Spanning the scales of granular materials through microscopic force imaging.

If you walk on sand, it supports your weight. How do the disordered forces between particles in sand organize, to keep you from sinking? This simple question is surprisingly difficult to answer experimentally: measuring forces in three dimensions, between deeply buried grains, is challenging. Here we describe experiments in which we have succeeded in measuring forces inside a granular packing subject to controlled deformations. We connect the measured micro-scale forces to the macro-scale packing force response with an averaging, mean field calculation. This calculation explains how the combination of packing structure and contact deformations produce the observed nontrivial mechanical response of the packing, revealing a surprising microscopic particle deformation enhancement mechanism

Highlighting boundary condition effects for granular matter flows with numerical simulations

International audienceGranular matter flows naturally occur on small or large bodies due to gravity. Their simulation allows a better understanding of the dynamics of these bodies. However many numerical simulations operate with periodic boundary conditions for convenience , or with static grain boundaries that do not reproduce the rolling and friction effects expected at the interface. This work not only shows that boundary conditions have a long-range effect within the flow , but that dissipative effects induced by flat walls cannot be neglected compared to using static grain boundaries

MC-DEM: a novel simulation scheme for modeling dense granular media

This article presents a new force model for performing quantitative simulations of dense granular materials. Interactions between multiple contacts (MC) on the same grain are explicitly taken into account. Our readily applicable method retains all the advantages of discrete element method (DEM) simulations and does not require the use of costly finite element methods. The new model closely reproduces our recent experimental measurements, including contact force distributions in full 3D, at all compression levels up to the experimental maximum limit of 13\%. Comparisons with traditional non-deformable spheres approach are provided, as well as with alternative models for interactions between multiple contacts. The success of our model compared to these alternatives demonstrates that interactions between multiple contacts on each grain must be included for dense granular packings

Interstitial null-distance time-domain diffuse optical spectroscopy using a superconducting nanowire detector

Significance: Interstitial fiber-based spectroscopy is gaining interest for real-time in vivo optical biopsies, endoscopic interventions, and local monitoring of therapy. Different from other photonics approaches, time-domain diffuse optical spectroscopy (TD-DOS) can probe the tissue at a few cm distance from the fiber tip and disentangle absorption from the scattering properties. Nevertheless, the signal detected at a short distance from the source is strongly dominated by the photons arriving early at the detector, thus hampering the possibility of resolving late photons, which are rich in information about depth and absorption. Aim: To fully benefit from the null-distance approach, a detector with an extremely high dynamic range is required to effectively collect the late photons; the goal of our paper is to test its feasibility to perform TD-DOS measurements at null source-detector separations (NSDS). Approach: In particular, we demonstrate the use of a superconducting nanowire single photon detector (SNSPD) to perform TD-DOS at almost NSDS formula presented by exploiting the high dynamic range and temporal resolution of the SNSPD to extract late arriving, deep-traveling photons from the burst of early photons. Results: This approach was demonstrated both on Monte Carlo simulations and on phantom measurements, achieving an accuracy in the retrieval of the water spectrum of better than 15%, spanning almost two decades of absorption change in the 700- to 1100-nm range. Additionally, we show that, for interstitial measurements at null source-detector distance, the scattering coefficient has a negligible effect on late photons, easing the retrieval of the absorption coefficient. Conclusions: Utilizing the SNSPD, broadband TD-DOS measurements were performed to successfully retrieve the absorption spectra of the liquid phantoms. Although the SNSPD has certain drawbacks for use in a clinical system, it is an emerging field with research progressing rapidly, and this makes the SNSPD a viable option and a good solution for future research in needle guided time-domain interstitial fiber spectroscopy

Plane shear flows of frictionless spheres: kinetic theory and 3D soft-sphere discrete element method simulations

We use existing 3D Discrete Element simulations of simple shear flows of spheres to evaluate the radial distribution function at contact that enables kinetic theory to correctly predict the pressure and the shear stress, for different values of the collisional coefficient of restitution. Then, we perform 3D Discrete Element simulations of plane flows of frictionless, inelastic spheres, sheared between walls made bumpy by gluing particles in a regular array, at fixed average volume fraction and distance between the walls. The results of the numerical simulations are used to derive boundary conditions appropriated in the cases of large and small bumpiness. Those boundary conditions are, then, employed to numerically integrate the differential equations of Extended Kinetic Theory, where the breaking of the molecular chaos assumption at volume fraction larger than 0.49 is taken into account in the expression of the dissipation rate. We show that the Extended Kinetic Theory is in very good agreement with the numerical simulations, even for coefficients of restitution as low as 0.50. When the bumpiness is increased, we observe that some of the flowing particles are stuck in the gaps between the wall spheres. As a consequence, the walls are more dissipative than expected, and the flows resemble simple shear flows, i.e., flows of rather constant volume fraction and granular temperature

