Ecoenzymes as Indicators of Compost to Suppress Rhizoctonia solani

Reports of disease suppression by compost are inconsistent likely because there are no established standards for feedstock material, maturity age for application, and application rate. The overall goal of the study was to evaluate a suite of biological indicators for their ability to predict disease suppression. Indicators included both commercial available methods for compost stability (Solvita™, respiration) and metrics of soil ecology not yet adopted by the compost industry (e.g., ecoenzymes, nematode community index). Damping-off by Rhizoctonia solani on radish was chosen as a model system given its global importance, competitiveness affected by carbon quality, and lack of disease management options for organic production. Biological indicators were evaluated for their ability to consistently differentiate among curing process, maturity, and feedstock material as a function of disease severity of a seedling bioassay and a compost extract assay to test competition with R. solani growth. Compost processed as vermicompost and anaerobic digestate were more suppressive against R. solani than windrow or aerated static pile. Mature composts were more suppressive than immature components. Feedstocks containing dairy manure and/or hardwood bark tended to have suppressive qualities. In contrast, poultry manure-based components were conducive to disease. Microbial ecoenzymes active on chitin and cellulose and nematode community indices were better predictors of disease suppressiveness than microbial respiration. These indicators are quicker than plant bioassays and could be adopted as tools to certify commercial products

Extensions and block decompositions for finite-dimensional representations of equivariant map algebras

Suppose a finite group acts on a scheme $X$ and a finite-dimensional Lie algebra $\mathfrak{g}$. The associated equivariant map algebra is the Lie algebra of equivariant regular maps from $X$ to $\mathfrak{g}$. The irreducible finite-dimensional representations of these algebras were classified in previous work with P. Senesi, where it was shown that they are all tensor products of evaluation representations and one-dimensional representations. In the current paper, we describe the extensions between irreducible finite-dimensional representations of an equivariant map algebra in the case that $X$ is an affine scheme of finite type and $\mathfrak{g}$ is reductive. This allows us to also describe explicitly the blocks of the category of finite-dimensional representations in terms of spectral characters, whose definition we extend to this general setting. Applying our results to the case of generalized current algebras (the case where the group acting is trivial), we recover known results but with very different proofs. For (twisted) loop algebras, we recover known results on block decompositions (again with very different proofs) and new explicit formulas for extensions. Finally, specializing our results to the case of (twisted) multiloop algebras and generalized Onsager algebras yields previously unknown results on both extensions and block decompositions.Comment: 41 pages; v2: minor corrections, formatting changed to match published versio

Ozone Depletion from Nearby Supernovae

Estimates made in the 1970's indicated that a supernova occurring within tens of parsecs of Earth could have significant effects on the ozone layer. Since that time, improved tools for detailed modeling of atmospheric chemistry have been developed to calculate ozone depletion, and advances have been made in theoretical modeling of supernovae and of the resultant gamma-ray spectra. In addition, one now has better knowledge of the occurrence rate of supernovae in the galaxy, and of the spatial distribution of progenitors to core-collapse supernovae. We report here the results of two-dimensional atmospheric model calculations that take as input the spectral energy distribution of a supernova, adopting various distances from Earth and various latitude impact angles. In separate simulations we calculate the ozone depletion due to both gamma-rays and cosmic rays. We find that for the combined ozone depletion roughly to double the ``biologically active'' UV flux received at the surface of the Earth, the supernova must occur at <8 pc. Based on the latest data, the time-averaged galactic rate of core-collapse supernovae occurring within 8 pc is ~1.5/Gyr. In comparing our calculated ozone depletions with those of previous studies, we find them to be significantly less severe than found by Ruderman (1974), and consistent with Whitten et al. (1976). In summary, given the amplitude of the effect, the rate of nearby supernovae, and the ~Gyr time scale for multicellular organisms on Earth, this particular pathway for mass extinctions may be less important than previously thought.Comment: 24 pages, 4 Postscript figures, to appear in The Astrophysical Journal, 2003 March 10, vol. 58

Reduced tillage, but not organic matter input, increased nematode diversity and food web stability in European long‐term field experiments

Soil nematode communities and food web indices can inform about the complexity, nutrient flows and decomposition pathways of soil food webs, reflecting soil quality. Relative abundance of nematode feeding and life‐history groups are used for calculating food web indices, i.e., maturity index (MI), enrichment index (EI), structure index (SI) and channel index (CI). Molecular methods to study nematode communities potentially offer advantages compared to traditional methods in terms of resolution, throughput, cost and time. In spite of such advantages, molecular data have not often been adopted so far to assess the effects of soil management on nematode communities and to calculate these food web indices. Here, we used high‐throughput amplicon sequencing to investigate the effects of tillage (conventional vs. reduced) and organic matter addition (low vs. high) on nematode communities and food web indices in 10 European long‐term field experiments and we assessed the relationship between nematode communities and soil parameters. We found that nematode communities were more strongly affected by tillage than by organic matter addition. Compared to conventional tillage, reduced tillage increased nematode diversity (23% higher Shannon diversity index), nematode community stability (12% higher MI), structure (24% higher SI), and the fungal decomposition channel (59% higher CI), and also the number of herbivorous nematodes (70% higher). Total and labile organic carbon, available K and microbial parameters explained nematode community structure. Our findings show that nematode communities are sensitive indicators of soil quality and that molecular profiling of nematode communities has the potential to reveal the effects of soil management on soil quality

