Establishment and production from thinned mature deciduous-forest silvopastures in Appalachia

Paper presented at the 11th North American Agroforesty Conference, which was held May 31-June 3, 2009 in Columbia, Missouri.In Gold, M.A. and M.M. Hall, eds. Agroforestry Comes of Age: Putting Science into Practice. Proceedings, 11th North American Agroforestry Conference, Columbia, Mo., May 31-June 3, 2009.Past research has not adequately addressed effective management and utilization of silvopastures developed from the ubiquitous mature woodlots which comprise 40-50% of small Appalachian farm acreage. While some grazing in woodlots is common, a set of guidelines for optimal utilization of these areas is not. We thinned a white oak dominated mature second growth forested area establishing two 0.5 ha, eight-paddock, orchardgrass-perennial ryegrass-white clover silvopasture replications for comparison with two nearby open pasture replications. After thinning trees, silvopastures were limed, fertilized and seeded. Sheep were fed hay and corn scattered across the area to facilitate removal of residual understory and incorporation of applied materials into surface soil. We measured soil moisture in the top 15 cm using TDR and photosynthetically active radiation (PAR) using a system of 16, 1 m line Quantum Sensors during the subsequent growing seasons of 2004, 2005, and 2006. Paddocks were rotationally grazed by sheep with two 1 m2 herbage mass samples taken prior to animal grazing. There was no significant difference in soil moisture between silvopastures and open pastures however, there was adequate rainfall to prevent drought all three years. The two silvopasture replications had residual tree stands of 14.1 and 15.6 m2 ha-1 diameter breast height allowing 42 and 51 [percent] of total daily incident PAR compared to measurements in the open field. Total forage mass yield from open pasture for 2004, 2005 and 2006 was 9.9, 10.5 and 10.2 t ha-1 respectively and for silvopasture 8.5, 6.7 and 6.7 t ha-1. Silvopastures received 47 [percent] of open pasture incident PAR yet yielded an average of 72 [percent] as much herbage mass as the open pastures. The silvopasture soils were managed for forage production only a few years unlike the open pastures which received roughly a century of better management. Soil limitations may have contributed to decreased forage yield in silvopastures in addition to reduced PAR.C.M. Feldhake, J.P.S. Neel and D.P. Belesky ; USDA-ARS Appalachian Farming Systems Research Center 1224 Airport Road, Beaver, WV.Includes bibliographical references

Ferrimagnetism of dilute Ising antiferromagnets

It is shown that nearest-neighbor antiferromagnetic interactions of identical Ising spins on imbalanced bipartite lattice and imbalanced bipartite hierarchical fractal result in ferrimagnetic order instead of antiferromagnetic one. On some crystal lattices dilute Ising antiferromagnets may also become ferrimagnets due to the imbalanced nature of the magnetic percolation cluster when it coexists with the percolation cluster of vacancies. As evidenced by the existing experiments on $Fe_pZn_{1-p}F_2$, such ferrimagnetism is inherent property of bcc lattice so thermodynamics of these compounds at low $p$ can be similar to that of antiferromagnet on imbalanced hierarchical fractal.Comment: 6 pages, 4 figure

High Prevalence of inhA Promoter Mutations among Patients with Drug-Resistant Tuberculosis in KwaZulu-Natal, South Africa

Background Drug-resistant tuberculosis (TB) remains extremely difficult to treat because there are often few remaining active medications and limited diagnostic options to detect resistance. Resistance to isoniazid is typically caused by mutations in either katG or the inhA promoter. inhA mutations confer low-level resistance to isoniazid and cross-resistance to ethionamide while katG mutations confer high-level isoniazid resistance and no cross-resistance. Line Probe Assays (LPAs) that detect mutations in katG and inhA are currently performed on all positive TB cultures in KwaZulu-Natal province, South Africa, but the frequency of inhA mutations in drug-resistant TB patients has not been examined. Methods We sought to determine the proportion of patients who could potentially benefit from high-dose isoniazid and who may be resistant to ethionamide. We reviewed 994 LPA (Hain MTBDRplus) results at the TB reference laboratory in KwaZulu-Natal to determine the frequency of mutations in either katG or the inhA promoter. We stratified these results by drug-resistance category (i.e., MDR-TB, pre-XDR-TB, and XDR-TB) as determined by phenotypic drug-susceptibility testing. Results Among MDR- and XDR-TB isolates, the prevalence of inhA mutations without a concurrent katG mutation was 14.8% and 10.3% respectively. The prevalence of inhA mutations with OR without a katG mutation was 30.3% and 82.8%, respectively. Conclusion More than 10% of patients with MDR- and XDR-TB may benefit from high-dose isoniazid. Although ethionamide is empirically included in all MDR- and XDR-TB regimens, nearly a third of MDR-TB patients and a majority of XDR-TB patients likely have resistance to ethionamide. Laboratories performing line probe assays should report specific band patterns so that clinicians may adjust treatment regimens accordingly

