Towards a Comparative Map of White Clover (Trifolium Repens) and Barrel Medic (Medicago Truncatula)

Grassland is of pivotal importance to the Irish agricultural industry. This dependence of grass is reflected in the large proportion of land area under grass, approx. 80% of the total land acreage in Ireland. The presence of white clover (Trifolium repens L.) in grassland significantly improves the overall nutritional value of the forage by increasing the relative amounts of nitrogen present. Genetic improvement of white clover through breeding of varieties should increase the productivity of grasslands. Advances in plant biotechnology offer the possibility of developing tools that will radically enhance our ability to breed improved plant varieties. The objective of this study is (1) to construct a genetic map of white clover and (2) to assess the level of genome synteny of white clover and M. truncatula (the model for legume species) with the use of different molecular markers developed in M. truncatula

Alternative optical concept for electron cyclotron emission imaging

The implementation of advanced electron cyclotron emission imaging (ECEI) systems on tokamak experiments has revolutionized the diagnosis of magnetohydrodynamic (MHD) activities and improved our understanding of instabilities, which lead to disruptions. It is therefore desirable to have an ECEI system on the ITER tokamak. However, the large size of optical components in presently used ECEI systems have, up to now, precluded the implementation of an ECEI system on ITER. This paper describes a new optical ECEI concept that employs a single spherical mirror as the only optical component and exploits the astigmatism of such a mirror to produce an image with one-dimensional spatial resolution on the detector. Since this alternative approach would only require a thin slit as the viewing port to the plasma, it would make the implementation of an ECEI system on ITER feasible. The results obtained from proof-of-principle experiments with a 125 GHz microwave system are presented. (C) 2014 AIP Publishing LLC

A hybrid next generation transcript sequencing-based approach to identify allelic and homeolog-specific single nucleotide polymorphisms in allotetraploid white clover

peer-reviewedBackground: White clover (Trifolium repens L.) is an allotetraploid species possessing two highly collinear ancestral sub-genomes. The apparent existence of highly similar homeolog copies for the majority of genes in white clover is problematic for the development of genome-based resources in the species. This is especially true for the development of genetic markers based on single nucleotide polymorphisms (SNPs), since it is difficult to distinguish between homeolog-specific and allelic variants. Robust methods for categorising single nucleotide variants as allelic or homeolog-specific in large transcript datasets are required. We illustrate one potential approach in this study. Results: We used 454-pyrosequencing sequencing to generate ~760,000 transcript sequences from an 8th generation white clover inbred line. These were assembled and partially annotated to yield a reference transcript set comprising 71,545 sequences. We subsequently performed Illumina sequencing on three further white clover samples, generating 14 million transcript reads from a mixed sample comprising 24 divergent white clover genotypes, and 50 million reads on two further eighth generation white clover inbred lines. Mapping these reads to the reference transcript set allowed us to develop a significant SNP resource for white clover, and to partition the SNPs from the inbred lines into categories reflecting allelic or homeolog-specific variation. The potential for using haplotype reconstruction and progenitor genome comparison to assign haplotypes to specific ancestral sub-genomes of white clover is demonstrated for sequences corresponding to genes encoding dehydration responsive element binding protein and acyl-coA oxidase. Conclusions: In total, 208,854 independent SNPs in 31,715 reference sequences were discovered, approximately three quarters of which were categorised as representing allelic or homeolog-specific variation using two inbred lines. This represents a significant resource for white clover genomics and genetics studies. We discuss the potential to extend the analysis to identify a “core set” of ancestrally derived homeolog specific variants in white clover.Department of Agriculture Food & the Marine, Ireland - Research Stimulus Fund (RSF 07–566

The structural invisibility of outsiders: the role of migrant labour in the meat-processing industry

This article examines the role of migrant workers in meat-processing factories in the UK. Drawing on materials from mixed methods research in a number of case study towns across Wales, we explore the structural and spatial processes that position migrant workers as outsiders. While state policy and immigration controls are often presented as a way of protecting migrant workers from work-based exploitation and ensuring jobs for British workers, our research highlights that the situation ‘on the ground’ is more complex. We argue that ‘self-exploitation’ among the migrant workforce is linked to the strategies of employers and the organisation of work, and that hyper-flexible work patterns have reinforced the spatial and social invisibilities of migrant workers in this sector. While this creates problems for migrant workers, we conclude that it is beneficial to supermarkets looking to supply consumers with the regular supply of cheap food to which they have become accustomed

