Replication of viruses responsible for Sweet potato virus disease in resistant and susceptible sweepotato genotypes and identification of molecular markers linked to resistance

Virus diseases are a major constraint to sweetpotato production in East Africa. The most important is the Sweet potato virus disease (SPVD), a result of co-infection of Sweet potato chlorotic stunt virus (SPCSV) and Sweet potato feathery mottle virus (SPFMV). Studies were done on different aspects of resistance to SPVD, and to determine the presence of Sweet potato virus G (SPVG), Sweet potato virus 2 (SPV2), and Sweet potato leaf curl virus (SPLCV), viruses that have not been reported infecting sweetpotato in Kenya. None of the samples reacted to antisera for either SPVG or SPV-2. SPLCV was detected infecting sweetpotato in Kenya for the first time. Some sweetpotato genotypes have irregular distribution or low virus titers, or recover from SPVD. The possibility of using this resistance to obtain virus free cuttings from field-grown sweetpotato vines for propagation was studied. Vines were cut into three pieces (15 cm, 15-30 cm, and \u3e30 cm from the apex) and tested for SPCSV, SPFMV and Sweet potato mild mottle virus (SPMMV), the most common viruses in Kenyan fields. The viruses were equally present in all sections of infected vines and no section was any more likely to be virus free. Accumulation patterns of SPCSV and SPFMV in mixed infections were compared in SPVD-susceptible cultivars, ‘Beauregard’ and ‘Namaswakhe’, and resistant cultivars, ‘Naspot I’ and ‘Mar Ooko’. Virus titers were estimated using real-time quantitative PCR. Resistance in ‘Naspot I’ and ‘Mar Ooko’ was associated with reduced SPCSV and SPFMV multiplication, respectively. Titers of both viruses increase to certain thresholds after which symptoms appear, indicating that both viruses are important in SPVD development. To determine if SPVD resistant genotypes could be identified using molecular markers, sweetpotato genotypes were selected and classified as resistant or susceptible and amplified fragment length polymorphism (AFLP) marker profiles used in association studies. Analysis of molecular variance found significant (P\u3c0.002) differences between the two groups. Discriminant and logistic regression analysis were used to select informative markers, and to develop models to classify the two groups. Four markers, which gave 94% correct classification of a test population, were selected by both statistical methods

Effect of Sequence of Infection of Maize with Viruses Causing Maize Lethal Necrosis on Disease Development

Maize is the main staple food crop in Kenya. However, its production is constrained by maize lethal necrosis (MLN) disease, a result of dual infection of maize plants with Maize chlorotic mottle virus (MCMV) and a potyvirus Sugarcane mosaic virus (SCMV). In the field, infection by the two viruses is independent rather than occurring simultaneously since MCMV and SCMV are transmitted by different vectors. This study aimed at evaluating the effect of sequence of infection of maize by the two viruses causing MLN disease in the greenhouse. Two susceptible maize hybrids (DUMA 43 and H614D) were each infected with either of the two viruses first and later inoculated with the second virus. The plants were assessed for disease development weekly over a period of 2 months. Symptoms were significantly (p=0.05) more severe in maize plants initially infected with MCMV followed by SCMV, resulting in rapid death of plants compared to plants infected with SCMV followed by MCMV. The results indicate that severity of symptoms is influenced by the sequence of infection of maize plants with the causal agents of MLN disease. More remarkable was the synergism observed in maize plants pre-inoculated with SCMV followed by MCMV that had a slow manifestation of MLN disease symptoms. The results suggest that initial infection by SCMV may result in maize plants developing some levels of resistance resulting in initial suppression of MCMV infection. This study contributes to the understanding of resistance mechanisms exhibited by the plants during MLN disease development. Keywords: Maize, MCMV, SCMV, Synergism, Sequence of infection DOI: 10.7176/JNSR/9-8-06 Publication date: April 30th 201

Identification and analysis of cassava genotype TME3 bacteria artificial chromosome libraries for characterization of the cassava mosaic disease

Cassava is an economically important crop in sub-Saharan Africa; however, its yield potential is constrained by cassava mosaic disease (CMD) infection. Classical genetics and biotechnology are being harnessed to overcome the disease and secure yields for farmers. The CMD2 resistance locus flanked by three simple sequence repeats (SSR) markers and one sequence characterized amplified region (SCAR) marker were mapped in West African genotypes and shown to impart qualitative resistant to all species of CMGs. However, gene(s) associated with the CMD2 locus and their mode of actions remains unknown. In an effort to discover gene(s) located in CMD2 locus region, TME3 BAC collections were screened for the presence of CMD2 flanking markers. CMD susceptible and resistant cassava genotypes were found to contain 100% of the markers flanking CMD2 locus. SNPs and nucleotide deletions were identified within the marker sequences but there was no evidence of trait and marker association. All the SSR markers flanking CMD2, and the more recently characterized CMD3 loci were to be located on chromosome 12. Through BAC pools library hybridization with marker probes, 130 BACs were identified, but only 23 BACs contained at least CMD2 specific two markers. Whole BAC sequencing identified five clones that mapped to the marker regions. BAC29 assembled into a 100 kb contig and encoded tandem repeats of three full length R genes (3.5 kb) and two partial repeats. These R genes were conserved and highly expressed in CMD susceptible and CMD resistant cassava genotypes. Promoter sequences derived from R genes showed similar transient expression of GUS as 35S promoter. On cassava genome V6.1 BAC29 sequences were mapped to chromosome 16, eliminating their potential role in CMD resistant.Keywords: Bacteria artificial chromosome, CMD2, cassava, cassava mosaic diseas