Dynamic Compaction of Biomaterial Powders

Dynamic compaction which requires no external heating for consolidation was used to compact hydroxyapatite. Static precompaction of 3 MPa and dynamic compaction using a projectile velocity of 50 m/s resulted in compacts having a compaction degree of 65% and a tensile strength of 12.4 ± 2.7 MPa This strength was very close to that obtained with sintered compacts one and seemed to indicate that some interparticle boundaries had been created during dynamic compaction

Quantifying the effect of color processing on blood and damaged tissue detection in Whole Slide Images

Histological tissue examination has been a longstanding practice for cancer diagnosis where pathologists identify the presence of tumors on glass slides. Slides acquired from laboratory routine may contain unintentional artifacts due to complications in surgical resection. Blood and damaged tissue artifacts are two common problems associated with transurethral resection of the bladder tumor. Differences in histotechnical procedures among laboratories may also result in color variations and minor inconsistencies in outcome. A digitized version of a glass slide known as a whole slide image (WSI) holds enormous potential for automated diagnostics. The presence of irrelevant areas in a WSI undermines diagnostic value for pathologists as well as computational pathology (CPATH) systems. Therefore, automatic detection and exclusion of diagnostically irrelevant areas may lead to more reliable predictions. In this paper, we are detecting blood and damaged tissue against diagnostically relevant tissue. We gauge the effectiveness of transfer learning against training from scratch. Best models give 0.99 and 0.89 F1 scores for blood and damaged tissue detection. Since blood and damaged tissue have subtle color differences, we assess the impact of color processing methods on the binary classification performance of five well-known architectures. Finally, we remove the color to understand its importance against morphology on classification performance.acceptedVersio

Invasive cancerous area detection in non-muscle invasive bladder cancer whole slide images

Bladder cancer patients’ stratification into risk groups relies on grade, stage and clinical factors. For non-muscle invasive bladder cancer, T1 tumours that invade the subepithelial tissue are high-risk lesions with a high probability to progress into an aggressive muscle-invasive disease. Detecting invasive cancerous areas is the main factor for dictating the treatment strategy for the patient. However, defining invasion is often subject to intra/interobserver variability among pathologists, thus leading to over or undertreatment. Computer-aided diagnosis systems can help pathologists reduce overheads and erratic reproducibility. We propose a multi-scale model that detects invasive cancerous areas patterns across the whole slide image. The model extracts tiles of different tissue types at multiple magnification levels and processes them to predict invasive patterns based on local and regional information for accurate T1 staging. Our proposed method yields an F1 score of 71.9, in controlled settings 74.9, and without infiltration 90.0.acceptedVersio

The ULK3 kinase is a determinant of keratinocyte self-renewal and tumorigenesis targeting the arginine methylome.

Epigenetic mechanisms oversee epidermal homeostasis and oncogenesis. The identification of kinases controlling these processes has direct therapeutic implications. We show that ULK3 is a nuclear kinase with elevated expression levels in squamous cell carcinomas (SCCs) arising in multiple body sites, including skin and Head/Neck. ULK3 loss by gene silencing or deletion reduces proliferation and clonogenicity of human keratinocytes and SCC-derived cells and affects transcription impinging on stem cell-related and metabolism programs. Mechanistically, ULK3 directly binds and regulates the activity of two histone arginine methyltransferases, PRMT1 and PRMT5 (PRMT1/5), with ULK3 loss compromising PRMT1/5 chromatin association to specific genes and overall methylation of histone H4, a shared target of these enzymes. These findings are of translational significance, as downmodulating ULK3 by RNA interference or locked antisense nucleic acids (LNAs) blunts the proliferation and tumorigenic potential of SCC cells and promotes differentiation in two orthotopic models of skin cancer

Hydrogen charging in nickel and iron and its effect on their magnetic properties

The current study was undertaken to explore the possibility of detecting hydrogen cavitation in magnetic materials through magnetic propertymeasurements. It is known that dissolved hydrogen in a material causes microvoids. These voids may affect the structure‐sensitive magnetic properties such as coercivity and remanence. In this study, hydrogen was introduced into nickel and iron by two processes, namely thermal charging and cathodic charging. The effect on the magnetic properties was measured. In addition, the variation of the magnetic properties with porosity was studied