Linear Theory of Electron-Plasma Waves at Arbitrary Collisionality

The dynamics of electron-plasma waves are described at arbitrary collisionality by considering the full Coulomb collision operator. The description is based on a Hermite-Laguerre decomposition of the velocity dependence of the electron distribution function. The damping rate, frequency, and eigenmode spectrum of electron-plasma waves are found as functions of the collision frequency and wavelength. A comparison is made between the collisionless Landau damping limit, the Lenard-Bernstein and Dougherty collision operators, and the electron-ion collision operator, finding large deviations in the damping rates and eigenmode spectra. A purely damped entropy mode, characteristic of a plasma where pitch-angle scattering effects are dominant with respect to collisionless effects, is shown to emerge numerically, and its dispersion relation is analytically derived. It is shown that such a mode is absent when simplified collision operators are used, and that like-particle collisions strongly influence the damping rate of the entropy mode.Comment: 23 pages, 10 figures, accepted for publication on Journal of Plasma Physic

Application of a new vector mode solver to optical fiber-based plasmonic sensors

Our analytical method uses a linear combination of the Hankel functions H1 and H2 to represent the field in the gold region of a fiber-based plasmonic sensor. This method is applied for different structures made from three, four and five layers. When the analyte is distilled water, the difference between the resonant wavelengths calculated with the finite element method and the analytical method is very small (0.00 nm for three layers, 0.19 nm for four layers and 0.07 nm for five layers with two gold layers). The important characteristics of the Bessel and Hankel functions at the loss matching point are analyzed

Folk and Popular Music of Brazil

Both general interest in Brazilian popular music in North America and pertinent research agendas in Brazil and abroad have led to varied new publications. In the musical arena itself, vital new phenomena have appeared, and international attention to Brazil\u27s popular music has significantly increased. As far as sound recording is concerned, the past decade has witnessed the consolidation of the digital age, and the CD has become the preferred vehicle, though the limited buying power of the bulk of the Brazilian population has determined the continued mass manufacture of cassette tapes as well as vinyl LPs in Brazil. In sum, changing conditions of production and consumption, fresh ideas and styles in music-making, and on-going efforts in scholarship, all validate the present revised and expanded edition of the specialized bibliography

Mapping and characterization of G-quadruplexes in Mycobacterium tuberculosis gene promoter regions

Mycobacterium tuberculosis is the causative agent of tuberculosis (TB), one of the top 10 causes of death worldwide in 2015. The recent emergence of strains resistant to all current drugs urges the development of compounds with new mechanisms of action. G-quadruplexes are nucleic acids secondary structures that may form in G-rich regions to epigenetically regulate cellular functions. Here we implemented a computational tool to scan the presence of putative G-quadruplex forming sequences in the genome of Mycobacterium tuberculosis and analyse their association to transcription start sites. We found that the most stable G-quadruplexes were in the promoter region of genes belonging to definite functional categories. Actual G-quadruplex folding of four selected sequences was assessed by biophysical and biomolecular techniques: all molecules formed stable G-quadruplexes, which were further stabilized by two G-quadruplex ligands. These compounds inhibited Mycobacterium tuberculosis growth with minimal inhibitory concentrations in the low micromolar range. These data support formation of Mycobacterium tuberculosis G-quadruplexes in vivo and their potential regulation of gene transcription, and prompt the use of G4 ligands to develop original antitubercular agents

Formation of a Unique Cluster of G-Quadruplex Structures in the HIV-1 nef Coding Region: Implications for Antiviral Activity

G-quadruplexes are tetraplex structures of nucleic acids that can form in G-rich sequences. Their presence and functional role have been established in telomeres, oncogene promoters and coding regions of the human chromosome. In particular, they have been proposed to be directly involved in gene regulation at the level of transcription. Because the HIV-1 Nef protein is a fundamental factor for efficient viral replication, infectivity and pathogenesis in vitro and in vivo, we investigated G-quadruplex formation in the HIV-1 nef gene to assess the potential for viral inhibition through G-quadruplex stabilization. A comprehensive computational analysis of the nef coding region of available strains showed the presence of three conserved sequences that were uniquely clustered. Biophysical testing proved that G-quadruplex conformations were efficiently stabilized or induced by G-quadruplex ligands in all three sequences. Upon incubation with a G-quadruplex ligand, Nef expression was reduced in a reporter gene assay and Nef-dependent enhancement of HIV-1 infectivity was significantly repressed in an antiviral assay. These data constitute the first evidence of the possibility to regulate HIV-1 gene expression and infectivity through G-quadruplex targeting and therefore open a new avenue for viral treatment. © 2013 Perrone et al

Integration of measurements and model simulations to characterize Eyjafjallajökull volcanic aerosols over south-eastern Italy