Distribution of Cassava Bacterial Blight and Reaction of Selected Cassava Genotypes to the Disease in Kenya

Cassava bacterial blight (CBB) disease is an important bacterial disease of cassava. A study was carried out to determine the distribution of CBB in Kenya and to evaluate selected cassava genotypes for reaction to the disease. A survey was conducted in all the cassava growing regions within the country where cassava leaves showing symptoms of CBB were collected and isolated for biochemical characterization and PCR detection of the causal agent. The isolates were then used to determine the reaction of seven cassava genotypes to the disease. The disease was present in 17 out of the 21 counties surveyed. The bacteria extracted from the leaf samples conformed to all the biochemical and physiological tests specific to Xanthomonas axonopodis pv manihotis and to xanthomonads in general.  Polymerase chain reaction amplified the expected 500 base pairs fragment. Disease prevalence was highest in Kwale County at 100% Kilifi County recorded the highest incidence at 64%. All the genotypes evaluated in the greenhouse had area under disease progress curve (AUDPC) values higher than 52 which grouped them as susceptible. The study confirms the wide distribution of CBB in Kenya and the presence of the disease in the coast region, which was previously considered CBB free. The study also shows that some of the cassava genotypes being targeted for improvement by other projects are susceptible to the disease, and therefore the need consider resistance to CBB in developing improved cassava genotypes. Keywords: Cassava bacterial blight, Distribution, Resistance DOI: 10.7176/JNSR/9-4-0

Introduction and scientific justification of data transportability for confined field testing for the ERA of GM plants

The concept of Data Transportability (DT) of Confined Field Testing (CFT) to support the Environmental Risk Assessment (ERA) of Genetically Modified (GM) plants was first introduced in the literature by Garcia-Alonso et al., in 2014. Since then, DT has been discussed in many countries and regions as a concept to prevent duplication of regulatory studies without compromising quality of the ERA. However, despite its usefulness and scientific justification, DT is not well adopted at this time and many regulatory agencies around the world require additional in-country CFT be conducted before approving GM plants. Based on the current circumstances, the authors organized a parallel session entitled “Introduction and Scientific Justification of DT for CFT for the ERA of GM plants” at 16th ISBR (the International Society for Biosafety Research). This session mainly consisted of the following three parts. The first two speakers, Andrew Roberts and Abigail Simmons provided an overview of DT and examples of conditions for the transportability of field data/conclusions advocated in the peer-reviewed scientific journals. Next, the current status of DT adoption in some countries/regions such as Japan and Africa, and a theoretical case study for Argentina were introduced by Kazuyuki Hiratsuka, Douglas Miano, and Facundo Vesprini, respectively. Lastly, a risk hypothesis-based approach for DT which was developed in advance by the five speakers of this parallel session, was introduced. During the discussion, there was a common understanding that transition to the risk hypothesis-based approach for DT was scientifically appropriate, considering the accumulated evidences that several countries have conducted confirmatory local CFT for more than 20 years but they have not detected any differences related to the ERA assessment endpoints in GM crops. The risk hypothesis-based approach for DT introduced here is expected to play an important role in discussions on the implementation of DT in various parts of the world in the future

Biocontrol-based strategies for improving soil health and managing plant-parasitic nematodes in coffee production

Coffee is an important commodity for Kenya, where production is steadily declining, despite a global rise in demand. Of the various constraints affecting production, plant-parasitic nematodes are a significant, but often overlooked, threat. As a perennial crop, treating plantations once infected with nematodes becomes difficult. The current study evaluated the drenching application of two biocontrol agents, Trichoderma asperellum and Purpureocillium lilacinum, for their nematode control efficacy, as well as their impact on the soil nematode community structure on mature, established coffee trees in Kenya. Seven Arabica coffee field trials were conducted over two years on trees of various ages. All the fields were heavily infested with Meloidogyne hapla, the first report of the species on coffee in Kenya. Both fungal biocontrol agents were detected endophytically infecting roots and recovered from soil but not until six months after initial applications. The population densities of M. hapla had significantly declined in roots of treated trees 12 months after the initial application, although soil nematode density data were similar across treatments. Based upon the maturity index and the Shannon index, treatment with T. asperellum led to improved soil health conditions and enrichment of diversity in the microbial community. Application of P. lilacinum, in particular, led to an increased abundance of fungivorous nematodes, especially Aphelenchus spp., for which P. lilacinum would appear to be a preferred food source. The soils in the trials were all stressed and denuded, however, which likely delayed the impact of such treatments or detection of any differences between treatments using indices, such as the functional metabolic footprint, over the period of study. A longer period of study would therefore likely provide a better indication of treatment benefits. The current study positively demonstrates, however, the potential for using biologically based options for the environmentally and climate-smart management of nematode threats in a sustainable manner on established, mature coffee plantations