Unsigned magnetic flux as a proxy for radial-velocity variations in Sun-like stars

We estimate disc-averaged RV variations of the Sun over the last magnetic cycle, from the single Fe I line observed by SDO/HMI, using a physical model for rotationally modulated magnetic activity that was previously validated against HARPS-N solar observations. We estimate the disc-averaged, unsigned magnetic flux and show that a simple linear fit to it reduces the RMS of RV variations by 62%, i.e. a factor of 2.6. We additionally apply the FF' method, which predicts RV variations based on a star's photometric variations. At cycle maximum, we find that additional physical processes must be at play beyond suppression of convective blueshift and velocity imablances resulting from brightness inhomogeneities, in agreement with recent studies of solar RV variations. By modelling RV variations over the magnetic cycle using a linear fit to the unsigned magnetic flux, we recover injected planets at an orbital period of about 300 days with RV semi-amplitudes down to 0.3 m/s. To reach semi-amplitudes of 0.1 m/s, we will need to identify and model additional physical phenomena that are not well traced by the unsigned magnetic flux or FF'. The unsigned magnetic flux is an excellent proxy for rotationally modulated, activity-induced RV variations, and could become a key tool in confirming and characterising Earth analogs orbiting Sun-like stars. The present study motivates ongoing and future efforts to develop observation and analysis techniques to measure the unsigned magnetic flux at high precision in slowly rotating, relatively inactive stars like the Sun.Comment: 25 pages, 11 figures, 3 tables, submitted to Ap

'Reaching the hard to reach' - lessons learned from the VCS (voluntary and community Sector). A qualitative study.

Background The notion 'hard to reach' is a contested and ambiguous term that is commonly used within the spheres of social care and health, especially in discourse around health and social inequalities. There is a need to address health inequalities and to engage in services the marginalized and socially excluded sectors of society. Methods This paper describes a pilot study involving interviews with representatives from eight Voluntary and Community Sector (VCS) organisations . The purpose of the study was to explore the notion of 'hard to reach' and perceptions of the barriers and facilitators to accessing services for 'hard to reach' groups from a voluntary and community sector perspective. Results The 'hard to reach' may include drug users, people living with HIV, people from sexual minority communities, asylum seekers, refugees, people from black and ethnic minority communities, and homeless people although defining the notion of the 'hard to reach' is not straight forward. It may be that certain groups resist engaging in treatment services and are deemed hard to reach by a particular service or from a societal stance. There are a number of potential barriers for people who may try and access services, including people having bad experiences in the past; location and opening times of services and how services are funded and managed. A number of areas of commonality are found in terms of how access to services for 'hard to reach' individuals and groups could be improved including: respectful treatment of service users, establishing trust with service users, offering service flexibility, partnership working with other organisations and harnessing service user involvement. Conclusions: If health services are to engage with groups that are deemed 'hard to reach' and marginalised from mainstream health services, the experiences and practices for engagement from within the VCS may serve as useful lessons for service improvement for statutory health services

Social marketing applied to HIV/AIDS prevention: the case of a five-year governmental response in Portugal

HIV infection has been a concerning health issue prioritised by health governmental institutions that has required the development of public health policies with an integrated social marketing intervention in an upstream dimension. A behaviour change strategy should invest in segmented communication for priority targets, in partnership with multiple stakeholders. This case explores and discusses the integrated social marketing programme developed by the Portuguese Ministry of Health to prevent HIV/AIDS in the period 2006–2011 and its long-term evaluation in behaviour change, comparing data from 2005 and 2017. This case shows the initial diagnosis; the social marketing strategy developed for different targets in partnership with civil society organisations, following a variety of theoretical frameworks; and effectiveness evaluation in epidemic outcomes. A guide is provided with questions for discussion.FCT - Fundação para a Ciência e a Tecnologia(UID/SOC/04521/2013

Alternative optical concept for electron cyclotron emission imaging

The implementation of advanced electron cyclotron emission imaging (ECEI) systems on tokamak experiments has revolutionized the diagnosis of magnetohydrodynamic (MHD) activities and improved our understanding of instabilities, which lead to disruptions. It is therefore desirable to have an ECEI system on the ITER tokamak. However, the large size of optical components in presently used ECEI systems have, up to now, precluded the implementation of an ECEI system on ITER. This paper describes a new optical ECEI concept that employs a single spherical mirror as the only optical component and exploits the astigmatism of such a mirror to produce an image with one-dimensional spatial resolution on the detector. Since this alternative approach would only require a thin slit as the viewing port to the plasma, it would make the implementation of an ECEI system on ITER feasible. The results obtained from proof-of-principle experiments with a 125 GHz microwave system are presented.open0

