931 research outputs found
Thermodynamics of nano-cluster phases: a unifying theory
We propose a unifying, analytical theory accounting for the self-organization
of colloidal systems in nano- or micro-cluster phases. We predict the
distribution of cluter sizes with respect to interaction parameters and colloid
concentration. In particular, we anticipate a proportionality regime where the
mean cluster size grows proportionally to the concentration, as observed in
several experiments. We emphasize the interest of a predictive theory in soft
matter, nano-technologies and biophysics.Comment: 4 pages, 1 figur
Coarse-Grained Simulations of Membranes under Tension
We investigate the properties of membranes under tension by Monte-Carlo
simulations of a generic coarse-grained model for lipid bilayers. We give a
comprising overview of the behavior of several membrane characteristics, such
as the area per lipid, the monolayer overlap, the nematic order, and pressure
profiles. Both the low-temperature regime, where the membranes are in a gel
phase, and the high-temperature regime, where they are in the fluid phase, are
considered. In the gel state, the membrane is hardly influenced by tension. In
the fluid state, high tensions lead to structural changes in the membrane,
which result in different compressibility regimes. The ripple state, which is
found at tension zero in the transition regime between the fluid and the gel
phase, disappears under tension and gives way to an interdigitated phase. We
also study the membrane fluctuations in the fluid phase. In the low tension
regime the data can be fitted nicely to a suitably extended elastic theory. At
higher tensions the elastic fit consistently underestimates the strength of
long-wavelength fluctuations. Finally, we investigate the influence of tension
on the effective interaction between simple transmembrane inclusions and show
that tension can be used to tune the hydrophobic mismatch interaction between
membrane proteins.Comment: 14 pages, 14 figures, accepted for publication in The Journal of
Chemical Physic
Cover Article Research Articles, Systems/Circuits
Double cones are the most common photoreceptor cell type in most avian retinas, but their precise functions remain a mystery. Among their suggested functions are luminance detection, polarized light detection, and light-dependent, radical-pair-based magnetoreception. To better understand the function of double cones, it will be crucial to know how they are connected to the neural network in the avian retina. Here we use serial sectioning, multi-beam scanning electron microscopy (ssmSEM) to investigate double cone anatomy and connectivity with a particular focus on their contacts to other photoreceptor and bipolar cells in the chicken retina. We found that double cones are highly connected with neighbouring double cones and with other photoreceptor cells through telodendria-to-terminal and telodendria-to-telodendria contacts. We also identified 15 bipolar cell types based on their axonal stratifications, photoreceptor contact pattern, soma position, and dendritic and axonal field mosaics. Thirteen of these 15 bipolar cell types contacted at least one or both members of the double cone. All bipolar cells were bi- or multistratified. We also identified surprising contacts between other cone types and between rods and cones. Our data indicate a much more complex connectivity network in the outer plexiform layer of the avian retina than originally expected
Main phase transition in lipid bilayers: phase coexistence and line tension in a soft, solvent-free, coarse-grained model
We devise a soft, solvent-free, coarse-grained model for lipid bilayer
membranes. The non-bonded interactions take the form of a weighted-density
functional which allows us to describe the thermodynamics of self-assembly and
packing effects of the coarse-grained beads in terms of a density expansion of
the equation of state and the weighting functions that regularize the
microscopic bead densities, respectively. Identifying the length and energy
scales via the bilayer thickness and the thermal energy scale, kT, the model
qualitatively reproduces key characteristics (e.g., bending rigidity, area per
lipid molecules, and compressibility) of lipid membranes. We employ this model
to study the main phase transition between the liquid and the gel phase of the
bilayer membrane. We accurately locate the phase coexistence using free energy
calculations and also obtain estimates for the bare and the thermodynamic line
tension.Comment: 21 pages, 12 figures. Submitted to J. Chem. Phy
From supported membranes to tethered vesicles: lipid bilayers destabilisation at the main transition
We report results concerning the destabilisation of supported phospholipid
bilayers in a well-defined geometry. When heating up supported phospholipid
membranes deposited on highly hydrophilic glass slides from room temperature
(i.e. with lipids in the gel phase), unbinding was observed around the main gel
to fluid transition temperature of the lipids. It lead to the formation of
relatively monodisperse vesicles, of which most remained tethered to the
supported bilayer. We interpret these observations in terms of a sharp decrease
of the bending rigidity modulus in the transition region, combined
with a weak initial adhesion energy. On the basis of scaling arguments, we show
that our experimental findings are consistent with this hypothesis.Comment: 11 pages, 3 figure
Vesicle shape, molecular tilt, and the suppression of necks
Can the presence of molecular-tilt order significantly affect the shapes of
lipid bilayer membranes, particularly membrane shapes with narrow necks?
