The Infrared Imaging Spectrograph (IRIS) for TMT: Volume phase holographic grating performance testing and discussion

Maximizing the grating efficiency is a key goal for the first light instrument IRIS (Infrared Imaging Spectrograph) currently being designed to sample the diffraction limit of the TMT (Thirty Meter Telescope). Volume Phase Holographic (VPH) gratings have been shown to offer extremely high efficiencies that approach 100% for high line frequencies (i.e., 600 to 6000l/mm), which has been applicable for astronomical optical spectrographs. However, VPH gratings have been less exploited in the near-infrared, particularly for gratings that have lower line frequencies. Given their potential to offer high throughputs and low scattered light, VPH gratings are being explored for IRIS as a potential dispersing element in the spectrograph. Our team has procured near-infrared gratings from two separate vendors. We have two gratings with the specifications needed for IRIS current design: 1.51-1.82{\mu}m (H-band) to produce a spectral resolution of 4000 and 1.19- 1.37 {\mu}m (J-band) to produce a spectral resolution of 8000. The center wavelengths for each grating are 1.629{\mu}m and 1.27{\mu}m, and the groove densities are 177l/mm and 440l/mm for H-band R=4000 and J-band R=8000, respectively. We directly measure the efficiencies in the lab and find that the peak efficiencies of these two types of gratings are quite good with a peak efficiency of ~88% at the Bragg angle in both TM and TE modes at H-band, and 90.23% in TM mode, 79.91% in TE mode at J-band for the best vendor. We determine the drop in efficiency off the Bragg angle, with a 20-23% decrease in efficiency at H-band when 2.5 degree deviation from the Bragg angle, and 25%-28% decrease at J-band when 5{\deg} deviation from the Bragg angle.Comment: Proceedings of the SPIE, 9147-33

The InfraRed Imaging Spectrograph (IRIS) for TMT: Reflective ruled diffraction grating performance testing and discussion

We present the efficiency of near-infrared reflective ruled diffraction gratings designed for the InfraRed Imaging Spectrograph (IRIS). IRIS is a first light, integral field spectrograph and imager for the Thirty Meter Telescope (TMT) and narrow field infrared adaptive optics system (NFIRAOS). We present our experimental setup and analysis of the efficiency of selected reflective diffraction gratings. These measurements are used as a comparison sample against selected candidate Volume Phase Holographic (VPH) gratings (see Chen et al., this conference). We investigate the efficiencies of five ruled gratings designed for IRIS from two separate vendors. Three of the gratings accept a bandpass of 1.19-1.37 {\mu}m (J band) with ideal spectral resolutions of R=4000 and R=8000, groove densities of 249 and 516 lines/mm, and blaze angles of 9.86 and 20.54 degrees, respectively. The other two gratings accept a bandpass of 1.51-1.82 {\mu}m (H Band) with an ideal spectral resolution of R=4000, groove density of 141 lines/mm, and blaze angle of 9.86{\deg}. We measure the efficiencies off blaze angle for all gratings and the efficiencies between the polarization transverse magnetic (TM) and transverse electric (TE) states. The peak reflective efficiencies are 98.90 +/- 3.36% (TM) and 84.99 +/- 2.74% (TM) for the H-band R=4000 and J-band R=4000 respectively. The peak reflective efficiency for the J-band R=8000 grating is 78.78 +/- 2.54% (TE). We find that these ruled gratings do not exhibit a wide dependency on incident angle within +/-3{\deg}. Our best-manufactured gratings were found to exhibit a dependency on the polarization state of the incident beam with a ~10-20% deviation, consistent with the theoretical efficiency predictions.Comment: Proceedings of the SPIE, 9147-34

Monitoring of dabigatran anticoagulation and its reversal in vitro by thrombelastography.

Dabigatran etexilate, a pro-drug of a direct thrombin inhibitor, was approved a few years ago for non-valvular atrial fibrillation and deep venous thrombosis. Rapid monitoring of the dabigatran level is essential in trauma and bleeding patients but the traditional plasma-based assays may not sufficiently display the effect. Furthermore, no antidote exists and reversal of the anticoagulant effect is impossible or difficult. The present study investigated the in vitro effect of dabigatran on whole blood thromboelastography (TEG) and its reversal by recombinant activated factor VII and prothrombin complex concentrate

