission (AEC), predecessor to the US Department of Energy (DOE), implemented Operation Roller Coaster on the Tonopah Test Range (TTR) and an adjacent area of the Nevada Test and Training Range (NTTR) (formerly the Nellis Air Force Range (NAFR)). Operation Roller Coaster consisted of four tests in which chemical explosions were detonated in the presence of nuclear devices to assess the dispersal of radionuclides and evaluate the effectiveness of storage structures to contain the ejected radionuclides. These tests resulted in dispersal of plutonium over the ground surface downwind of the test ground zero. Three tests, Clean Slate 1, 2, and 3, were conducted on the TTR in Cactus Flat; the fourth, Double Tracks, was conducted in Stonewall Flat on the NTTR. DOE is working to clean up and close all four sites. Substantial cleaned up has been accomplished at Double Tracks and Clean Slate 1. Cleanup of Clean Slate 2 and 3 is on the DOE planning horizon for some time in the next several years. The Desert Research Institute installed two monitoring stations, number 400 at the Sandia National Laboratories Range Operations Center and number 401 at Clean Slate 3, in 2008 and a third monitoring station, number 402 at Clean Slate 1, in 2011 to measure radiological, meteorological, and dust conditions. The primary objectives of the data collection and analysis effort are to (1) monitor the concentration of radiological parameters in dust particles suspended in air, (2) determine whether winds are re-distributing radionuclides or contaminated soil material, (3) evaluate the controlling meteorological conditions if wind transport is occurring, and (4) measure ancillary radiological, meteorological, and environmental parameters that might provide insight to the above assessments. The following observations are based on data collected during CY2012. The mean annual concentration of gross alpha and gross beta is highest at Station 400 and lowest at Station 401. This difference may be the result of using filter media at Station 400 with a smaller pore size than the media used at the other two stations. Average annual gamma exposure at Station 401 is slightly greater than at Station 400 and 402. Average annual gamma exposure at all three TTR stations are in the upper range to slightly higher than values reported for the CEMP stations surrounding the TTR. At higher wind speeds, the saltation counts are greater at Station 401 than at Station 402 while the suspended particulate concentrations are greater at Station 402 than at Statin 401. Although these observations seem counterintuitive, they are likely the result of differences in the soil material present at the two sites. Station 401 is located on an interfluve elevated above two adjacent drainage channels where the soil surface is likely to be composed of coarser material. Station 402 is located in finer sediments at the playa edge and is also subject to dust from a dirt road only 500 m to the north. During prolonged high wind events, suspended dust concentrations at Station 401 peaked with the initial winds then decreased whereas dust concentrations at Station 402 peaked with each peak in the wind speed. This likely reflects a limited PM10 source that is quickly expended at Station 401 relative to an abundant PM10 source at Station 402. In CY2013, to facilitate comparisons between radiological analyses of collected dust, the filter media at all three stations will be standardized. In addition, a sequence of samples will be collected at Station 400 using both types of filter media to enable development of a mathematical relationship between the results derived from the two filter types. Additionally, having acquired approximately four years of observations at Stations 400 and 401 and a year of observations at Station 402, a period-of-record analysis of the radiological and airborne dust conditions will be undertaken

IRF-3, IRF-5, and IRF-7 Coordinately Regulate the Type I IFN Response in Myeloid Dendritic Cells Downstream of MAVS Signaling

