3D mesh refinement procedure using the bisection and rivara algorithms with mesh quality assessment

Mesh refinement procedures for the solution of three dimensional problems are described. The computational\ud domain is represented by an assembly of tetrahedral elements and the mesh refinement is acheived by the bisection\ud and Rivara methods using an explicit mesh density function coupled with an automatic 3D mesh generator.\ud A couple of benchmark examples is used to compare the performance of both refinement methods in terms of mesh\ud and size qualities, number of generated elements and CPU time consume

Taxonomy and chemical characterization of new antibiotics produced by Saccharothrix SA198 isolated from a Saharan soil

Actinomycete strain SA198, isolated from a Saharan soil sample of Algeria, exhibited antimicrobial activity against Gram-positive and Gram-negative bacteria, and phytopathogenic and toxinogenic fungi. The morphological and chemotaxonomic characteristics of the strain were consistent with those of the genus Saccharothrix. Analysis of the 16S rRNA gene sequence of strain SA198 showed a similarity level ranging between 97.2 and 98.8% within Saccharothrix species, S. australiensis being the most closely related. Two new active products were isolated by reverse HPLC using a C18 column. The ultraviolet–visible (UV–VIS), infrared (IR), mass, and 1Hand 14C nuclear magnetic resonance (NMR) spectra showed that these products were new bioactive compounds. The minimum inhibitory concentrations of these antibiotics showed a strong activity against fungi and moderate activities against Gram-positive and Gram-negative bacteria

Ovulation rate and early embryonic survival rate in female rabbits of a synthetic line and a local Algerian population

[EN] A higher litter size at birth has been reported in female rabbits from a Synthetic line than in those of the Local Algerian population. The aim of this work was to analyse whether this difference in litter size was due to a higher ovulation rate and/or embryonic survival rate in Synthetic line than in Local Algerian population. In total, 24 multiparous female rabbits from Synthetic line and 23 from Local population were used in this experiment. Litter size at birth was recorded up to the first 3 parities. Litter size was 20% higher in Synthetic line than Local population. At their 4th gestation, the females were euthanized at 72 h post coitum. Synthetic line females had 50% more ova and embryos than those of Local population (+4.42 ova and +3.92 embryos, respectively). Synthetic line displayed a lower percentage of normal embryos and a larger number of unfertilized oocytes than Local population (–2.81% and +0.64 oocytes, respectively), but differences were not relevant. Synthetic line showed a lesser embryonic stage of development at 72 h post coitum, showing a higher percentage of early morulae (31.50 vs. 8.50%) and a lower percentage of compact morulae (51.45 vs. 78.65%) than Local population. No relevant difference was found for early embryonic survival rate between Synthetic line and Local population. In conclusion, the difference in litter size was mainly due to a higher ovulation rate in the Synthetic line, allowing more embryos to develop in this line.Belabbas, R.; García, M.; Ainbaziz, H.; Berbar, A.; Zitouni, G.; Lafri, M.; Bouzouan, M.... (2016). Ovulation rate and early embryonic survival rate in female rabbits of a synthetic line and a local Algerian population. World Rabbit Science. 24(4):275-282. doi:10.4995/wrs.2016.5301.SWORD275282244Argente, M. J., Santacreu, M. A., Climent, A., & Blasco, A. (2003). Relationships between uterine and fetal traits in rabbits selected on uterine capacity1. Journal of Animal Science, 81(5), 1265-1273. doi:10.2527/2003.8151265xBelabbas R., AinBaziz H., Ilès I., Zenia S., Boumahdi Z., Boulbina I., Temim S. 2011. Study of prolificacy and its main biological components in rabbits of local Algerian population (Oryctolagus cuniculus). Livest. Res. Rur. Dev., 23: 61.Brun J.M., Baselga M. 2004. Analysis of reproductive performances during the formation of a rabbit synthetic strain. In Proc.: 8th World Rabbit Congress, September 7-10, 2004, Puebla, Mexico, 32-37.Bolet, G., & Theau-Clément, M. (1994). Fertilisation rate and preimplantation embryonic development in two rabbit strains of different fecundity, in purebreeding and crossbreeding. Animal Reproduction Science, 36(1-2), 153-162. doi:10.1016/0378-4320(94)90062-0Buhi, W. C., & Alvarez, I. M. (2003). Identification, characterization and localization of three proteins expressed by the porcine oviduct. Theriogenology, 60(2), 225-238. doi:10.1016/s0093-691x(03)00027-xGacem M., Lebas F. 2000. Rabbit husbandry in Algeria. Technical structure and evaluation of performances. World Rabbit Sci., 8(Suppl. 1): B75-80.Gacem M., Zerrouki N., Lebas F., Bolet G., 2008. Strategy of developing rabbit meat in Algeria: creation and selection of a synthetic strain. In Proc.: 9th World Rabbit Congress, June 10-13, 2008, Verona, Italy, 85-89.Nancarrow C.D., Hill J.L. 1995. Oviduct proteins in fertilization and early embryo development. J. Reprod. Fertil., (Suppl) 49: 3-13.Salvetti P., Guérin P., Theau-Clément M., Hurtaud J., Beckers J.F., Joly T. 2007. Essais d'amélioration de la production d'embryons chez la lapine. In Proc.: 12èmes Journées de la Recherche Cunicole, 27-28 Novembre 2007, Le Mans, France, 41-44.Xie, S., Broermann, D. M., Nephew, K. P., Bishop, M. D., & Pope, W. F. (1990). Relationship between oocyte maturation and fertilization on zygotic diversity in swine. Journal of Animal Science, 68(7), 2027. doi:10.2527/1990.6872027xYoussef Y.K., Iraqi M.M., El-Raffa A.M., Afifi E.A., Khalil M.H., García M.L., Baselga M. 2008. A joint project to synthesize new lines of rabbits in Egypt and Saudi Arabia: emphasis for results and prospects. In Proc.: 9th World Rabbit Congress, June 10-13, 2008, Verona, Italy, 1637-1642