A two-dimensional depth-averaged μ(I)-rheology for dense granular avalanches

Steady uniform granular chute flows are common in industry and provide an important test case for new theoretical models. This paper introduces depth-integrated viscous terms into the momentum-balance equations by extending the recent depth-averaged μ(I) -rheology for dense granular flows to two spatial dimensions, using the principle of material frame indifference or objectivity. Scaling the cross-slope coordinate on the width of the channel and the velocity on the one-dimensional steady uniform solution, we show that the steady two-dimensional downslope velocity profile is independent of scale. The only controlling parameters are the channel aspect ratio, the slope inclination angle and the frictional properties of the chute and the sidewalls. Solutions are constructed for both no-slip conditions and for a constant Coulomb friction at the walls. For narrow chutes, a pronounced parabolic-like depth-averaged downstream velocity profile develops. However, for very wide channels, the flow is almost uniform with narrow boundary layers close to the sidewalls. Both of these cases are in direct contrast to conventional inviscid avalanche models, which do not develop a cross-slope profile. Steady-state numerical solutions to the full three-dimensional μ(I) -rheology are computed using the finite element method. It is shown that these solutions are also independent of scale. For sufficiently shallow channels, the depth-averaged velocity profile computed from the full solution is in excellent agreement with the results of the depth-averaged theory. The full downstream velocity can be reconstructed from the depth-averaged theory by assuming a Bagnold-like velocity profile with depth. For wide chutes, this is very close to the results of the full three-dimensional calculation. For experimental validation, a laser profilometer and balance are used to determine the relationship between the total mass flux in the chute and the flow thickness for a range of slope angles and channel widths, and particle image velocimetry (PIV) is used to record the corresponding surface velocity profiles. The measured values are in good quantitative agreement with reconstructed solutions to the new depth-averaged theory

New approaches to high-resolution mapping of marine vertical structures

Vertical walls in marine environments can harbour high biodiversity and provide natural protection from bottom-trawling activities. However, traditional mapping techniques are usually restricted to down-looking approaches which cannot adequately replicate their 3D structure. We combined sideways-looking multibeam echosounder (MBES) data from an AUV, forward-looking MBES data from ROVs and ROV-acquired videos to examine walls from Rockall Bank and Whittard Canyon, Northeast Atlantic. High-resolution 3D point clouds were extracted from each sonar dataset and structure from motion photogrammetry (SfM) was applied to recreate 3D representations of video transects along the walls. With these reconstructions, it was possible to interact with extensive sections of video footage and precisely position individuals. Terrain variables were derived on scales comparable to those experienced by megabenthic individuals. These were used to show differences in environmental conditions between observed and background locations as well as explain spatial patterns in ecological characteristics. In addition, since the SfM 3D reconstructions retained colours, they were employed to separate and quantify live coral colonies versus dead framework. The combination of these new technologies allows us, for the first time, to map the physical 3D structure of previously inaccessible habitats and demonstrates the complexity and importance of vertical structures

Genetic Interaction of Centrosomin and Bazooka in Apical Domain Regulation in Drosophila Photoreceptor

Cell polarity genes including Crumbs (Crb) and Par complexes are essential for controlling photoreceptor morphogenesis. Among the Crb and Par complexes, Bazooka (Baz, Par-3 homolog) acts as a nodal component for other cell polarity proteins. Therefore, finding other genes interacting with Baz will help us to understand the cell polarity genes' role in photoreceptor morphogenesis. mutation on developing eyes to determine its role in photoreceptor morphogenesis. We found that Cnn is dispensable for retinal differentiation in eye imaginal discs during the larval stage. However, photoreceptors deficient in Cnn display dramatic morphogenesis defects including the mislocalization of Crumbs (Crb) and Bazooka (Baz) during mid-stage pupal eye development, suggesting that Cnn is specifically required for photoreceptor morphogenesis during pupal eye development. This role of Cnn in apical domain modulation was further supported by Cnn's gain-of-function phenotype. Cnn overexpression in photoreceptors caused the expansion of the apical Crb membrane domain, Baz and adherens junctions (AJs). photoreceptor