Genealogies of rapidly adapting populations

The genetic diversity of a species is shaped by its recent evolutionary history and can be used to infer demographic events or selective sweeps. Most inference methods are based on the null hypothesis that natural selection is a weak or infrequent evolutionary force. However, many species, particularly pathogens, are under continuous pressure to adapt in response to changing environments. A statistical framework for inference from diversity data of such populations is currently lacking. Toward this goal, we explore the properties of genealogies in a model of continual adaptation in asexual populations. We show that lineages trace back to a small pool of highly fit ancestors, in which almost simultaneous coalescence of more than two lineages frequently occurs. While such multiple mergers are unlikely under the neutral coalescent, they create a unique genetic footprint in adapting populations. The site frequency spectrum of derived neutral alleles, for example, is non-monotonic and has a peak at high frequencies, whereas Tajima's D becomes more and more negative with increasing sample size. Since multiple merger coalescents emerge in many models of rapid adaptation, we argue that they should be considered as a null-model for adapting populations.Comment: to appear in PNA

A very high altitude survey of the effect of latitude upon cosmic-ray intensities - and an attempt at a general interpretation of cosmic-ray phenomena

The results of a very high altitude geographical survey extending in airplanes from Northern Canada to Peru, to altitudes of 22,000 feet, and, in three stratosphere flights made within the United States, to altitudes of 60,000 feet, are interpreted in the light of (1) the Epstein and the Lemaitre-Vallarta analysis of the effect of the earth's magnetic field, and (2) the Bowen-Millikan proof that the immediate agents responsible for the ionization of the atmosphere are electrons (+ and -), rather than protons or heavier nuclei. The main conclusions reached are: (1) that the resistance of the atmosphere to incoming electrons is 1 billion volts because of extranuclear encounters, 5 billion volts because of nuclear encounters; (2) that nuclear electron encounters produce only very soft secondaries, both photons and electrons; (3) that incoming photons produce most of the ionization found at sea-level or at sub-sea-level depths; (4) that nearly all of the non-field sensitive part of the ionization of the atmosphere above sea-level is due to photons of energy 200±170 million electron volts; (5) that in the equatorial belt a small part of the ionization is due to incoming secondary electrons of energies as high as 10 billion volts; (6) that these are responsible for the east-west effect and the longitude effect found in the equatorial belt; (7) that the field sensitive part of the ionization increases rapidly with increasing latitude in going from Panama to Spokane because incoming secondaries of energies decreasing from 8 billion to 2 billion volts get through the blocking effect of the field in rapidly increasing numbers with increasing latitude and add greatly in northern latitudes to the underlying ionization of the upper-air produced by the incoming photons; (8) that the only source now in sight of the observed cosmic-ray energies is matter-annihilation; (9) that the softest components of the cosmic rays have the energies corresponding to the partial annihilation or atom building hypothesis, while the hardest components have energies corresponding to the complete atom-annihilation hypothesis; (10) that these processes may conceivably be taking place (1) because of the very low temperatures that facilitate the clustering of hydrogen in interstellar space, or (2) because of such extreme temperature conditions of the opposite sort as are found in novae, as suggested by Zwicky

New evidence as to the nature of the incoming cosmic rays, their absorbability in the atmosphere, and the secondary character of the penetrating rays found in such abundance at sea level and below

The intensity of latitude-sensitive cosmic rays as would be measured by an electroscope placed just outside the atmosphere has been calculated. The ionization due to incoming electrons of 10 billion electron volts energy in this same electroscope placed 1/20th of an atmosphere beneath the top is found to be 13 times that outside. Electrons do not become penetrating by virtue of high energies even up to 17 billion electron volts. Neither protons nor other penetrating particles of any sort enter the atmosphere in significant numbers from outside the atmosphere. The observed penetrating particles and all other cosmic-ray effects, latitude-sensitive and non-latitude-sensitive, found in the lower atmosphere are practically all secondary effects—splashes from the absorption of electrons, or photons, or both taking place in the outer layers of the atmosphere

Further tests of the atom-annihilation hypothesis as to the origin of the cosmic rays

1. Tests in Mexico. The authors had predicted that since the hypothetical silicon-annihilation rays should have enough energy (13.2 Bev) to get vertically through the earth's magnetic field at the equator in Peru, though not in India, there should be found, both at sea level and at all altitudes in the Americas, when vertically incoming rays alone are under test, a very long plateau of uniform cosmic-ray intensities extending north from Mollendo, Peru to about the latitude of Victoria, Mexico (mag. lat. 32.8°). There the strong band due to oxygen annihilation rays (7.5 Bev) should first appear, to be followed in going still further north when the latitude of 40° N magnetic had been reached, by the full entrance of the nitrogen annihilation band (6.5 Bev). The experimental findings were in accord with these predictions. 2. Tests in the United States. In going from Pasadena (mag. lat. 40.7° to St. George, Utah, but 4.1° (280 miles) nearer to the N magnetic pole than Pasadena, the carbon-annihilation band (5.6 Bev) was expected to appear, to be followed by a flat plateau clear up to latitude 54° N magnetic, when helium annihilation rays (1.88 Bev) were expected to appear. A ballon flight at St. George (mag. lat. 44.8°) and another at Pocatello, Idaho (mag. lat. 51°) yielded preliminary results in harmony with these predictions. 3. Evidence that the act of atom-annihilation actually transforms the rest mass energy of an atom into an electron pair. The flat plateau between St. George and Pocatello (mag. lat. 51°) corresponding to the absence of abundant atoms of atomic weight between that of carbon and that of helium, and the definite appearance of a new band between Omaha (mag. lat. 51.3°) and Bismarck (mag. lat. 56°) constitute new and strong evidence for the transformability of the complete rest mass energy of an atom into an electron pair