Incursion of meteoric waters into the ductile regime in an active orogen

Rapid tectonic uplift on the Alpine Fault, New Zealand, elevates topography, regional geothermal gradients, and the depth to the brittle ductile transition, and drives fluid flow that influences deformation and mineralisation within the orogen. Oxygen and hydrogen stable isotopes, fluid inclusion and Fourier Transform Infrared (FT-IR) analyses of quartz from veins which formed at a wide range of depths, temperatures and deformation regimes identify fluid sources and the depth of penetration of meteoric waters. Most veins formed under brittle conditions and with isotope signatures (δ18OH2O = −9.0 to +8.7‰VSMOW and ‰ ) indicative of progressively rock-equilibrated meteoric waters. Two generations of quartz veins that post-date mylonitic foliation but endured further ductile deformation, and hence formation below the brittle to ductile transition zone ( depth), preserve included hydrothermal fluids with values between −84 and ‰ , indicating formation from meteoric waters. FT-IR analyses of these veins show no evidence of structural hydrogen release, precluding this as a source of low values. In contrast, the oxygen isotopic signal of these fluids has almost completely equilibrated with host rocks (δ18OH2O = +2.3 to +8.7‰). These data show that meteoric waters dominate the fluid phase in the rocks, and there is no stable isotopic requirement for the presence of metamorphic fluids during the precipitation of ductilely deformed quartz veins. This requires the penetration during orogenesis of meteoric waters into and possibly below the brittle to ductile transition zone

The significance of heat transport by shallow fluid flow at an active plate boundary: the Southern Alps, New Zealand

Fluid flow can influence fault behavior. Here we quantify the role of groundwater heat advection in establishing the thermal structure of the Alpine Fault, a major tectonic boundary in southern New Zealand that accommodates most of the motion between the Australian and Pacific Plates. Convergence on the Alpine Fault has rapidly uplifted the Southern Alps, resulting in high geothermal gradients and a thin seismogenic zone. A new equilibrium temperature profile from the 818-m-deep Deep Fault Drilling Project 2B borehole has been interrogated using one-dimensional analytical models of fluid and rock advection. Models indicate a total heat flux of 720-mW m2 results from groundwater flow with Darcy velocities approximating to 7.8 × 1010 m s1. Groundwaters advect significantly more heat than rock advection in the shallow orogen (<6-km depth) and are the major control on the subsurface temperature field

Large-scale phenotyping of patients with long COVID post-hospitalization reveals mechanistic subtypes of disease

One in ten severe acute respiratory syndrome coronavirus 2 infections result in prolonged symptoms termed long coronavirus disease (COVID), yet disease phenotypes and mechanisms are poorly understood1. Here we profiled 368 plasma proteins in 657 participants ≥3 months following hospitalization. Of these, 426 had at least one long COVID symptom and 233 had fully recovered. Elevated markers of myeloid inflammation and complement activation were associated with long COVID. IL-1R2, MATN2 and COLEC12 were associated with cardiorespiratory symptoms, fatigue and anxiety/depression; MATN2, CSF3 and C1QA were elevated in gastrointestinal symptoms and C1QA was elevated in cognitive impairment. Additional markers of alterations in nerve tissue repair (SPON-1 and NFASC) were elevated in those with cognitive impairment and SCG3, suggestive of brain–gut axis disturbance, was elevated in gastrointestinal symptoms. Severe acute respiratory syndrome coronavirus 2-specific immunoglobulin G (IgG) was persistently elevated in some individuals with long COVID, but virus was not detected in sputum. Analysis of inflammatory markers in nasal fluids showed no association with symptoms. Our study aimed to understand inflammatory processes that underlie long COVID and was not designed for biomarker discovery. Our findings suggest that specific inflammatory pathways related to tissue damage are implicated in subtypes of long COVID, which might be targeted in future therapeutic trials

SARS-CoV-2-specific nasal IgA wanes 9 months after hospitalisation with COVID-19 and is not induced by subsequent vaccination