Multilateral benefit-sharing from digital sequence information will support both science and biodiversity conservation

Open access to sequence data is a cornerstone of biology and biodiversity research, but has created tension under the United Nations Convention on Biological Diversity (CBD). Policy decisions could compromise research and development, unless a practical multilateral solution is implemented.This workwas funded by the German Federal Ministry of Education and Research (BMBF) WiLDSI 031B0862 (A.H.S., J.O., and J.F.) and Horizon Europe EVA-GLOBAL 871029 (A.H.S.). I.K.M. was supported by the National Center for Biotechnology Information of the National Library of Medicine, National Institutes of Health

Policy options for food system transformation in Africa and the role of science, technology and innovation

As recognized by the Science, Technology and Innovation Strategy for Africa – 2024 (STISA-2024), science, technology and innovation (STI) offer many opportunities for addressing the main constraints to embracing transformation in Africa, while important lessons can be learned from successful interventions, including policy and institutional innovations, from those African countries that have already made significant progress towards food system transformation. This chapter identifies opportunities for African countries and the region to take proactive steps to harness the potential of the food and agriculture sector so as to ensure future food and nutrition security by applying STI solutions and by drawing on transformational policy and institutional innovations across the continent. Potential game-changing solutions and innovations for food system transformation serving people and ecology apply to (a) raising production efficiency and restoring and sustainably managing degraded resources; (b) finding innovation in the storage, processing and packaging of foods; (c) improving human nutrition and health; (d) addressing equity and vulnerability at the community and ecosystem levels; and (e) establishing preparedness and accountability systems. To be effective in these areas will require institutional coordination; clear, food safety and health-conscious regulatory environments; greater and timely access to information; and transparent monitoring and accountability systems

Policy options for food system transformation in Africa and the role of science, technology and innovation

As recognized by the Science, Technology and Innovation Strategy for Africa – 2024 (STISA-2024), science, technology and innovation (STI) offer many opportunities for addressing the main constraints to embracing transformation in Africa, while important lessons can be learned from successful interventions, including policy and institutional innovations, from those African countries that have already made significant progress towards food system transformation. This chapter identifies opportunities for African countries and the region to take proactive steps to harness the potential of the food and agriculture sector so as to ensure future food and nutrition security by applying STI solutions and by drawing on transformational policy and institutional innovations across the continent. Potential game-changing solutions and innovations for food system transformation serving people and ecology apply to (a) raising production efficiency and restoring and sustainably managing degraded resources; (b) finding innovation in the storage, processing and packaging of foods; (c) improving human nutrition and health; (d) addressing equity and vulnerability at the community and ecosystem levels; and (e) establishing preparedness and accountability systems. To be effective in these areas will require institutional coordination; clear, food safety and health-conscious regulatory environments; greater and timely access to information; and transparent monitoring and accountability systems.https://link.springer.com/book/10.1007/978-3-031-15703-5hj2024Agricultural Economics, Extension and Rural DevelopmentSDG-02:Zero Hunge

Prioritization of invasive alien species with the potential to threaten agriculture and biodiversity in Kenya through horizon scanning

Invasive alien species (IAS) rank among the most significant drivers of species extinction and ecosystem degradation resulting in significant impacts on socio-economic development. The recent exponential spread of IAS in most of Africa is attributed to poor border biosecurity due to porous borders that have failed to prevent initial introductions. In addition, countries lack adequate information about potential invasions and have limited capacity to reduce the risk of invasions. Horizon scanning is an approach that prioritises the risks of potential IAS through rapid assessments. A group of 28 subject matter experts used an adapted methodology to assess 1700 potential IAS on a 5-point scale for the likelihood of entry and establishment, potential socio-economic impact, and impact on biodiversity. The individual scores were combined to rank the species according to their overall potential risk for the country. Confidence in individual and overall scores was recorded on a 3-point scale. This resulted in a priority list of 120 potential IAS (70 arthropods, 9 nematodes, 15 bacteria, 19 fungi/chromist, 1 viroid, and 6 viruses). Options for risk mitigation such as full pest risk analysis and detection surveys were suggested for prioritised species while species for which no immediate action was suggested, were added to the plant health risk register and a recommendation was made to regularly monitor the change in risk. By prioritising risks, horizon scanning guides resource allocation to interventions that are most likely to reduce risk and is very useful to National Plant Protection Organisations and other relevant stakeholders