An ultra-short period rocky super-Earth orbiting the G2-star HD 80653

Ultra-short period (USP) planets are a class of exoplanets with periods shorter than one day. The origin of this sub-population of planets is still unclear, with different formation scenarios highly dependent on the composition of the USP planets. A better understanding of this class of exoplanets will, therefore, require an increase in the sample of such planets that have accurate and precise masses and radii, which also includes estimates of the level of irradiation and information about possible companions. Here we report a detailed characterization of a USP planet around the solar-type star HD 80653 $\equiv$ EP 251279430 using the K2 light curve and 108 precise radial velocities obtained with the HARPS-N spectrograph, installed on the Telescopio Nazionale Galileo. From the K2 C16 data, we found one super-Earth planet ($R_{b}=1.613\pm0.071 R_{\oplus}$) transiting the star on a short-period orbit ($P_{\rm b}=0.719573\pm0.000021$ d). From our radial velocity measurements, we constrained the mass of HD 80653 b to $M_{b}=5.60\pm0.43 M_{\oplus}$. We also detected a clear long-term trend in the radial velocity data. We derived the fundamental stellar parameters and determined a radius of $R_{\star}=1.22\pm0.01 R_{\odot}$ and mass of $M_{\star}=1.18\pm0.04 M_{\odot}$, suggesting that HD 80653, has an age of $2.7\pm1.2$ Gyr. The bulk density ($\rho_{b} = 7.4 \pm 1.1$ g cm$^{-3}$) of the planet is consistent with an Earth-like composition of rock and iron with no thick atmosphere. Our analysis of the K2 photometry also suggests hints of a shallow secondary eclipse with a depth of 8.1$\pm$3.7 ppm. Flux variations along the orbital phase are consistent with zero. The most important contribution might come from the day-side thermal emission from the surface of the planet at $T\sim3480$ K.Includes STFC

Temporal evolution and correlations of optical activity indicators measured in Sun-as-a-star observations

A.C.C. acknowledges support from the Science and Technology Facilities Council (STFC) consolidated grant number ST/R000824/1.Context. Understanding stellar activity in solar-type stars is crucial for the physics of stellar atmospheres as well as for ongoing exoplanet programmes. Aims. We aim to test how well we understand stellar activity using our own star, the Sun, as a test case. Methods. We performed a detailed study of the main optical activity indicators (Ca II H & K, Balmer lines, Na I D1 D2, and He I D3) measured for the Sun using the data provided by the HARPS-N solar-telescope feed at the Telescopio Nazionale Galileo. We made use of periodogram analyses to study solar rotation, and we used the pool variance technique to study the temporal evolution of active regions. The correlations between the different activity indicators as well as the correlations between activity indexes and the derived parameters from the cross-correlation technique are analysed. We also study the temporal evolution of these correlations and their possible relationship with indicators of inhomogeneities in the solar photosphere like sunspot number or radio flux values. Results. The value of the solar rotation period is found in all the activity indicators, with the only exception being Hδ. The derived values vary from 26.29 days (Hγ line) to 31.23 days (He I). From an analysis of sliding periodograms we find that in most of the activity indicators the spectral power is split into several “bands” of periods around 26 and 30 days. They might be explained by the migration of active regions between the equator and a latitude of ∼30°, spot evolution, or a combination of both effects. A typical lifetime of active regions of approximately ten rotation periods is inferred from the pooled variance diagrams, which is in agreement with previous works. We find that Hα, Hβ, Hγ, Hϵ, and He I show a significant correlation with the S index. Significant correlations between the contrast, bisector span, and the heliocentric radial velocity with the activity indexes are also found. We show that the full width at half maximum, the bisector, and the disc-integrated magnetic field correlate with the radial velocity variations. The correlation of the S index and Hα changes with time, increasing with larger sun spot numbers and solar irradiance. A similar tendency with the S index and radial velocity correlation is also present in the data. Conclusions. Our results are consistent with a scenario in which higher activity favours the correlation between the S index and the Hα activity indicators and between the S index and radial velocity variations.PostprintPeer reviewe