Lyman-alpha absorption around nearby galaxies

We have used STIS aboard HST to search for Lyman-alpha (Lya) absorption lines in the outer regions of eight nearby galaxies using background QSOs and AGN as probes. Lya lines are detected within a few hundred km/s of the systemic velocity of the galaxy in all cases. We conclude that a background line-of-sight which passes within 26-200 h-1 kpc of a foreground galaxy is likely to intercept low column density neutral hydrogen with log N(HI) >~ 13.0. The ubiquity of detections implies a covering factor of ~ 100% for low N(HI) gas around galaxies within 200 h-1 kpc. We discuss the difficulty in trying to associate individual absorption components with the selected galaxies and their neighbors, but show that by degrading our STIS data to lower resolutions, we are able to reproduce the anti-correlation of Lya equivalent width and impact parameter found at higher redshift. We also show that the equivalent width and column density of Lya complexes (when individual components are summed over ~ 1000 km/s) correlate well with a simple estimate of the volume density of galaxies brighter than M(B) = -17.5 at the same redshift as a Lya complex. We do not reject the hypothesis that the selected galaxies are directly responsible for the observed Lya lines, but our analysis indicates that absorption by clumpy intragroup gas is an equally likely explanation. (Abriged)Comment: Accepted for publication in Nov 20, 2002 issue of ApJ. Paper with all figures can be found at http://www.astro.princeton.edu/~dvb/lyapaper.ps (preferable). Minor typos fixe

How to Use Crowdfunding in Extension: A Relationship Education Example

Crowdfunding is a resource that allows individuals or groups to raise funds while simultaneously engaging relevant communities and, thus, is an important tool for Extension specialists. We provide recommended steps for successful crowdfunding, including tips for identifying a website, developing or refining a proposal, and crafting a marketing and campaign strategy. We use the successful crowdfunding of a relationship education program as an example

Watching movies unfold - a frame-by-frame analysis of the associated neural dynamics

Our lives unfold as sequences of events. We experience these events as seamless, although they are composed of individual images captured in between the interruptions imposed by eye blinks and saccades. Events typically involve visual imagery from the real world (scenes), and the hippocampus is frequently engaged in this context. It is unclear, however, whether the hippocampus would be similarly responsive to unfolding events that involve abstract imagery. Addressing this issue could provide insights into the nature of its contribution to event processing, with relevance for theories of hippocampal function. Consequently, during magnetoencephalography (MEG), we had female and male humans watch highly matched unfolding movie events composed of either scene image frames that reflected the real world, or frames depicting abstract patterns. We examined the evoked neuronal responses to each image frame along the time course of the movie events. Only one difference between the two conditions was evident, and that was during the viewing of the first image frame of events, detectable across frontotemporal sensors. Further probing of this difference using source reconstruction revealed greater engagement of a set of brain regions across parietal, frontal, premotor, and cerebellar cortices, with the largest change in broadband (1–30 Hz) power in the hippocampus during scene-based movie events. Hippocampal engagement during the first image frame of scene-based events could reflect its role in registering a recognizable context perhaps based on templates or schemas. The hippocampus, therefore, may help to set the scene for events very early on

Human Amniocytes Are Receptive to Chemically Induced Reprogramming to Pluripotency

Restoring pluripotency using chemical compounds alone would be a major step forward in developing clinical-grade pluripotent stem cells, but this has not yet been reported in human cells. We previously demonstrated that VPA_ AFS cells, human amniocytes cultivated with valproic acid (VPA) acquired functional pluripotency while remaining distinct from human embryonic stem cells (hESCs), questioning the relationship between the modulation of cell fate and molecular regulation of the pluripotency network. Here, we used single-cell analysis and functional assays to reveal that VPA treatment resulted in a homogeneous population of self-renewing non-transformed cells that fulfill the hallmarks of pluripotency, i.e., a short G1 phase, a dependence on glycolytic metabolism, expression of epigenetic modifications on histones 3 and 4, and reactivation of endogenous OCT4 and downstream targets at a lower level than that observed in hESCs. Mechanistic insights into the process of VPA-induced reprogramming revealed that it was dependent on OCT4 promoter activation, which was achieved independently of the PI3K (phosphatidylinositol 3-kinase)/ AKT/ mTOR (mammalian target of rapamycin) pathway or GSK3 beta inhibition but was concomitant with the presence of acetylated histones H3K9 and H3K56, which promote pluripotency. Our data identify, for the first time, the pluripotent transcriptional and molecular signature and metabolic status of human chemically induced pluripotent stem cells

