Isolation and characterization of a yeast gene, MPD1, the overexpression of which suppresses inviability caused by protein disulfide isomerase depletion

AbstractMPD1, a yeast gene the overexpression of which suppresses the inviability caused by the loss of protein disulfide isomerase (PDI) was isolated and characterized. The MPD1 gene product retained a single disulfide isomerase active site sequence (APWCGHCK), an N-terminal putative signal sequence, and a C-terminal endoplasmic reticulum (ER) retention signal, and was a novel member of the PDI family. The gene product, identified in yeast extract, contained core size carbohydrates. MPD1 was not essential for growth, but overexpression of the gene suppressed the maturation defect of carboxypeptidase Y caused by PDI1 deletion, indicative of the related function to PDI in the yeast ER

Managing understory light conditions in boreal mixedwoods through variation in the intensity and spatial pattern of harvest: A modelling approach

In the context of partial harvesting, adequately managing post-harvest light conditions are essential to obtain a desired composition of tree species regeneration. The objective of this study was to determine how varying the intensity and spatial pattern of harvest would affect understory light conditions in boreal mixedwood stands of northwestern Quebec using the spatially explicit SORTIE-ND light model. The model was evaluated based on comparisons of observed and predicted light levels in both mapped and un-mapped plots. In mapped plots, reasonably accurate predictions of the overall variation in light levels were obtained, but predictions tended to lack spatial precision. In un-mapped plots, SORTIE-ND accurately predicted stand-level mean GLI (Gap Light Index) under a range of harvest intensities. The model was then used to simulate nine silvicultural treatments based on combinations of three intensities of overstory removal (30%, 45% and 60% of basal area) and three harvest patterns (uniform, narrow strips, large gaps). Simulations showed that increasing overstory removal had less impact on light conditions with uniform harvests, and a more marked effect with more aggregated harvest patterns. Whatever the harvest intensity, uniform cuts almost never created high light conditions (GLI > 50%). Gap cuts, on the other hand, resulted in up to 40% of microsites receiving GLI > 50%. Our results suggest that either a 30% strip or gap cut or a 45–60% uniform partial harvest could be used to accelerate the transition from an aspen dominated composition to a mixedwood stand because both types of cut generate the greatest proportion of moderately low light levels (e.g., 15–40% GLI). These light levels tend to favour an accelerated growth response among shade-tolerant conifers, while preventing excessive recruitment of shade-intolerant species. A better understanding of how spatial patterns of harvest interact with tree removal intensity to affect understory light conditions can provide opportunities for designing silvicultural prescriptions that are tailored to species’ traits and better suited to meet a variety of management objectives

Status and prospects of liver cirrhosis treatment by using bone marrow-derived cells and mesenchymal cells

In 2003, we started autologous bone marrow cell infusion (ABMi) therapy for treating liver cirrhosis. ABMi therapy uses 400 mL of autologous bone marrow obtained under general anesthesia and infused mononuclear cells from the peripheral vein. The clinical study expanded and we treated liver cirrhosis induced by HCV and HBV infection and alcohol consumption. We found that the ABMi therapy was effective for cirrhosis patients and now we are treating patients with combined HIV and HCV infection and with metabolic syndrome-induced liver cirrhosis. Currently, to substantiate our findings that liver cirrhosis can be successfully treated by the ABMi therapy, we are conducting randomized multicenter clinical studies designated "Advanced medical technology B" for HCV-related liver cirrhosis in Japan. On the basis of our clinical study, we developed a proof-of-concept showing that infusion of bone marrow cells (BMCs) improved liver fibrosis and sequentially activated proliferation of hepatic progenitor cells and hepatocytes, further promoting restoration of liver functions. To treat patients with severe forms of liver cirrhosis, we continued translational research to develop less invasive therapies by using mesenchymal stem cells derived from bone marrow. We obtained a small quantity of BMCs under local anesthesia and expanded them into mesenchymal stem cells that will then be used for treating cirrhosis. In this review, we present our strategy to apply the results of our laboratory research to clinical studies. Copyright © 2014, Mary Ann Liebert, Inc

A linkage between flowering phenology and fruit-set success of alpine plant communities with reference to the seasonality and pollination effectiveness of bees and flies

To clarify the linkage between flowering phenology and pollination success in alpine plant communities, we quantified the seasonality of flower visitors, the temporal transition of floral resources, and the variation in pollination success of alpine plants in northern Japan. Bumble bees, syrphid flies, and non-syrphid flies were the predominant flower visitors. Foraging activity of bumble bees increased toward the late flowering period reflecting the life cycle of colony development. The activity of syrphid flies was sensitive to ambient temperature, while that of non-syrphid flies remained high throughout the season. Flower production of bee-pollinated plants fluctuated significantly between years with a bimodal pattern peaking in the early and late periods, while flower production of fly-pollinated plants was less variable between years. Fruit-set success of bee-pollinated plants increased considerably from the early to the late flowering period, while the trend for fly-pollinated plants was less marked. Three times more visits of dipteran insects are necessary for fly-pollinated plants to achieve fruiting success comparable to bee-pollinated plants. Bumble bees are potentially excellent pollinators, but the visitation frequency is low early in the season. Lower pollination ability of dipteran insects may be compensated for by abundant flower visits. The relationships between flowering phenology and fruit-set success of alpine plant communities highly depend on the type of pollinators

Evaluation of Three-Dimensional Leaf Distribution within a Closed Canopy Based on Low-Cost Laser Scanning Data during Leafless Season

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Three-Dimensional Inversion of Fluid Flow Electromagnetic Method to Visualize Geothermal Fluid Flow

ABSTRACT Fluid flow electromagnetic (FFEM) method is a new geophysical method to monitor dynamic behavior of subsurface fluid flow. The movement of subsurface fluid generates electric field. The phenomenon called "streaming potential" is known as an electrokinetic phenomenon. Both electric and magnetic fields due to subsurface fluid flow are observed at multiple stations in the FFEM method. The distribution of electric and magnetic fields is related to the movement of subsurface fluid. The FFEM method is applicable not only for monitoring geothermal reservoir but also for monitoring oil and groundwater reservoirs. In order to understand the qualitative characteristics of electric and magnetic fields caused by subsurface fluid flow, a 3-D FDM program that can calculate static electric and magnetic fields for arbitrary resistivity distribution was developed. As a result of some numerical simulations using this program, it was found that a vertical magnetic field is effective for delineating resistivity boundaries like geological faults. The 3-D inversion program was also developed to determine the location and strength of current sources that are related to the fluid source and sink. Although non-linear least squares method was applied at first, it was not effective because of the high flexibility of unknown parameters. Then Particle Swarm Optimization (PSO), that is one of metaheuristics, was utilized for the 3-D FFEM inversion. As a result of test inversions using simulation data, the 3-D inversion program using PSO was found to be effective for determining both the location and strength of a subsurface current source