NLRP2 controls age-associated maternal fertility

Nucleotide-binding domain and leucine-rich repeat (NLR) proteins are well-known for their key roles in the immune system. Ectopically expressed NLRP2 in immortalized cell lines assembles an inflammasome and inhibits activation of the proinflammatory transcription factor NF-kappa B, but the physiological roles of NLRP2 are unknown. Here, we show that Nlrp2-deficient mice were born with expected Mendelian ratios and that Nlrp2 was dispensable for innate and adaptive immunity. The observation that Nlrp2 was exclusively expressed in oocytes led us to explore the role of Nlrp2 in parthenogenetic activation of oocytes. Remarkably, unlike oocytes of young adult Nlrp2-deficient mice, activated oocytes of mature adult mice developed slower and largely failed to reach the blastocyst stage. In agreement, we noted strikingly declining reproductive rates in vivo with progressing age of female Nlrp2-deficient mice. This work identifies Nlrp2 as a critical regulator of oocyte quality and suggests that NLRP2 variants with reduced activity may contribute to maternal age-associated fertility loss in humans

The Infrared Imaging Spectrograph (IRIS) for TMT: Volume Phase Holographic Grating Performance Testing and Discussion

Maximizing the grating efficiency is a key goal for the first light instrument IRIS (Infrared Imaging Spectrograph) currently being designed to sample the diffraction limit of the TMT (Thirty Meter Telescope). Volume Phase Holographic (VPH) gratings have been shown to offer extremely high efficiencies that approach 100% for high line frequencies (i.e., 600 to 6000l/mm), which has been applicable for astronomical optical spectrographs. However, VPH gratings have been less exploited in the near-infrared, particularly for gratings that have lower line frequencies. Given their potential to offer high throughputs and low scattered light, VPH gratings are being explored for IRIS as a potential dispersing element in the spectrograph. Our team has procured near-infrared gratings from two separate vendors. We have two gratings with the specifications needed for IRIS current design: 1.51-1.82μm (H-band) to produce a spectral resolution of 4000 and 1.19-1.37μm (J-band) to produce a spectral resolution of 8000. The center wavelengths for each grating are 1.629μm and 1.27μm, and the groove densities are 177l/mm and 440l/mm for H-band R=4000 and J-band R=8000, respectively. We directly measure the efficiencies in the lab and find that the peak efficiencies of these two types of gratings are quite good with a peak efficiency of ∼88% at the Bragg angle in both TM and TE modes at H-band, and 90.23% in TM mode, 79.91% in TE mode at J-band for the best vendor. We determine the drop in efficiency off the Bragg angle, with a 20-23% decrease in efficiency at H-band when 2.5° deviation from the Bragg angle, and 25%-28% decrease at J-band when 5° deviation from the Bragg angle

Principal component and factor analytic models in international sire evaluation

<p>Abstract</p> <p>Background</p> <p>Interbull is a non-profit organization that provides internationally comparable breeding values for globalized dairy cattle breeding programmes. Due to different trait definitions and models for genetic evaluation between countries, each biological trait is treated as a different trait in each of the participating countries. This yields a genetic covariance matrix of dimension equal to the number of countries which typically involves high genetic correlations between countries. This gives rise to several problems such as over-parameterized models and increased sampling variances, if genetic (co)variance matrices are considered to be unstructured.</p> <p>Methods</p> <p>Principal component (PC) and factor analytic (FA) models allow highly parsimonious representations of the (co)variance matrix compared to the standard multi-trait model and have, therefore, attracted considerable interest for their potential to ease the burden of the estimation process for multiple-trait across country evaluation (MACE). This study evaluated the utility of PC and FA models to estimate variance components and to predict breeding values for MACE for protein yield. This was tested using a dataset comprising Holstein bull evaluations obtained in 2007 from 25 countries.</p> <p>Results</p> <p>In total, 19 principal components or nine factors were needed to explain the genetic variation in the test dataset. Estimates of the genetic parameters under the optimal fit were almost identical for the two approaches. Furthermore, the results were in a good agreement with those obtained from the full rank model and with those provided by Interbull. The estimation time was shortest for models fitting the optimal number of parameters and prolonged when under- or over-parameterized models were applied. Correlations between estimated breeding values (EBV) from the PC19 and PC25 were unity. With few exceptions, correlations between EBV obtained using FA and PC approaches under the optimal fit were ≥ 0.99. For both approaches, EBV correlations decreased when the optimal model and models fitting too few parameters were compared.</p> <p>Conclusions</p> <p>Genetic parameters from the PC and FA approaches were very similar when the optimal number of principal components or factors was fitted. Over-fitting increased estimation time and standard errors of the estimates but did not affect the estimates of genetic correlations or the predictions of breeding values, whereas fitting too few parameters affected bull rankings in different countries.</p

Quantification of Hair Cortisol Concentration in Common Marmosets (\u3cem\u3eCallithrix jacchus\u3c/em\u3e) and Tufted Capuchins (\u3cem\u3eCebus apella\u3c/em\u3e)

