Transcriptome changes in Hirschfeldia incana in response to lead exposure

Hirschfeldia incana, a pseudometallophyte belonging to the Brassicaceae family and widespread in the Mediterranean region, was selected for its ability to grow on soils contaminated by lead (Pb). The global comparison of gene expression using microarrays between a plant susceptible to Pb (Arabidopsis thaliana) and a Pb tolerant plant (H. incana) enabled the identification of a set of specific genes expressed in response to lead exposure. Three groups of genes were particularly over-represented by the Pb exposure in the biological processes categorized as photosynthesis, cell wall, and metal handling. Each of these gene groups was shown to be directly involved in tolerance or in protection mechanisms to the phytotoxicity associated with Pb. Among these genes, we demonstrated that MT2b, a metallothionein gene, was involved in lead accumulation, confirming the important role of metallothioneins in the accumulation and the distribution of Pb in leaves. On the other hand, several genes involved in biosynthesis of ABA were shown to be up regulated in the roots and shoots of H. incana treated with Pb, suggesting that ABA-mediated signaling is a possible mechanism in response to Pb treatment in H. incana. This latest finding is an important research direction for future studies

Fluorescent pseudomonads occuring in Macrotermes subhyalinus mound structures decrease Cd toxicity and improve its accumulation in sorghum plants

Cd-tolerant bacterial strains of fluorescent pseudomonads, mostly belonging to Pseudomonas monteillii, were isolated from termite mound soil (Macrotermes subhyalinus, a litter-forager and fungus-growing termite), in a Sudanese shrubby savanna, Burkina Faso. Such large mounds appeared as sites of great bacterial diversity and could be considered as hot spots of metal-tolerant fluorescent pseudomonads. Microbial isolates were inoculated to Sorghum plants (S. bicolor) in glasshouse experiments with soil amended with CdCl2 (560 mg Cd kg(-1) soil). Microbial functional diversity was assessed at the end of the experiment by measurement of in situ patterns of catabolic potentials. All the bacteria isolates significantly improved the shoot and total biomass of sorghum plants compared to the control. Results concerning root biomass were not significant with some strains. Arbuscular mycorrhiza (AM) was greatly reduced by CdCl2 amendment, and fluorescent pseudomonad inoculation significantly increased AM colonisation in the contaminated soil. The bacterial inoculation significantly improved Cd uptake by sorghum plants. Measurement of catabolic potentials on 16 substrates showed that the microbial communities were different according to the soil amendment. Soils samples inoculated with pseudomonad strains presented a higher use of ketoglutaric and hydroxybutiric acids, as opposed to fumaric acid in soil samples not inoculated. It is suggested that fluorescent pseudomonads could act indirectly in such metabolic processes by involving a lower rate of degradation of citric acid, in line with the effect of small organic acid on phytoextraction of heavy metals from soil. This is a first contribution to bioremediation of metal-contaminated sites with soil-to-plant transfer, using termite built structures. Further data are required on the efficiency of the bacterial strains isolated and on the processes involved. (c) 2006 Elsevier B.V. All rights reserved

Contrasted effects of shade tree legumes on soil organic carbon stock and carbon balance in 20-year cacao agroforestry, Ivory Coast

International audienceCacao–based agroforestry systems are promoted as adaptation and mitigation solutions for cacao production and carbon sequestration. Based on a 20-year experiment, we assessed the impact of associated shade tree legume (ATL), Albizia lebbeck and Acacia mangium on the total carbon stock (in soil at 60 cm depth + tree biomass + litter) of cacao stands. This study included cacao systems shaded with either A. lebbeck (Cacao-Alb) or A. mangium (Cacao-Aca) and full-sun cacao stands (Control). Soil organic carbon (SOC) contents (up to 60 cm deep) were estimated by a calibrated near-infrared spectroscopy model. Total tree biomasses were estimated using allometric equations. Leaf litter was sampled from 1-m2 quadrats. Compared to Control, Cacao-Aca had a significant negative impact on the carbon stock in the cacao biomass (−47%) as well and in the soil at depths of 10 cm (−23%), 30 cm (−21%) and 60 cm (−12%). In contrast, Cacao-Alb had a nonsignificant effect on carbon storage in the cacao biomass, whereas it generally had a positive influence on the SOC stock regardless of depth, i.e., +6% at the 0–10 cm depth, +7% at 0–30 cm, +20% at 30–60 cm and + 11% at 0–60 cm. Cacao-Aca had a significant positive impact (+71%) on the total carbon stock per hectare. The increase in Cacao-Alb relative to that in the Control reached +38%, but the difference was not significant. These contrasting results between the two tree legume species could be explained by the high-quality litter, reflected by the lower C/N and C/P ratios produced by A. lebbeck, and the greater negative impact of A. mangium on cacao biomass. The main finding of this study is that the impact of intercropping cacao with shade tree legumes on the stand-level total carbon stock depends on the ATL species