<i>Escherichia coli</i> B2 strains prevalent in inflammatory bowel disease patients have distinct metabolic capabilities that enable colonization of intestinal mucosa

Abstract Background Escherichia coli is considered a leading bacterial trigger of inflammatory bowel disease (IBD). E. coli isolates from IBD patients primarily belong to phylogroup B2. Previous studies have focused on broad comparative genomic analysis of E. coli B2 isolates, and identified virulence factors that allow B2 strains to reside within human intestinal mucosa. Metabolic capabilities of E. coli strains have been shown to be related to their colonization site, but remain unexplored in IBD-associated strains. Results In this study, we utilized pan-genome analysis and genome-scale models (GEMs) of metabolism to study metabolic capabilities of IBD-associated E. coli B2 strains. The study yielded three results: i) Pan-genome analysis of 110 E. coli strains (including 53 isolates from IBD studies) revealed discriminating metabolic genes between B2 strains and other strains; ii) Both comparative genomic analysis and GEMs suggested that B2 strains have an advantage in degrading and utilizing sugars derived from mucus glycan, and iii) GEMs revealed distinct metabolic features in B2 strains that potentially allow them to utilize energy more efficiently. For example, B2 strains lack the enzymes to degrade amadori products, but instead rely on neighboring bacteria to convert these substrates into a more readily usable and potentially less sought after product. Conclusions Taken together, these results suggest that the metabolic capabilities of B2 strains vary significantly from those of other strains, enabling B2 strains to colonize intestinal mucosa.The results from this study motivate a broad experimental assessment of the nutritional effects on E. coli B2 pathophysiology in IBD patients

A Detailed Look at Chemical Abundances in Magellanic Cloud Planetary Nebulae. I. The Small Magellanic Cloud

We present an analysis of elemental abundances of He, N, O, Ne, S, and Ar in Magellanic Cloud planetary nebulae (PNe), and focus initially on 14 PNe in the Small Magellanic Cloud (SMC). We derived the abundances from a combination of deep, high dispersion optical spectra, as well as mid-infrared (IR) spectra from the Spitzer Space Telescope. A detailed comparison with prior SMC PN studies shows that significant variations among authors of relative emission line flux determinations lead to systematic discrepancies in derived elemental abundances between studies that are >~0.15 dex, in spite of similar analysis methods. We used ionic abundances derived from IR emission lines, including those from ionization stages not observable in the optical, to examine the accuracy of some commonly used recipes for ionization correction factors (ICFs). These ICFs, which were developed for ions observed in the optical and ultraviolet, relate ionic abundances to total elemental abundances. We find that most of these ICFs work very well even in the limit of substantially sub-Solar metallicities, except for PNe with very high ionization. Our abundance analysis shows enhancements of He and N that are predicted from prior dredge-up processes of the progenitors on the AGB, as well as the well known correlations among O, Ne, S, and Ar that are little affected by nucleosynthesis in this mass range. We identified MG_8 as an interesting limiting case of a PN central star with a ~3.5 M_sun progenitor in which hot-bottom burning did not occur in its prior AGB evolution. We find no evidence for O depletion in the progenitor AGB stars via the O-N cycle, which is consistent with predictions for lower-mass stars. We also find low S/O ratios relative to SMC H_II regions, with a deficit comparable to what has been found for Galactic PNe.Comment: 9 figures, 6 tables; to be published in Ap