Although the transcription factors IRF-3 and IRF-7 are considered master regulators of type I interferon (IFN) induction and IFN stimulated gene (ISG) expression, Irf3-/-×Irf7-/- double knockout (DKO) myeloid dendritic cells (mDC) produce relatively normal levels of IFN-β after viral infection. We generated Irf3-/-×Irf5-/-×Irf7-/- triple knockout (TKO) mice to test whether IRF-5 was the source of the residual induction of IFN-β and ISGs in mDCs. In pathogenesis studies with two unrelated positive-sense RNA viruses (West Nile virus (WNV) and murine norovirus), TKO mice succumbed at rates greater than DKO mice and equal to or approaching those of mice lacking the type I IFN receptor (Ifnar-/-). In ex vivo studies, after WNV infection or exposure to Toll-like receptor agonists, TKO mDCs failed to produce IFN-β or express ISGs. In contrast, this response was sustained in TKO macrophages following WNV infection. To define IRF-regulated gene signatures, we performed microarray analysis on WNV-infected mDC from wild type (WT), DKO, TKO, or Ifnar-/- mice, as well as from mice lacking the RIG-I like receptor adaptor protein MAVS. Whereas the gene induction pattern in DKO mDC was similar to WT cells, remarkably, almost no ISG induction was detected in TKO or Mavs-/- mDC. The relative equivalence of TKO and Mavs-/- responses suggested that MAVS dominantly regulates ISG induction in mDC. Moreover, we showed that MAVS-dependent induction of ISGs can occur through an IRF-5-dependent yet IRF-3 and IRF-7-independent pathway. Our results establish IRF-3, -5, and -7 as the key transcription factors responsible for mediating the type I IFN and ISG response in mDC during WNV infection and suggest a novel signaling link between MAVS and IRF-5

Key role of T cell defects in age-related vulnerability to West Nile virus

West Nile virus (WNV) infection causes a life-threatening meningoencephalitis that becomes increasingly more prevalent over the age of 50 and is 40–50× more prevalent in people over the age of 70, compared with adults under the age of 40. In a mouse model of age-related vulnerability to WNV, we demonstrate that death correlates with increased viral titers in the brain and that this loss of virus control with age was the result of defects in the CD4 and CD8 T cell response against WNV. Specific age-related defects in T cell responses against dominant WNV epitopes were detected at the level of cytokine and lytic granule production, each of which are essential for resistance against WNV, and in the ability to generate multifunctional anti-WNV effector T cells, which are believed to be critical for robust antiviral immunity. In contrast, at the peak of the response, old and adult T cells exhibited superimposable peptide sensitivity. Most importantly, although the adult CD4 or CD8 T cells readily protected immunodeficient mice upon adoptive transfer, old T cells of either subset were unable to provide WNV-specific protection. Consistent with a profound qualitative and quantitative defect in T cell immunity, old brains contained at least 12× fewer total effector CD8 T cells compared with adult mice at the peak of brain infection. These findings identify potential targets for immunomodulation and treatment to combat lethal WNV infection in the elderly

Immune Response to the West Nile Virus in Aged Non-Human Primates

Background: Risk of encephalitis from West Nile virus (WNV) infection increases dramatically with age. Understanding the basis of this susceptibility requires development of suitable animal models. Here, we investigated the immune response to WNV in old non-human primates. Methodology/Principal Findings: We investigated clinical, immunological and virological correlates of WNV infection in aging non-human primates. Aged (17-30yrs) and adult (6-9yrs) Rhesus macaques (RM) were challenged with WNV in the presence or the absence of the mosquito salivary gland extract (SGE) to approximate natural infection. None of the 26 animals exhibited clinical signs of the disease. Quantitative PCR suggested discrete and short-lived viremia, but infectious virus was never isolated. There was markedly increased, age-independent, proliferation of CD3- non-B cells, followed by Bcell proliferation, which correlated to the loss of detectable WNV genomes. Moreover, animals primed with mosquito salivary gland extract exhibited reduced circulating WNV RNA. While we found the expected age-associated reduction in T cell proliferation, adaptive immunity did not correlate with infection outcome. That was further confirmed in a cohort of thymectomized and/or CD8 T-cell depleted Cynomolgus macaques (CM; N = 15), who also failed to develop WNV disease. Conclusions/significance: Results are consistent with strong and age-independent innate resistance of macaques against WNV challenge. This animal model is therefore not suitable for vaccine and therapeutic testing against WNV. However, understanding the basis of their innate resistance against WNV in macaques could provide helpful clues to improve anti- WNV protection of older adults. © 2010 Wertheimer et al