Testing Foundations of Biological Scaling Theory Using Automated Measurements of Vascular Networks

Scientists have long sought to understand how vascular networks supply blood and oxygen to cells throughout the body. Recent work focuses on principles that constrain how vessel size changes through branching generations from the aorta to capillaries and uses scaling exponents to quantify these changes. Prominent scaling theories predict that combinations of these exponents explain how metabolic, growth, and other biological rates vary with body size. Nevertheless, direct measurements of individual vessel segments have been limited because existing techniques for measuring vasculature are invasive, time consuming, and technically difficult. We developed software that extracts the length, radius, and connectivity of in vivo vessels from contrast-enhanced 3D Magnetic Resonance Angiography. Using data from 20 human subjects, we calculated scaling exponents by four methods--two derived from local properties of branching junctions and two from whole-network properties. Although these methods are often used interchangeably in the literature, we do not find general agreement between these methods, particularly for vessel lengths. Measurements for length of vessels also diverge from theoretical values, but those for radius show stronger agreement. Our results demonstrate that vascular network models cannot ignore certain complexities of real vascular systems and indicate the need to discover new principles regarding vessel lengths

On the Minimum Distance of Generalized Spatially Coupled LDPC Codes

Families of generalized spatially-coupled low-density parity-check (GSC-LDPC) code ensembles can be formed by terminating protograph-based generalized LDPC convolutional (GLDPCC) codes. It has previously been shown that ensembles of GSC-LDPC codes constructed from a protograph have better iterative decoding thresholds than their block code counterparts, and that, for large termination lengths, their thresholds coincide with the maximum a-posteriori (MAP) decoding threshold of the underlying generalized LDPC block code ensemble. Here we show that, in addition to their excellent iterative decoding thresholds, ensembles of GSC-LDPC codes are asymptotically good and have large minimum distance growth rates.Comment: Submitted to the IEEE International Symposium on Information Theory 201

Spatially Coupled LDPC Codes Constructed from Protographs

In this paper, we construct protograph-based spatially coupled low-density parity-check (SC-LDPC) codes by coupling together a series of L disjoint, or uncoupled, LDPC code Tanner graphs into a single coupled chain. By varying L, we obtain a flexible family of code ensembles with varying rates and frame lengths that can share the same encoding and decoding architecture for arbitrary L. We demonstrate that the resulting codes combine the best features of optimized irregular and regular codes in one design: capacity approaching iterative belief propagation (BP) decoding thresholds and linear growth of minimum distance with block length. In particular, we show that, for sufficiently large L, the BP thresholds on both the binary erasure channel (BEC) and the binary-input additive white Gaussian noise channel (AWGNC) saturate to a particular value significantly better than the BP decoding threshold and numerically indistinguishable from the optimal maximum a-posteriori (MAP) decoding threshold of the uncoupled LDPC code. When all variable nodes in the coupled chain have degree greater than two, asymptotically the error probability converges at least doubly exponentially with decoding iterations and we obtain sequences of asymptotically good LDPC codes with fast convergence rates and BP thresholds close to the Shannon limit. Further, the gap to capacity decreases as the density of the graph increases, opening up a new way to construct capacity achieving codes on memoryless binary-input symmetric-output (MBS) channels with low-complexity BP decoding.Comment: Submitted to the IEEE Transactions on Information Theor

The transient response of global-mean precipitation to increasing carbon dioxide levels

The transient response of global-mean precipitation to an increase in atmospheric carbon dioxide levels of 1% yr(-1) is investigated in 13 fully coupled atmosphere-ocean general circulation models (AOGCMs) and compared to a period of stabilization. During the period of stabilization, when carbon dioxide levels are held constant at twice their unperturbed level and the climate left to warm, precipitation increases at a rate of similar to 2.4% per unit of global-mean surface-air-temperature change in the AOGCMs. However, when carbon dioxide levels are increasing, precipitation increases at a smaller rate of similar to 1.5% per unit of global-mean surface-air-temperature change. This difference can be understood by decomposing the precipitation response into an increase from the response to the global surface-temperature increase (and the climate feedbacks it induces), and a fast atmospheric response to the carbon dioxide radiative forcing that acts to decrease precipitation. According to the multi-model mean, stabilizing atmospheric levels of carbon dioxide would lead to a greater rate of precipitation change per unit of global surface-temperature change

Quantum control of spin-correlations in ultracold lattice gases

We demonstrate that it is possible to prepare a lattice gas of ultracold atoms with a desired non-classical spin-correlation function using atom-light interaction of the kind routinely employed in quantum spin polarization spectroscopy. Our method is based on quantum non-demolition (QND) measurement and feedback, and allows in particular to create on demand exponentially or algebraically decaying correlations, as well as a certain degree of multi-partite entanglement.Comment: 2 figure

A survey of thermodynamic properties of the compounds of the elements CHNOPS Progress report, 1 Oct. - 31 Dec. 1966

Thermodynamic properties for compounds of the elements carbon, hydrogen, nitrogen, oxygen, phosphorus, and sulfu