BACKGROUND: Most studies of immunity to SARS-CoV-2 focus on circulating antibody, giving limited insights into mucosal defences that prevent viral replication and onward transmission. We studied nasal and plasma antibody responses one year after hospitalisation for COVID-19, including a period when SARS-CoV-2 vaccination was introduced. METHODS: In this follow up study, plasma and nasosorption samples were prospectively collected from 446 adults hospitalised for COVID-19 between February 2020 and March 2021 via the ISARIC4C and PHOSP-COVID consortia. IgA and IgG responses to NP and S of ancestral SARS-CoV-2, Delta and Omicron (BA.1) variants were measured by electrochemiluminescence and compared with plasma neutralisation data. FINDINGS: Strong and consistent nasal anti-NP and anti-S IgA responses were demonstrated, which remained elevated for nine months (p < 0.0001). Nasal and plasma anti-S IgG remained elevated for at least 12 months (p < 0.0001) with plasma neutralising titres that were raised against all variants compared to controls (p < 0.0001). Of 323 with complete data, 307 were vaccinated between 6 and 12 months; coinciding with rises in nasal and plasma IgA and IgG anti-S titres for all SARS-CoV-2 variants, although the change in nasal IgA was minimal (1.46-fold change after 10 months, p = 0.011) and the median remained below the positive threshold determined by pre-pandemic controls. Samples 12 months after admission showed no association between nasal IgA and plasma IgG anti-S responses (R = 0.05, p = 0.18), indicating that nasal IgA responses are distinct from those in plasma and minimally boosted by vaccination. INTERPRETATION: The decline in nasal IgA responses 9 months after infection and minimal impact of subsequent vaccination may explain the lack of long-lasting nasal defence against reinfection and the limited effects of vaccination on transmission. These findings highlight the need to develop vaccines that enhance nasal immunity. FUNDING: This study has been supported by ISARIC4C and PHOSP-COVID consortia. ISARIC4C is supported by grants from the National Institute for Health and Care Research and the Medical Research Council. Liverpool Experimental Cancer Medicine Centre provided infrastructure support for this research. The PHOSP-COVD study is jointly funded by UK Research and Innovation and National Institute of Health and Care Research. The funders were not involved in the study design, interpretation of data or the writing of this manuscript

Whole-genome sequencing reveals host factors underlying critical COVID-19

Critical COVID-19 is caused by immune-mediated inflammatory lung injury. Host genetic variation influences the development of illness requiring critical care1 or hospitalization2,3,4 after infection with SARS-CoV-2. The GenOMICC (Genetics of Mortality in Critical Care) study enables the comparison of genomes from individuals who are critically ill with those of population controls to find underlying disease mechanisms. Here we use whole-genome sequencing in 7,491 critically ill individuals compared with 48,400 controls to discover and replicate 23 independent variants that significantly predispose to critical COVID-19. We identify 16 new independent associations, including variants within genes that are involved in interferon signalling (IL10RB and PLSCR1), leucocyte differentiation (BCL11A) and blood-type antigen secretor status (FUT2). Using transcriptome-wide association and colocalization to infer the effect of gene expression on disease severity, we find evidence that implicates multiple genes—including reduced expression of a membrane flippase (ATP11A), and increased expression of a mucin (MUC1)—in critical disease. Mendelian randomization provides evidence in support of causal roles for myeloid cell adhesion molecules (SELE, ICAM5 and CD209) and the coagulation factor F8, all of which are potentially druggable targets. Our results are broadly consistent with a multi-component model of COVID-19 pathophysiology, in which at least two distinct mechanisms can predispose to life-threatening disease: failure to control viral replication; or an enhanced tendency towards pulmonary inflammation and intravascular coagulation. We show that comparison between cases of critical illness and population controls is highly efficient for the detection of therapeutically relevant mechanisms of disease

Serpentine alteration as source of high dissolved silicon and elevated δ 30 5 Si 6 values to the marine Si cycle

Serpentine alteration is recognized as an important process for element cycling, however, related silicon fluxes are unknown. Pore fluids from serpentinite seamounts sampled in the Mariana forearc region during IODP Expedition 366 were investigated for their Si, B, and Sr isotope signatures (δ30Si, δ11B, and 87Sr/86Sr, respectively) to study serpentinization in the mantle wedge and shallow serpentine alteration to authigenic clays by seawater. While serpentinization in the mantle wedge caused no significant Si isotope fractionation, implying closed system conditions, serpentine alteration by seawater led to the formation of authigenic phyllosilicates, causing the highest natural fluid δ30Si values measured to date (up to +5.2 ± 0.2‰). Here we show that seafloor alteration of serpentinites is a source of Si to the ocean with extremely high fluid δ30Si values, which can explain anomalies in the marine Si budget like in the Cascadia Basin and which has to be considered in future investigations of the global marine Si cycle

