The Pairwise Peculiar Velocity Dispersion of Galaxies: Effects of the Infall

We study the reliability of the reconstruction method which uses a modelling of the redshift distortions of the two-point correlation function to estimate the pairwise peculiar velocity dispersion of galaxies. In particular, the dependence of this quantity on different models for the infall velocity is examined for the Las Campanas Redshift Survey. We make extensive use of numerical simulations and of mock catalogs derived from them to discuss the effect of a self-similar infall model, of zero infall, and of the real infall taken from the simulation. The implications for two recent discrepant determinations of the pairwise velocity dispersion for this survey are discussed.Comment: minor changes in the discussion; accepted for publication in ApJ; 8 pages with 2 figures include

The cross-correlation between galaxies of different luminosities and Colors

We study the cross-correlation between galaxies of different luminosities and colors, using a sample selected from the SDSS Dr 4. Galaxies are divided into 6 samples according to luminosity, and each of these samples is divided into red and blue subsamples. Projected auto-correlation and cross-correlation is estimated for these subsample. At projected separations r_p > 1\mpch, all correlation functions are roughly parallel, although the correlation amplitude depends systematically on luminosity and color. On r_p < 1\mpch, the auto- and cross-correlation functions of red galaxies are significantly enhanced relative to the corresponding power laws obtained on larger scales. Such enhancement is absent for blue galaxies and in the cross-correlation between red and blue galaxies. We esimate the relative bias factor on scales r > 1\mpch for each subsample using its auto-correlation function and cross-correlation functions. The relative bias factors obtained from different methods are similar. For blue galaxies the luminosity-dependence of the relative bias is strong over the luminosity range probed (-23.0<M_r < -18.0),but for red galaxies the dependence is weaker and becomes insignificant for luminosities below L^*. To examine whether a significant stochastic/nonlinear component exists in the bias relation, we study the ratio R_ij= W_{ii}W_{jj}/W_{ij}^2, where W_{ij} is the projected correlation between subsample i and j. We find that the values of R_ij are all consistent with 1 for all-all, red-red and blue-blue samples, however significantly larger than 1 for red-blue samples. For faint red - faint blue samples the values of R_{ij} are as high as ~ 2 on small scales r_p < 1 \mpch and decrease with increasing r_p.Comment: 25 pages, 18 figures, Accepted for publication in Ap

Scaling properties of the redshift power spectrum: theoretical models

We report the results of an analysis of the redshift power spectrum $P^S(k,\mu)$ in three typical Cold Dark Matter (CDM) cosmological models, where $\mu$ is the cosine of the angle between the wave vector and the line-of-sight. Two distinct biased tracers derived from the primordial density peaks of Bardeen et al. and the cluster-underweight model of Jing, Mo, & B\"orner are considered in addition to the pure dark matter models. Based on a large set of high resolution simulations, we have measured the redshift power spectrum for the three tracers from the linear to the nonlinear regime. We investigate the validity of the relation - guessed from linear theory - in the nonlinear regime $$P^S(k,\mu)=P^R(k)[1+\beta\mu^2]^2D(k,\mu,\sigma_{12}(k)),$$ where $P^R(k)$ is the real space power spectrum, and $\beta$ equals $\Omega_0^{0.6}/b_l$. The damping function $D$ which should generally depend on $k$, $\mu$, and $\sigma_{12}(k)$, is found to be a function of only one variable $k\mu\sigma_{12}(k)$. This scaling behavior extends into the nonlinear regime, while $D$ can be accurately expressed as a Lorentz function - well known from linear theory - for values $D > 0.1$. The difference between $\sigma_{12}(k)$ and the pairwise velocity dispersion defined by the 3-D peculiar velocity of the simulations (taking $r=1/k$) is about 15%. Therefore $\sigma_{12}(k)$ is a good indicator of the pairwise velocity dispersion. The exact functional form of $D$ depends on the cosmological model and on the bias scheme. We have given an accurate fitting formula for the functional form of $D$ for the models studied.Comment: accepted for publication in ApJ;24 pages with 7 figures include

Spatial correlation functions and the pairwise peculiar velocity dispersion of galaxies in the PSCz survey: implications for the galaxy biasing in cold dark matter models