Carcinoma of an unknown primary: are EGF receptor, Her-2/neu, and c-Kit tyrosine kinases potential targets for therapy?

Carcinomas of an unknown primary site (CUP) are heterogeneous tumours with a median survival of only 8 months. Tyrosine kinase inhibitors are promising new drugs. The aim of this study was to determine the expression of EGF-receptor, Her-2/neu, and c-Kit tyrosine kinases in CUP. Paraffin-embedded specimens were obtained from 54 patients with a CUP who were included in the GEFCAPI 01 randomised phase II trial. Immunohistochemistry was performed using the Dako autostainer with antibodies directed against HER-2/neu protein, EGFR protein, and c-Kit protein (CD117). EGFR expression was found in 36 out of 54 samples (66%). In contrast, Her-2/neu overexpression and c-Kit positivity were only detected in 4 and 10% of patients, respectively. No significant association was found between the expression of the tyrosine kinase receptors and prognosis. EGFR expression was significantly associated with response to cisplatin-based chemotherapy: the response rates were 50 and 22% in patients with EGFR-positive tumours and EGFR-negative tumours, respectively (P<0.05). This study shows that EGFR is frequently expressed in CUP. This finding may prompt clinical trials investigating EGFR inhibitors in this setting. In contrast, c-Kit expression and Her-2/neu overexpression occur infrequently in CUP. EGFR expression was correlated to tumour chemosensitivity

Saccharothrix sp. PAL54, a new chloramphenicol-producing strain isolated from a Saharan soil

An actinomycete strain designated PAL54, producing an antibacterial substance, was isolated from a Saharan soil in Ghardaïa, Algeria. Morphological and chemical studies indicated that this strain belonged to the genus Saccharothrix. Analysis of the 16S rDNA sequence showed a similarity level ranging between 96.9 and 99.2% within Saccharothrix species, with S. longispora DSM 43749T, the most closely related. DNA–DNA hybridization confirmed that strain PAL54 belonged to Saccharothrix longispora. It showed very strong activity against pathogenic Gram-positive and Gram-negative bacteria responsible for nosocomial infections and resistant to multiple antibiotics. Strain PAL54 secreted the antibiotic optimally during mid-stationary and decline phases of growth. One antibacterial compound was isolated from the culture broth and purified by HPLC. The active compound was elucidated by uv-visible and NMR spectroscopy and by mass spectrometry. The results showed that this compound was a D(-)-threo chloramphenicol. This is the first report of chloramphenicol production by a Saccharothrix species