In Situ Identification of Intracellular Bacteria Related to Paenibacillus spp. in the Mycelium of the Ectomycorrhizal Fungus Laccaria bicolor S238N

Bacterial proliferations have recurrently been observed for the past 15 years in fermentor cultures of the ectomycorrhizal fungus Laccaria bicolor S238N, suggesting the presence of cryptic bacteria in the collection culture of this fungus. In this study, intracellular bacteria were detected by fluorescence in situ hybridization in combination with confocal laser scanning microscopy in several collection subcultures of L. bicolor S238N. They were small (0.5 μm in diameter), rare, and heterogeneously distributed in the mycelium and were identified as Paenibacillus spp. by using a 16S rRNA-directed oligonucleotide probe initially designed for bacteria isolated from a fermentor culture of L. bicolor S238N

Root exclusion through trenching does not affect the isotopic composition of soil CO2 efflux

Disentangling the autotrophic and heterotrophic components of soil CO 2 efflux is critical to understanding the role of soil system in terrestrial carbon (C) cycling. In this study, we combined a stable C-isotope natural abundance approach with the trenched plot method to determine if root exclusion significantly affected the isotopic composition (δ 13C) of soil CO2 efflux (RS). This study was performed in different forest ecosystems: a tropical rainforest and two temperate broadleaved forests, where trenched plots had previously been installed. At each site, RS and its δ13C (δ13CRs) tended to be lower in trenched plots than in control plots. Contrary to RS, δ13CRs differences were not significant. This observation is consistent with the small differences in δ13C measured on organic matter from root, litter and soil. The lack of an effect on δ13CRs by root exclusion could be from the small difference in δ13C between autotrophic and heterotrophic soil respirations, but further investigations are needed because of potential artefacts associated with the root exclusion technique. © 2008 Springer Science+Business Media B.V

Carbon isotopic signature of CO2 emitted by plant compartments and soil in two temperate deciduous forests

• Context: The carbon isotope composition of the CO2 efflux (δ13CE) from ecosystem components is widely used to investigate carbon cycles and budgets at different ecosystem scales. δ13CE, was considered constant but is now known to vary along seasons. The seasonal variations have rarely been compared among different ecosystem components. • Aims: We aimed to characterise simultaneously the seasonal dynamics of δ13CE in different compartments of two temperate broadleaved forest ecosystems. • Methods: Using manual chambers and isotope ratio mass spectrometry, we recorded simultaneously δ13CE and δ13C of organic matter in sun leaves, current-year twigs, trunk bases and soil in an oak and a beech forest during 1 year. • Results: In the two forests, δ13CE displayed a larger variability in the tree components than in the soil. During the leafy period, a pronounced vertical zonation of δ13CE was observed between the top (sun leaves and twigs with higher values) and bottom (trunk and soil with lower values) of the ecosystem. No correlation was found between δ 13CE and δ13C of organic matter. Causes for these seasonal variations and the vertical zonation in isotope signature are discussed. • Conclusion: Our study shows clear differences in values as well as seasonal dynamics of δ13CE among different components in the two ecosystems. The temporal and local variation of δ13CE cannot be inferred from organic matter signature or CO2 emission rates. © 2012 INRA and Springer-Verlag France