Using genotype abundance to improve phylogenetic inference

Modern biological techniques enable very dense genetic sampling of unfolding evolutionary histories, and thus frequently sample some genotypes multiple times. This motivates strategies to incorporate genotype abundance information in phylogenetic inference. In this paper, we synthesize a stochastic process model with standard sequence-based phylogenetic optimality, and show that tree estimation is substantially improved by doing so. Our method is validated with extensive simulations and an experimental single-cell lineage tracing study of germinal center B cell receptor affinity maturation

3D CAMERAS ACQUISITIONS FOR THE DOCUMENTATION OF CULTURAL HERITAGE

Abstract. Photography has always been considered as a valid tool to acquire information about reality. Nowadays, its versatility, together with the development of new techniques and technologies, allows to use it in different fields of application. Particularly, in the digitization of built heritage, photography not only enables to understand and document historical and architectural artifacts but also to acquire morphological and geometrical data about them with automated digital photogrammetry. Nowadays, photogrammetry enables many tools to give virtual casts of reality by showing it in the way of point cloud. Although they can have metric reliability and visual quality, traditional instruments &amp;ndash; such as monoscopic cameras &amp;ndash; involve a careful planning of the campaign phase and a long acquisition and processing time. On the contrary, the most recent ones, based on the integration of different sensors and cameras, try to reduce the gap between time and results. The latter include some systems of indoor mapping who, thanks to 360&amp;deg; acquisitions and SLAM technology, reconstruct the original scene in real time in great detail and with a photorealistic rendering. This study is aimed at reporting a research evaluating metric reliability and the level of survey detail with a Matterport Pro2 3D motorized rotating camera, equipped with SLAM technology, whose results have been compared with point clouds obtained by image-based and range-based processes.</p

Dimerization and low-dimensional magnetism in nanocrystalline TiO2 semiconductors doped by Fe and Co

The report is devoted to an analysis of the structural and magnetic state of the nanocrystalline diluted magnetic semiconductors based on TiO2 doped with Fe and Co atoms. Structural and magnetic characterization of samples was carried out using X-ray diffraction (XRD) analysis, transmission electron microscopy (TEM), X-ray absorption spectroscopy (XAS), electron paramagnetic resonance (EPR) spectroscopy, SQUID magnetometry, and the density functional theory (DFT) calculations. Analysis of the experimental data suggests the presence of non-interacting paramagnetic Fe3+ and Co2+ ions in the high-spin state and negative exchange interactions between them. The important conclusions is that the distribution of dopants in the TiO2 matrix, even at low concentrations of 3d-metal dopant (less than one percent), is not random, but the 3d ions localization and dimerization is observed both on the surface and in the nanoparticles core. Thus, in the paper the quantum mechanical model for describing the magnetic properties of TiO2:(Fe, Co) was suggested. The model operates only with two parameters: paramagnetic contribution of non-interacting 3d-ions and dimers having different exchange interactions between 3d magnetic carriers. © Published under licence by IOP Publishing Ltd

Application of Nanoparticles with the Structure of the Metal Nucleus - Carbon Enclosure in Biology and Medicine

The study was carried out with the financial support of the Russian Foundation for Basic Research in the framework of the research project No. 18-33-00785

Unconventional magnetism of non-uniform distribution of Co in TiO2 nanoparticles

High-resolution transmission electron microscopy (HRTEM), X-ray diffraction (XRD) analysis, electron paramagnetic resonance (EPR), X-ray absorption spectroscopy (XAS), magnetic methods, and density-functional theory (DFT) calculations were applied for the investigations of Co-doped anatase TiO2 nanoparticles (∼20 nm). It was found that high-spin Co2+ ions prefer to occupy the interstitial positions in the TiO2 lattice which are the most energetically favourable in compare to the substitutional those. A quantum mechanical model which operates mainly on two types of Co2+ – Co2+ dimers with different negative exchange interactions and the non-interacting paramagnetic Co2+ ions provides a satisfactorily description of magnetic properties for the TiO2:Co system. © 2020 Elsevier B.V.Russian Foundation for Basic Research. Ministry of Science and Higher Education of the Russian Federatio

Spectral and kinetic features of thermoluminescence in hexagonal boron nitride powder after UV-irradiation

Thermally stimulated luminescence (TL) from UV-irradiated h-BN powder synthesized using carbamide technique was studied. Three TL peaks at T max = 380, 500 and 600 K during linear heating with 2 K/s rate in RT - 773 K temperature range were observed. It was found that the 2.90 and 3.25 eV emission bands, which were related with recombination centers on the basis of VN and BO--complexes, dominate in TL spectra of h-BN. Experimental TL glow curves were analyzed in terms of general order kinetics and energy parameters of responsible capture levels were estimated. It was shown, considering the independent data on the luminescent properties of hexagonal boron nitride in different structural states, that TL peaks at 380 K and 600 K were due to traps based on the one-boron and the three-boron centers with thermal depth EA = 0.7 and 1.0 eV, respectively. The possible origin of the trap with EA = 1.6 eV, responsible for the TL peak at 500 K, is discussed. © 2013 Elsevier B.V. All rights reserved