We report on the measurement of the two-point correlation function, and the pairwise peculiar velocity of galaxies in the IRAS PSCz survey. We compute these statistics first in redshift space, and then obtain the projected functions which have simple relations to the real-space correlation functions on the basis of the method developed earlier in analyzing the Las Campanas Redshift Survey (LCRS) by Jing, Mo, & B\"orner (1998). We find that the real space two-point correlation function can be fitted to a power law $\xi(r) = (r_0/r)^{\gamma}$ with $\gamma=1.69$ and r_0=3.70 \mpc. The pairwise peculiar velocity dispersion $\sigma_{12}(r_p)$ is close to 400 \kms at r_p=3\mpc and decreases to about 150 \kms at r_p \approx 0.2 \mpc. These values are significantly lower than those obtained from the LCRS. In order to understand the implications of those measurements on the galaxy biasing, we construct mock samples for a low density spatially-flat cold dark matter model ($\Omega_0 = 0.3$, $\lambda_0=0.7$, $\Gamma=0.2$, $\sigma_8=1$) using a set of high-resolution N-body simulations. Applying a stronger cluster-underweight biasing ($\propto M^{-0.25}$) than for the LCRS ($\propto M^{-0.08}$), we are able to reproduce these observational data, except for the strong decrease of the pairwise peculiar velocity at small separations. This is qualitatively ascribed to the different morphological mixture of galaxies in the two catalogues. Disk-dominated galaxy samples drawn from the theoretically constructed GIF catalog yield results rather similar to our mock samples with the simple cluster-underweight biasing.Comment: accepted for publication in ApJ; 24 pages with 9 figure

The Three-point Correlation Function of Galaxies Determined from the 2dF Galaxy Redshift Survey

In a detailed analysis of the three point correlation function (3PCF) for the 2dF Galaxy Redshift Survey we have accurately measured the 3PCF for galaxies of different luminosity. The 3PCF amplitudes [\Qsu or \Qrpu] of the galaxies generally decrease with increasing triangle size and increase with the shape parameter $v$, in qualitative agreement with the predictions for the clustering of dark matter in popular hierarchical CDM models. The 2dFGRS results agree well with the results of Jing & B\"orner for the Las Camapanas Redshift Survey (LCRS), though the measurement accuracy is greatly improved in the present study. The dependence of the 3PCF on luminosity is not significant, but there seems to be a trend for the brightest galaxy sample to have a lower amplitude than the fainter ones. Comparing the measured 3PCF amplitudes [\Qsu or \Qrpu] to the prediction of a WMAP concordance model, we find that the measured values are consistently lower than the predicted ones for dark matter. This is most pronounced for the brightest galaxies, for which about one-half of the predicted $Q$ value provides a good description of \Qrpu for the 2dFGRS data. For a less luminous sample, the $Q$ values are also smaller than in the dark matter model on small scales, but on scales larger than s=8 \mpc and r_p=3.25 \mpc they reach the model values. We discuss implications for current theories of galaxy formation.Comment: 39 pages, 18 figures, ApJ, published version; minor changes to the previous versio

Semi-analytical model of galaxy formation with high-resolution N-body simulations

We model the galaxy formation in a series of high-resolution N-body simulations using the semi-analytical approach. Unlike many earlier investigations based on semi-analytical models, we make use of the subhalos resolved in the $N$-body simulations to follow the mergers of galaxies in dark halos, and we show that this is pivotal in modeling correctly the galaxy luminosity function at the bright end and the bimodal nature of galaxy color distribution. Mergers of galaxies based on subhalos also result in many more bright red galaxies at high $z$. The semi-analytical model we adopt is similar to those used in earlier semi-analytical studies, except that we consider the effect of a prolonged cooling in small halos and that we explicitly follow the chemical enrichment in the interstellar medium. We use our model to make predictions for the properties of the galaxy population at low redshift and compare them with various current observations. We find that our model predictions can match the luminosity functions of galaxies in various wavebands redder than the u-band. The shape of the luminosity function at bright end is well reproduced if galaxy mergers are modeled with the merger trees of subhalos and the steep faint-end slope can be moderated if the gas cooling time in low-mass halos is comparable to the age of the universe. The model with subhalos resolved can reproduce the main features in the observed color bimodal distribution, though it still predicts too many bright blue galaxies. The same model can also match the color-magnitude relation for elliptical galaxies in clusters, the metallicity-luminosity relation.Comment: 57 pages, 1 table, 18 figures, a new figure added, more discussion on color bimodality, to appear in Ap

The decline of the Serengeti Thomson's gazelle population

The population of Thomson's gazelles in the Serengeti National Park, Tanzania has declined by almost two thirds over a 13 year period. In the early 1970s, numbers stood at 0.66 million animals but had decreased to less than 0.25 million animals in 1985 as estimated by 5 different censuses using two different counting techniques. Predation, interspecific competition and disease are all factors that could have contributed to this decline, and at least one of these factors, predation, could now prevent the Thomson's gazelle population from increasing.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/47770/1/442_2004_Article_BF00376974.pd