The Rock-Eval (R) signature of soil organic carbon in arenosols of the Senegalese groundnut basin : how do agricultural practices matter ?

Soil organic carbon (SOC) ensures soil quality and productivity of cultivated systems in the Sahelian region. This study uses Rock-Eval (R) pyrolysis to examine how cultural practices impact the quantity of SOC and quality of SOM in cultivated sandy soils in the Senegal groundnut basin. This cost-effective method provides information on SOC thermal stability, which has been shown to be related qualitatively to biogeochemical stability of SOC. We sampled soils within two villages in agricultural plots representative of local agricultural systems, and in two local preserved areas (tree plantation and shrubby savanna). SOC concentrations ranged from 1.8-18.5 g.kg soil in the surface layer (0 - 10 cm) and from 1.5-11.3 g.kg(-1) soil in the 10 - 30 cm layer. SOC contents of cultivated soils decreased significantly (p-value addition of manure > millet residues left after harvest > no organic input. We found that the quantity and the quality of SOC are linked, and that both depend on land-use and agricultural practices, especially upon the type of organic inputs. Quantity of SOC and quality of SOM are correlated strongly in the tree plantation (R-2 = 0.98) and in the protected shrubby savanna (R = 0.97). They are also correlated significantly in cultivated soils receiving organic wastes (R-2 = 0.82), manure (R-2 from 0.74 and 0.91), or millet residues (R-2 = 0.91) but not in soils that receive no organic inputs. Indexes based upon Rock-Eval (R) pyrolysis were represented in an I/R diagram that illustrates the level of SOC stabilization. The indexes of the studied soils were plotted against comparable results from literature. Thermal signatures of the Senegalese Arenosols show an inversion of I and the R indexes compared to data from the literature. This result highlights SOC stabilization as a function of soil depth. Indeed, the refractory pool in the studied soils (where refractory pool ranged from 7.7-21.3 % in the 0-10 cm layer, and from 12.5-24.3 % in the 10 - 30 cm) was more abundant than in Ferralsols in natural conditions, where refractory pool ranged from 2 to 9%. The soil organic matter in these Arenosols while positively affected by organic inputs, is dominated by more or less labile forms that mineralize quickly: a quality that is excellent for productivity of these agrosystems, but not for mitigation of climate change in the long term

Assessment of the global toxicity of marine sediments from the Dakar peninsula (Senegal, West Africa)

International audienceMarine pollution in West Africa is major threat particularly around coastal megacities. We assess the chemical and ecotoxicological quality of the marine sediments in various submerged sampling sites of Dakar. Analysis revealed that sediments were slightly basic in which fine and coarse sands predominated. High percentages of total organic carbon were found sometime above 6%. Higher levels of heavy metal were reported than in previous studies. Chromium and nickel were above the Probable Effect Concentration. Low trophic level appeared not affected by the overall toxicity, while medium trophic level was more affected. Indeed, the vast majority (91%) of sites studied revealed a net percentage of Magallana gigas embryolarval developmental abnormality over 20%. The assessment of the global toxicity of marine sediments from the Dakar sites Studied (n = 11) seemed, almost, as a whole, to be in a poor ecotoxicological state calling to take measures to improve the sanitary condition of this marine feature