Optimal selection and ordering of columns in supersaturated designs

Two methods to select columns for assigning factors to work on supersaturated designs are proposed. The focus of interest is the degree of non-orthogonality between the selected columns. One method is the exhaustive enumeration of selections of p columns from all k columns to find the exact optimality, while the other is intended to find an approximate solution by applying techniques used in the corresponding analysis, aiming for ease of use as well as a reduction in the large computing time required for large k with the first method. Numerical illustrations for several typical design matrices reveal that the resulting “approximately” optimal assignments of factors to their columns are exactly optimal for any p. Ordering the columns in E(s2)-optimal designs results in promising new findings including a large number of E(s2)-optimal designs

Generalized β\beta-conformal change and special Finsler spaces

In this paper, we investigate the change of Finslr metrics $$L(x,y) \to\bar{L}(x,y) = f(e^{\sigma(x)}L(x,y),\beta(x,y)),$$ which we refer to as a generalized $\beta$-conformal change. Under this change, we study some special Finsler spaces, namely, quasi C-reducible, semi C-reducible, C-reducible, $C_2$-like, $S_3$-like and $S_4$-like Finsler spaces. We also obtain the transformation of the T-tensor under this change and study some interesting special cases. We then impose a certain condition on the generalized $\beta$-conformal change, which we call the b-condition, and investigate the geometric consequences of such condition. Finally, we give the conditions under which a generalized $\beta$-conformal change is projective and generalize some known results in the literature.Comment: References added, some modifications are performed, LateX file, 24 page

Precipitating clouds observed by 1.3-GHz boundary layer radars in equatorial Indonesia

International audienceTemporal variations of precipitating clouds in equatorial Indonesia have been studied based on observations with 1357.5 MHz boundary layer radars at Serpong (6.4° S, 106.7° E) near Jakarta and Bukittinggi (0.2° S, 100.3° E) in West Sumatera. We have classified precipitating clouds into four types: stratiform, mixed stratiform-convective, deep convective, and shallow convective clouds, using the Williams et al. (1995) method. Diurnal variations of the occurrence of precipitating clouds at Serpong and Bukittinggi have showed the same characteristics, namely, that the precipitating clouds primarily occur in the afternoon and the peak of the stratiform cloud comes after the peak of the deep convective cloud. The time delay between the peaks of stratiform and deep convective clouds corresponds to the life cycle of the mesoscale convective system. The precipitating clouds which occur in the early morning at Serpong are dominated by stratiform cloud. Concerning seasonal variations of the precipitating clouds, we have found that the occurrence of the stratiform cloud is most frequent in the rainy season, while the occurrence of the deep convective cloud is predominant in the dry season

Parallel dynamics of continuous Hopfield model revisited

We have applied the generating functional analysis (GFA) to the continuous Hopfield model. We have also confirmed that the GFA predictions in some typical cases exhibit good consistency with computer simulation results. When a retarded self-interaction term is omitted, the GFA result becomes identical to that obtained using the statistical neurodynamics as well as the case of the sequential binary Hopfield model.Comment: 4 pages, 2 figure

Extensive Copy-Number Variation of Young Genes across Stickleback Populations

MM received funding from the Max Planck innovation funds for this project. PGDF was supported by a Marie Curie European Reintegration Grant (proposal nr 270891). CE was supported by German Science Foundation grants (DFG, EI 841/4-1 and EI 841/6-1). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript

Chromosomal-level assembly of the Asian Seabass genome using long sequence reads and multi-layered scaffolding

We report here the ~670 Mb genome assembly of the Asian seabass (Lates calcarifer), a tropical marine teleost. We used long-read sequencing augmented by transcriptomics, optical and genetic mapping along with shared synteny from closely related fish species to derive a chromosome-level assembly with a contig N50 size over 1 Mb and scaffold N50 size over 25 Mb that span ~90% of the genome. The population structure of L. calcarifer species complex was analyzed by re-sequencing 61 individuals representing various regions across the species' native range. SNP analyses identified high levels of genetic diversity and confirmed earlier indications of a population stratification comprising three clades with signs of admixture apparent in the South-East Asian population. The quality of the Asian seabass genome assembly far exceeds that of any other fish species, and will serve as a new standard for fish genomics

Identifying human diamine sensors for death related putrescine and cadaverine molecules

Pungent chemical compounds originating from decaying tissue are strong drivers of animal behavior. Two of the best-characterized death smell components are putrescine (PUT) and cadaverine (CAD), foul-smelling molecules produced by decarboxylation of amino acids during decomposition. These volatile polyamines act as 'necromones', triggering avoidance or attractive responses, which are fundamental for the survival of a wide range of species. The few studies that have attempted to identify the cognate receptors for these molecules have suggested the involvement of the seven-helix trace amine-associated receptors (TAARs), localized in the olfactory epithelium. However, very little is known about the precise chemosensory receptors that sense these compounds in the majority of organisms and the molecular basis of their interactions. In this work, we have used computational strategies to characterize the binding between PUT and CAD with the TAAR6 and TAAR8 human receptors. Sequence analysis, homology modeling, docking and molecular dynamics studies suggest a tandem of negatively charged aspartates in the binding pocket of these receptors which are likely to be involved in the recognition of these small biogenic diamines