TEOSINTE BRANCHED1 regulates height and stem internode length in bread wheat

Regulation of plant height and stem elongation has contributed significantly to improvement of cereal productivity by reducing lodging and improving distribution of assimilates to the inflorescence and grain. In wheat, genetic control of height has been largely contributed by the Reduced height-1 alleles that confer gibberellin insensitivity; the beneficial effects of these alleles are associated with less favourable effects involving seedling emergence, grain quality, and inflorescence architecture that have driven new research investigating genetic variation of stem growth. Here, we show that TEOSINTE BRANCHED1 (TB1) regulates height of wheat, with TB1 being expressed at low levels in nodes of the main culm prior to elongation, and increased dosage of TB1 restricting elongation of stem internodes. The effect of TB1 on stem growth is not accompanied by poor seedling emergence, as transgenic lines with increased activity of TB1 form longer coleoptiles than null transgenic controls. Analysis of height in a multiparent mapping population also showed that allelic variation for TB1 on the B genome influences height, with plants containing the variant TB-B1b allele being taller than those with the wild-type TB-B1a allele. Our results show that TB1 restricts height and stem elongation in wheat, suggesting that variant alleles that alter the expression or function of TB1 could be used as a new source of genetic diversity for optimizing architecture of wheat in breeding programmes

Retinoids cause apoptosis in pancreatic cancer cells via activation of RAR-γ and altered expression of Bcl-2/Bax

All-trans-retinoic acid and 9-cis-retinoic acid have been reported to have inhibitory effects on pancreatic adenocarcinoma cells and we have shown that this is partly due to induction of apoptosis. In this study, the mechanisms whereby 9-cis-retinoic acid induces apoptosis in these cells were investigated. An involvement of the Bcl-2 family of proteins was shown, such that 9-cis-retinoic acid causes a decrease in the Bcl-2/Bax ratio. Overexpression of Bcl-2 also resulted in inhibition of apoptosis induced by 9-cis-retinoic acid. Furthermore, two broad-range caspase inhibitors blocked DNA fragmentation induced by 9-cis-retinoic acid, but had no effect on viability defined by mitochondrial activity. Using synthetic retinoids, which bind selectively to specific retinoic acid receptor subtypes, we further established that activation of retinoic acid receptor-γ is essential for induction of apoptosis. Only pan-retinoic acid receptor and retinoic acid receptor-γ selective agonists reduced viability and a cell line expressing very low levels of retinoic acid receptor-γ is resistant to the effects of 9-cis-retinoic acid. A retinoic acid receptor-β/γ selective antagonist also suppressed the cytotoxic effects of 9-cis-retinoic acid in a dose-dependent manner. This study provides important insight into the mechanisms involved in suppression of pancreatic tumour cell growth by retinoids. Our results encourage further work evaluating the clinical use of receptor subtype selective retinoids in pancreatic carcinoma

Naturally Occurring Triggers that Induce Apoptosis-Like Programmed Cell Death in Plasmodium berghei Ookinetes

Several protozoan parasites have been shown to undergo a form of programmed cell death that exhibits morphological features associated with metazoan apoptosis. These include the rodent malaria parasite, Plasmodium berghei. Malaria zygotes develop in the mosquito midgut lumen, forming motile ookinetes. Up to 50% of these exhibit phenotypic markers of apoptosis; as do those grown in culture. We hypothesised that naturally occurring signals induce many ookinetes to undergo apoptosis before midgut traversal. To determine whether nitric oxide and reactive oxygen species act as such triggers, ookinetes were cultured with donors of these molecules. Exposure to the nitric oxide donor SNP induced a significant increase in ookinetes with condensed nuclear chromatin, activated caspase-like molecules and translocation of phosphatidylserine that was dose and time related. Results from an assay that detects the potential-dependent accumulation of aggregates of JC-1 in mitochondria suggested that nitric oxide does not operate via loss of mitochondrial membrane potential. L-DOPA (reactive oxygen species donor) also caused apoptosis in a dose and time dependent manner. Removal of white blood cells significantly decreased ookinetes exhibiting a marker of apoptosis in vitro. Inhibition of the activity of nitric oxide synthase in the mosquito midgut epithelium using L-NAME significantly decreased the proportion of apoptotic ookinetes and increased the number of oocysts that developed. Introduction of a nitric oxide donor into the blood meal had no effect on mosquito longevity but did reduce prevalence and intensity of infection. Thus, nitric oxide and reactive oxygen species are triggers of apoptosis in Plasmodium ookinetes. They occur naturally in the mosquito midgut lumen, sourced from infected blood and mosquito tissue. Up regulation of mosquito nitric oxide synthase activity has potential as a transmission blocking strategy