Quantifying cortisol concentration in hair is a non-invasive biomarker of long-term hypothalamic-pituitary-adrenal (HPA) activation, and thus can provide important information on laboratory animal health. Marmosets (Callithrix jacchus) and capuchins (Cebus apella) are New World primates increasingly used in biomedical and neuroscience research, yet published hair cortisol concentrations for these species are limited. Review of the existing published hair cortisol values from marmosets reveals highly discrepant values and the use of variable techniques for hair collection, processing, and cortisol extraction. In this investigation we utilized a well-established, standardized protocol to extract and quantify cortisol from marmoset (n = 12) and capuchin (n = 4) hair. Shaved hair samples were collected from the upper thigh during scheduled exams and analyzed via methanol extraction and enzyme immunoassay. In marmosets, hair cortisol concentration ranged from 2710 – 6267 pg/mg and averaged 4070 ± 304 pg/mg. In capuchins, hair cortisol concentration ranged from 621 – 2089 pg/mg and averaged 1092 ± 338 pg/mg. Hair cortisol concentration was significantly different between marmosets and capuchins, with marmosets having higher concentrations than capuchins. The incorporation of hair cortisol analysis into research protocols provides a non-invasive measure of HPA axis activity over time, which offers insight into animal health. Utilization of standard protocols across laboratories is essential to obtaining valid measurements and allowing for valuable future cross-species comparisons

A novel environmental enrichment device improved broiler performance without sacrificing bird physiological or environmental quality measures

Modern commercial broilers have been genetically selected for fast growth and heavy breast muscling, contributing to a top-heavy phenotype and increased leg lameness. A quick-growing phenotype coupled with poor leg health fosters inactivity. The objective of this study was to stimulate broiler movement using novel environmental enrichment and determine the impact of movement on production, leg health, and environmental parameters. A total of 1,200 Ross 308 broilers were housed in 40 pens with 30 birds/pen for 6 wk in 2 separate rooms (laser enrichment or control). Each enrichment device was mounted above 2 adjoining pens, projected 2 independent, randomly moving laser beams at the floor to stimulate innate predatory behavior, and was active 4 times daily in 4-min periods. Performance outcomes were calculated by pen and averaged per bird for each performance period and overall days 0 to 42. A total of 70 randomly selected focal birds were examined for breast blisters and footpad dermatitis each week and euthanized on day 42 for tibia quality measures. Air quality and litter moisture were sampled by week. Laser-enriched pens had greater average bird feed intake in starter (P \u3c 0.001), grower (P = 0.004), finisher periods (P = 0.004), and overall days 0 to 42 (0.19 kg/bird; P = 0.0003). Average bird weight gain was also increased in enriched pens in each performance period: starter (P = 0.043), grower (P = 0.001), finisher (P \u3c 0.001), and overall days 0 to 42 (0.24 kg/bird; P \u3c 0.001). Enriched pens had improved feed conversion ratio (FCR) vs. control with a decrease of 3 FCR points in the grower (P = 0.031), 18 points in the finisher (P \u3c 0.001), and 7 points overall (P \u3c 0.001). Enriched pens had higher ADG during starter (P = 0.048), finisher (P \u3c 0.001), and overall (5.7 g/bird/d; P \u3c 0.001). No differences were found in breast blister, footpad dermatitis, tibia, air, or litter quality measures (P \u3e 0.05). In summary, a novel enrichment device based on bird visual feeding and predatory instincts positively affected performance through decreased FCR and increased ADG without sacrificing external animal-based measures, tibia quality, or air or litter quality

Muscle glycogen remodeling and glycogen phosphate metabolism following exhaustive exercise of wild type and laforin knockout mice

Glycogen, the repository of glucose in many cell types, contains small amounts of covalent phosphate, of uncertain function and poorly understood metabolism. Loss-of-function mutations in the laforin gene cause the fatal neurodegenerative disorder, Lafora disease, characterized by increased glycogen phosphorylation and the formation of abnormal deposits of glycogen-like material called Lafora bodies. It is generally accepted that the phosphate is removed by the laforin phosphatase. To study the dynamics of skeletal muscle glycogen phosphorylation in vivo under physiological conditions, mice were subjected to glycogen-depleting exercise and then monitored while they resynthesized glycogen. Depletion of glycogen by exercise was associated with a substantial reduction in total glycogen phosphate and the newly resynthesized glycogen was less branched and less phosphorylated. Branching returned to normal on a time frame of days, whereas phosphorylation remained suppressed over a longer period of time. We observed no change in markers of autophagy. Exercise of 3-month-old laforin knock-out mice caused a similar depletion of glycogen but no loss of glycogen phosphate. Furthermore, remodeling of glycogen to restore the basal branching pattern was delayed in the knock-out animals. From these results, we infer that 1) laforin is responsible for glycogen dephosphorylation during exercise and acts during the cytosolic degradation of glycogen, 2) excess glycogen phosphorylation in the absence of laforin delays the normal remodeling of the branching structure, and 3) the accumulation of glycogen phosphate is a relatively slow process involving multiple cycles of glycogen synthesis-degradation, consistent with the slow onset of the symptoms of Lafora disease