23,451 research outputs found
Efficiency at maximum power of interacting molecular machines
We investigate the efficiency of systems of molecular motors operating at
maximum power. We consider two models of kinesin motors on a microtubule: for
both the simplified and the detailed model, we find that the many-body
exclusion effect enhances the efficiency at maximum power of the many-motor
system, with respect to the single motor case. Remarkably, we find that this
effect occurs in a limited region of the system parameters, compatible with the
biologically relevant range.Comment: To appear in Phys. Rev. Let
Image processing applications using a novel parallel computing machine based on reconfigurable logic
Zelig is a 32 physical node fine-grained computer employing field-programmable gate arrays. Its application to the high speed implementation of various image pre-processing operations (in particular binary morphology) is described together with typical speed-up result
Imaging radar polarimetry from wave synthesis
It was shown that it is possible to measure the complete scattering matrix of an object using data acquired on a single aircraft pass, and can combine the signals later in the data processor to generate radar images corresponding to any desired combination of transmit and receive polarization. Various scattering models predict different dependence on polarization state of received power from an object. The imaging polarimeter permits determination of this dependence, which is called the polarization signature, of each point in a radar image. Comparison of the theoretical predictions and observational data yield identification of possible scattering mechanisms for each area of interest. It was found that backscatter from the ocean is highly polarized and well-modeled by Bragg scattering, while scattering from trees in a city park possesses a considerable unpolarized component. Urban regions exhibit the characteristics expected from dihedral corner reflectors and their polarization signatures are quite different from the one-bounce Bragg model
Directed flow in non-adiabatic stochastic pumps
We analyze the operation of a molecular machine driven by the non-adiabatic
variation of external parameters. We derive a formula for the integrated flow
from one configuration to another, obtain a "no-pumping theorem" for cyclic
processes with thermally activated transitions, and show that in the adiabatic
limit the pumped current is given by a geometric expression.Comment: 5 pages, 2 figures, very minor change
Linear response of a grafted semiflexible polymer to a uniform force field
We use the worm-like chain model to analytically calculate the linear
response of a grafted semiflexible polymer to a uniform force field. The result
is a function of the bending stiffness, the temperature, the total contour
length, and the orientation of the field with respect to that of the grafted
end. We also study the linear response of a worm-like chain with a periodic
alternating sequence of positive and negative charges. This can be considered
as a model for a polyampholyte with intrinsic bending siffness and negligible
intramolecular interactions. We show how the finite intrinsic persistence
length affects the linear response to the external field.Comment: 6 pages, 3 figure
Solwind observations of coronal mass ejections during 1979-1985
Coronal observations have been processed for parts of each year during the interval 1979-1985. Around sunspot maximum, coronal mass ejections (CMEs) occurred at the rate of approximately 2 per day, and had a wide range of physical and morphological properties. During the recent years of relatively low sunspot number, CMEs occurred at the rate of only 0.2 per day, and were dominated by the class of so-called streamer blowout. These special CMEs maintained a nearly constant occurrence rate of roughly 0.1 per day during the entire interval
Motor-driven Dynamics of Cytoskeletal FIlaments in Motility Assays
We model analytically the dynamics of a cytoskeletal filament in a motility
assay. The filament is described as rigid rod free to slide in two dimensions.
The motor proteins consist of polymeric tails tethered to the plane and modeled
as linear springs and motor heads that bind to the filament. As in related
models of rigid and soft two-state motors, the binding/unbinding dynamics of
the motor heads and the dependence of the transition rates on the load exerted
by the motor tails play a crucial role in controlling the filament's dynamics.
Our work shows that the filament effectively behaves as a self-propelled rod at
long times, but with non-Markovian noise sources arising from the coupling to
the motor binding/unbinding dynamics. The effective propulsion force of the
filament and the active renormalization of the various friction and diffusion
constants are calculated in terms of microscopic motor and filament parameters.
These quantities could be probed by optical force microscopy.Comment: 13 pages, 8 figures, 1 Tabl
Transport of Molecular Motor Dimers in Burnt-Bridge Models
Dynamics of molecular motor dimers, consisting of rigidly bound particles
that move along two parallel lattices and interact with underlying molecular
tracks, is investigated theoretically by analyzing discrete-state stochastic
continuous-time burnt-bridge models. In these models the motion of molecular
motors is viewed as a random walk along the lattices with periodically
distributed weak links (bridges). When the particle crosses the weak link it
can be destroyed with a probability , driving the molecular motor motion in
one direction. Dynamic properties and effective generated forces of dimer
molecular motors are calculated exactly as a function of a concentration of
bridges and burning probability and compared with properties of the
monomer motors. It is found that the ratio of the velocities of the dimer and
the monomer can never exceed 2, while the dispersions of the dimer and the
monomer are not very different. The relative effective generated force of the
dimer (as compared to the monomer) also cannot be larger than 2 for most sets
of parameters. However, a very large force can be produced by the dimer in the
special case of for non-zero shift between the lattices. Our
calculations do not show the significant increase in the force generated by
collagenase motor proteins in real biological systems as predicted by previous
computational studies. The observed behavior of dimer molecular motors is
discussed by considering in detail the particle dynamics near burnt bridges.Comment: 21 pages and 11 figure
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