Abstract. Volcanic aerosols resulting from the Eyjafjallajökull eruption were detected in south-eastern Italy from 20 to 22 April 2010, at a distance of approximately 4000 km from the volcano, and have been characterized by lidar, sun/sky photometer, and surface in-situ measurements. Volcanic particles added to the pre-existing aerosol load and measurement data allow quantifying the impact of volcanic particles on the aerosol vertical distribution, lidar ratios, the aerosol size distribution, and the ground-level particulate-matter concentrations. Lidar measurements reveal that backscatter coefficients by volcanic particles were about one order of magnitude smaller over south-eastern Italy than over Central Europe. Mean lidar ratios at 355 nm were equal to 64 ± 5 sr inside the volcanic aerosol layer and were characterized by smaller values (47 ± 2 sr) in the underlying layer on 20 April, 19:30 UTC. Lidar ratios and their dependence with the height reduced in the following days, mainly because of the variability of the volcanic particle contributions. Size distributions from sun/sky photometer measurements reveal the presence of volcanic particles with radii r > 0.5 μm on 21 April and that the contribution of coarse volcanic particles increased from 20 to 22 April. The aerosol fine mode fraction from sun/sky photometer measurements varied between values of 0.85 and 0.94 on 20 April and decreased to values between 0.25 and 0.82 on 22 April. Surface measurements of particle size distributions were in good accordance with column averaged particle size distributions from sun/sky photometer measurements. PM1/PM2.5 mass concentration ratios of 0.69, 0.66, and 0.60 on 20, 21, and 22 April, respectively, support the increase of super-micron particles at ground. Measurements from the Regional Air Quality Agency show that PM10 mass concentrations on 20, 21, and 22 April 2010 were enhanced in the entire Apulia Region. More specifically, PM10 mass concentrations have on average increased over Apulia Region 22%, 50%, and 28% on 20, 21, and 22 April, respectively, compared to values on 19 April. Finally, the comparison of measurement data with numerical simulations by the FLEXPART dispersion model demonstrates the ability of FLEXPART to model the advection of the volcanic ash over the 4000 km from the Eyjafjallajökull volcano to Southern Italy

Pd-catalyzed Reductions in Deep Eutectic Solvents by Using Aluminum and Water as Hydrogen Source

The reduction of organic functional groups, using metal-catalyzed hydrogenations, is one of the most employed strategy in organic chemistry for the synthesis of both fine and bulk chemicals.[1] Hydrogen is an explosive gas and its production needs extensive energy and generates a considerable amount of carbon dioxide. Therefore, the development of cost-effective reduction methods that use safe reagents, environmentally-friendly solvents and prevent or minimize waste formation represents a challenge of great interest in sustainable chemistry. As part of our ongoing efforts in the discovery of sustainable synthetic methodologies,[2] an alternative and safe palladium-catalyzed hydrogenation reaction in Deep Eutectic Solvents (DESs) is here described.[3] The use of aluminum powder in combination with water and a base in DESs, results in an environmentally-responsible system for the controlled in-situ generation of hydrogen. Our optimized protocol is effective for the reduction of a wide range of functional groups, containing C–C, C–N, C–O, N–O multiple bonds as well as for the dearomatization of (hetero)aromatic compounds, and leads to the desired products in yield up-to 99%. The simplicity, cost, tunability, scalability and the environmentally benign character of both catalytic system and DESs, offer numerous advantages over the currently available methods that employ external and dangerous H2 source and harsh, volatile organic solvents

Stable and Conserved G-Quadruplexes in the Long Terminal Repeat Promoter of Retroviruses

Retroviruses infect almost all vertebrates, from humans to domestic and farm animals, from primates to wild animals, where they cause severe diseases, including immunodeficiencies, neurological disorders, and cancer. Nonhuman retroviruses have also been recently associated with human diseases. To date, no effective treatments are available; therefore, finding retrovirus-specific therapeutic targets is becoming an impelling issue. G-Quadruplexes are four-stranded nucleic acid structures that form in guanine-rich regions. Highly conserved G-quadruplexes located in the long-terminal-repeat (LTR) promoter of HIV-1 were shown to modulate the virus transcription machinery; moreover, the astonishingly high degree of conservation of G-quadruplex sequences in all primate lentiviruses corroborates the idea that these noncanonical nucleic acid structures are crucial elements in the lentiviral biology and thus have been selected for during evolution. In this work, we aimed at investigating the presence and conservation of G-quadruplexes in the Retroviridae family. Genomewide bioinformatics analysis showed that, despite their documented high genetic variability, most retroviruses contain highly conserved putative G-quadruplex-forming sequences in their promoter regions. Biophysical and biomolecular assays proved that these sequences actually fold into G-quadruplexes in physiological concentrations of relevant cations and that they are further stabilized by ligands. These results validate the relevance of G-quadruplexes in retroviruses and endorse the employment of G-quadruplex ligands as innovative antiretroviral drugs. This study indicates new possible pathways in the management of retroviral infections in humans and animal species. Moreover, it may shed light on the mechanism and functions of retrovirus genomes and derived transposable elements in the human genome