Addressing missing values in kernel-based multimodal biometric fusion using neutral point substitution

In multimodal biometric information fusion, it is common to encounter missing modalities in which matching cannot be performed. As a result, at the match score level, this implies that scores will be missing. We address the multimodal fusion problem involving missing modalities (scores) using support vector machines with the Neutral Point Substitution (NPS) method. The approach starts by processing each modality using a kernel. When a modality is missing, at the kernel level, the missing modality is substituted by one that is unbiased with regards to the classification, called a neutral point. Critically, unlike conventional missing-data substitution methods, explicit calculation of neutral points may be omitted by virtue of their implicit incorporation within the SVM training framework. Experiments based on the publicly available Biosecure DS2 multimodal (scores) data set shows that the SVM-NPS approach achieves very good generalization performance compared to the sum rule fusion, especially with severe missing modalities

Supervised selective kernel fusion for membrane protein prediction

Membrane protein prediction is a significant classification problem, requiring the integration of data derived from different sources such as protein sequences, gene expression, protein interactions etc. A generalized probabilistic approach for combining different data sources via supervised selective kernel fusion was proposed in our previous papers. It includes, as particular cases, SVM, Lasso SVM, Elastic Net SVM and others. In this paper we apply a further instantiation of this approach, the Supervised Selective Support Kernel SVM and demonstrate that the proposed approach achieves the top-rank position among the selective kernel fusion variants on benchmark data for membrane protein prediction. The method differs from the previous approaches in that it naturally derives a subset of “support kernels” (analogous to support objects within SVMs), thereby allowing the memory-efficient exclusion of significant numbers of irrelevant kernel matrixes from a decision rule in a manner particularly suited to membrane protein prediction

A Modified Neutral Point Method for Kernel-Based Fusion of Pattern-Recognition Modalities with Incomplete Data Sets

It is commonly the case in multi-modal pattern recognition that certain modality-specific object features are missing in the training set. We address here the missing data problem for kernel-based Support Vector Machines, in which each modality is represented by the respective kernel matrix over the set of training objects, such that the omission of a modality for some object manifests itself as a blank in the modality-specific kernel matrix at the relevant position. We propose to fill the blank positions in the collection of training kernel matrices via a variant of the Neutral Point Substitution (NPS) method, where the term ”neutral point” stands for the locus of points defined by the ”neutral hyperplane” in the hypothetical linear space produced by the respective kernel. The current method crucially differs from the previously developed neutral point approach in that it is capable of treating missing data in the training set on the same basis as missing data in the test set. It is therefore of potentially much wider applicability. We evaluate the method on the Biosecure DS2 data set

Electronic structure near the 1/8-anomaly in La-based cuprates

We report an angle resolved photoemission study of the electronic structure of the pseudogap state in \NdLSCO ($T_c<7$ K). Two opposite dispersing Fermi arcs are the main result of this study. The several scenarios that can explain this observation are discussed.Comment: A high-resolution version can be found at http://lns.web.psi.ch/lns/download/Pockets/arXiv.pd

Angiotensin II type 1 receptor polymorphisms and susceptibility to hypertension: A HuGE review

The angiotensin II type 1 receptor (AGTR1) plays an integral role in blood pressure control, and is implicated in the pathogenesis of hypertension. Polymorphisms within this gene have been extensively studied in association with hypertension; however, findings are conflicting. To clarify these data, we conducted a systematic review of association studies of AGTR1 polymorphisms and hypertension, and performed a meta-analysis of the rs5186 variant. Results show that the currently available literature is too heterogeneous to draw meaningful conclusions. The definition of hypertension and gender composition of individual studies helps to explain this heterogeneity. Although the structure and splicing pattern of AGTR1 would suggest a likely effect of polymorphisms within the promoter region on gene function, few studies have been conducted thus far. In conclusion, there is insufficient evidence that polymorphisms in the AGTR1 gene are risk factors for hypertension. However, most studies are inadequately powered, and larger well-designed studies of haplotypes are warranted

The excitation spectrum for weakly interacting bosons in a trap

We investigate the low-energy excitation spectrum of a Bose gas confined in a trap, with weak long-range repulsive interactions. In particular, we prove that the spectrum can be described in terms of the eigenvalues of an effective one-particle operator, as predicted by the Bogoliubov approximation.Comment: LaTeX, 32 page

A novel TRPC6 mutation in a family with podocytopathy and clinical variability

Abstract Background Mutation in several podocyte-specific genes have been noted to result in phenotypic heterogeneity. Herein, we report a novel, autosomal dominant TRPC6 mutation in a family with disease ranging from asymptomatic minimal change disease to end-stage kidney disease. Case presentation A 35 year old woman developed asymptomatic, nephrotic range proteinuria during pregnancy that did not resolve after delivery. Her mother had end-stage kidney disease of unknown etiology and her brother had asymptomatic proteinuria. Kidney biopsy revealed minimal change disease in both the proband and her brother. Genetic testing was performed in the proband and mother, revealing a novel frameshift mutation in TRPC6, D873fsX878. The proband continues to have subnephrotic range proteinuria and normal creatinine but her brother has since developed progressive chronic kidney disease. Conclusions The current case report underscores the heterogeneity of disease in podocytopathies and related genes. Genetic testing of podocyte genes is useful in order to understand the pathophysiologic processes underlying these overlapping diseases

Inter-specific aggression generates ant mosaics in canopies of primary tropical rainforest

The ant mosaic is a concept of the non-random spatial distribution of individual ant species in trees built upon the assumption of interspecific behavioural associations. However, colony identity and environmental variance may also play a role in species distribution. Here we assess the presence of ant mosaics in a primary forest ecosystem and whether they are structured by species' aggressive behaviours or by habitat filtering. We sampled arboreal ants from vertically stratified baits exposed in 225 canopy trees in a 9-ha plot of primary lowland forest in Papua New Guinea, the largest forest area surveyed to detect ant mosaics. We performed behavioural tests on conspecific ants from adjacent trees to determine the territories of individual colonies. We explored the environmental effects on the ant communities using information on the plot vegetation structure and topography. Furthermore, we created a novel statistical method to test for the community non-random spatial structure across the plot via spatial randomisation of individual colony territories. Finally, we linked spatial segregation among the four most common species to experimentally assessed rates of interspecies aggression. The ant communities comprised 57 species of highly variable abundance and vertical stratification. Ant community composition was spatially dependent, but it was not affected by tree species composition or canopy connectivity. Only local elevation had a significant but rather small effect. Individual colony territories ranged from one tree to 0.7 ha. Species were significantly over-dispersed, with their territory overlap significantly reduced. The level of aggression between pairs of the four most common species was positively correlated with their spatial segregation. Our study demonstrates the presence of ant mosaics in tropical pristine forest, which are maintained by interspecific aggression rather than habitat filtering, with vegetation structure having a rather small and indirect effect, probably linked to microclimate variability.publishedVersio