Motivated by the propensity for tilt order and the common occurrence of narrow
necks in the intermediate stages of biological processes such as endocytosis
and vesicle trafficking, we examine how tilt order inhibits the formation of
necks in the equilibrium shapes of vesicles. For vesicles with a spherical
topology, point defects in the molecular order with a total strength of
are required. We study axisymmetric shapes and suppose that there is a
unit-strength defect at each pole of the vesicle. The model is further
simplified by the assumption of tilt isotropy: invariance of the energy with
respect to rotations of the molecules about the local membrane normal. This
isotropy condition leads to a minimal coupling of tilt order and curvature,
giving a high energetic cost to regions with Gaussian curvature and tilt order.
Minimizing the elastic free energy with constraints of fixed area and fixed
enclosed volume determines the allowed shapes. Using numerical calculations, we
find several branches of solutions and identify them with the branches
previously known for fluid membranes. We find that tilt order changes the
relative energy of the branches, suppressing thin necks by making them costly,
leading to elongated prolate vesicles as a generic family of tilt-ordered
membrane shapes.Comment: 10 pages, 7 figures, submitted to Phy. Rew.
Specific Heat Study on a Novel Spin-Gapped System : (CH_3)_2NH_2CuCl_3
Specific heat measurements down to 120mK have been performed on a
quasi-one-dimensional spin-gapped system (CH)NHCuCl in
a magnetic field up to 8 T. This compound has a characteristic magnetization
curve which shows a gapless ground state and a plateau at 1/2 of the saturation
value. We have observed a spontaneous antiferromagnetic ordering and a
field-induced one below and above the 1/2 plateau field range, respectively.
The field versus temperature phase diagram is quite unusual and completely
different from those of the other quantum spin systems investigated so far. In
the plateau field range, a double-structure in the specific heat is observed,
reflecting the coexistence of ferromagnetic and antiferromagnetic excitations.
These behaviors are discussed on the basis of a recently proposed novel quantum
spin chain model consisting of weakly coupled ferromagnetic and
antiferromagnetic dimers.Comment: 4 pages, 3 figures, submitted to J. Phys. Soc. Jp
d_c=4 is the upper critical dimension for the Bak-Sneppen model
Numerical results are presented indicating d_c=4 as the upper critical
dimension for the Bak-Sneppen evolution model. This finding agrees with
previous theoretical arguments, but contradicts a recent Letter [Phys. Rev.
Lett. 80, 5746-5749 (1998)] that placed d_c as high as d=8. In particular, we
find that avalanches are compact for all dimensions d<=4, and are fractal for
d>4. Under those conditions, scaling arguments predict a d_c=4, where
hyperscaling relations hold for d<=4. Other properties of avalanches, studied
for 1<=d<=6, corroborate this result. To this end, an improved numerical
algorithm is presented that is based on the equivalent branching process.Comment: 4 pages, RevTex4, as to appear in Phys. Rev. Lett., related papers
available at http://userwww.service.emory.edu/~sboettc
Critical dynamics of an isothermal compressible non-ideal fluid
A pure fluid at its critical point shows a dramatic slow-down in its
dynamics, due to a divergence of the order-parameter susceptibility and the
coefficient of heat transport. Under isothermal conditions, however, sound
waves provide the only possible relaxation mechanism for order-parameter
fluctuations. Here we study the critical dynamics of an isothermal,
compressible non-ideal fluid via scaling arguments and computer simulations of
the corresponding fluctuating hydrodynamics equations. We show that, below a
critical dimension of 4, the order-parameter dynamics of an isothermal fluid
effectively reduces to "model A," characterized by overdamped sound waves and a
divergent bulk viscosity. In contrast, the shear viscosity remains finite above
two dimensions. Possible applications of the model are discussed.Comment: 19 pages, 7 figures; v3: minor corrections and clarifications; as
published in Phys. Rev.
Molecular Dynamics Simulation of Spinodal Decomposition in Three-Dimensional Binary Fluids
Using large-scale molecular dynamics simulations of a two-component
Lennard-Jones model in three dimensions, we show that the late-time dynamics of
spinodal decomposition in concentrated binary fluids reaches a viscous scaling
regime with a growth exponent , in agreement with experiments and a
theoretical analysis for viscous growth.Comment: 4 pages, 3 figure
- …