The exploitation of assembly language instructions in biological text manipulation: II. Amino acid sequences

AbstractAmino acid residues may be divided into groups according to similarity of function, or evolutionary history, or other useful criteria. A grouping of amino acids into the eight sets based upon functionality allows a representation involving a three-bit code that can be of value in string matching searches. An amino acid residue may be identified uniquely by employing a further two bits. We propose that amino acid sequence data and search strings be preprocessed to form strings of highest bits, strings of the next highest bits, and so on. Machine assembly language instructions on the separate bit-strings provide a hierarchical measure of homology. We study a number of preprocessing strategies arranged to accord with the kind of search contemplated

An absolute polarimeter for high energy protons

A study of the spin asymmetries for polarized elastic proton proton collisions in the electromagnetic hadronic interference (CNI) region of momentum transfer provides a method of self calibration of proton polarization. The method can be extended to non-identical spin half scattering so that, in principle, the polarization of a proton may be obtained through an analysis of its elastic collision with a different polarized particle, helium 3 for instance. Sufficiently large CNI spin asymmetries provide enough information to facilitate the evaluation of nearly all the helicity amplitudes at small t as well as the polarization of both initial spin half fermions. Thus it can serve equally well as a polarimeter for helium 3

Form of analyzing power and the determination of the basic parameters of hadron scattering amplitude

The determination of magnitudes of basic parameters of the high energy elastic scattering amplitude are examined at small momentum transfers with taking account of the Coulomb-hadron interference effects.Comment: 6 pages, LaTeX, 4 figures (files.ps), Talk at the International Workshop "Spin and Symmetry" (Prague, Chech., 13-19 July 2000

Diffractive effects in spin-flip pp amplitudes and predictions for relativistic energies

We analyze the diffractive (Pomeron) contribution to pp spin-flip amplitude and discuss the possible scenarios for energies available at the Relativistic Heavy-Ion Collider (RHIC). In particular, we show that RHIC data will be instrumental in assessing the real contribution of diffraction to spin amplitudes.Comment: 11 pages, 12 Encapsulated PostScript files, LaTeX2e use

Spin effects in diffractive QQˉ Q \bar Q production at BNL eRHIC

We discuss quark-antiquark leptoproduction within a QCD two-gluon exchange model at small $x$. The double spin asymmetries for longitudinally polarized leptons and transversely polarized protons in diffractive $Q \bar Q$ production are analysed at eRHIC energies. The predicted $A_{lT}$ asymmetry is large and can be used to obtain information on the polarized generalized gluon distributions in the proton.Comment: Some modifications of the text and graphs were done. Title is modified slightly. To be published in Phys. Rev.

GPDs of the nucleons and elastic scattering at high energies

Taking into account the electromagnetic and gravitational form factors, calculated from a new set of $t$-dependent GPDs, a new model is built. The real part of the hadronic amplitude is determined only through complex $s$. In the framework of this model the quantitative description of all existing experimental data at $52.8 \leq \sqrt{s} \leq 1960 \$GeV, including the Coulomb range and large momentum transfers ($0.0008 \leq |t| \leq 9.75 \ $GeV$^2$), is obtained with only$3$fitting high energy parameters. The comparison with the preliminary data of the TOTEM Collaboration at an energy of$7$ TeV is made.Comment: 14 pages, 21 figures, minor corrections (slightly brush English and removed two misprint in numbering

Proton-proton scattering above 3 GeV/c

A large set of data on proton-proton differential cross sections, analyzing powers and the double polarization parameter A_NN is analyzed employing the Regge formalism. We find that the data available at proton beam momenta from 3 GeV/c to 50 GeV/c exhibit features that are very well in line with the general characteristics of Regge phenomenology and can be described with a model that includes the rho, omega, f_2, and a_2 trajectories and single Pomeron exchange. Additional data, specifically for spin-dependent observables at forward angles, would be very helpful for testing and refining our Regge model.Comment: 16 pages, 19 figures; revised version accepted for publication in EPJ