Influence of hydraulic loading and effluent flux on surface surcharging in soil absorption systems

The goal of this study was to investigate how extreme hydraulic loading influences hydraulic pathways, and thus failure potential, of two soil absorption systems. A grid of tensiometers and piezometers were installed beneath and adjacent to the absorption trenches, and water height was manipulated to simulate different hydraulic loadings. At both sites, measured soil matric potentials along the trench sidewalls increased toward zero as water height increased over time, indicating that water was preferentially flowing laterally above the biomat zones. Saturated hydraulic conductivity (Ks) of the soil and biomat, and other hydraulic parameters were calibrated using inverse modeling procedures in HYDRUS-2D. We found generally good agreement between measured and predicted matric potentials. The calibrated model was then used to predict fluxes through different infiltrative zones under typical and extreme hydraulic loads. Modeling indicated that the overall infiltration rates through the biomat and subbiomat zones fell within a relatively narrow range of 0.025-0.046m/day at the two sites. Under extreme hydraulic loading to trenches, fluxes through the upper trench sidewalls (i.e., the exfiltration zone) were predicted to be substantially greater (i.e., 80% of total flux) than through the biomat zone. This confirms the conclusions made from field results, that a permeable exfiltration zone provides a critical buffer to surface surcharging during extreme trench loading. Conversely, the presence of a high sidewall biomat can reduce sidewall exfiltration of effluent, and therefore increase the likelihood of surface surcharging

Changes in hot spring temperature and hydrogeology of the Alpine Fault hanging wall, New Zealand, induced by distal South Island earthquakes

Thermal springs in the Southern Alps, New Zealand, originate through penetration of fluids into a thermal anomaly generated by rapid uplift and exhumation on the Alpine Fault. Copland hot spring (43.629S, 169.946E) is one of the most vigorously flowing, hottest of the springs, discharging strongly effervescent CO2‐rich 56–58°C water at 6 ± 1 l sec−1. Shaking from the Mw7.8 Dusky Sound (Fiordland) 2009 and Mw7.1 Darfield (Canterbury) 2010 earthquakes, 350 and 180 km from the spring, respectively, resulted in a characteristic approximately 1°C delayed cooling over 5 days. A decrease in conductivity and increase in pH were measured following the Mw7.1 Darfield earthquake. Earthquake‐induced decreases in Cl, Li, B, Na, K, Sr and Ba concentrations and an increase in SO4 concentration reflect higher proportions of shallow‐circulating meteoric fluid mixing in the subsurface. Shaking at amplitudes of approximately 0.5% g Peak Ground Acceleration (PGA) and/or 0.05–0.10 MPa dynamic stress influences Copland hot spring temperature, which did not respond during the Mw6.3 Christchurch 2011 aftershock or other minor earthquakes. Such thresholds should be exceeded every 1–10 years in the central Southern Alps. The characteristic cooling response at low shaking intensities (MM III–IV) and seismic energy densities (approximately 10−1 J m−3) from intermediate‐field distances was independent of variations in spectral frequency, without the need for post‐seismic recovery. Observed temperature and fluid chemistry responses are inferred to reflect subtle changes in the fracture permeability of schist mountains adjacent to the spring. Permanent 10−7–10−6 strains recorded by cGPS reflect opening or generation of fractures, allowing greater quantities of relatively cool near‐surface groundwater to mix with upwelling hot water. Active deformation, tectonic and topographic stress in the Alpine Fault hanging wall, where orographic rainfall, uplift and erosion are extreme, make the Southern Alps hydrothermal system particularly susceptible to earthquake‐induced transient permeability

Fluid–rock interactions in the shallow Mariana forearc: carbon cycling and redox conditions

Few data exist that provide insight into processes affecting the long-term carbon cycle at shallow forearc depths. To better understand the mobilization of C in sediments and crust of the subducting slab, we investigated carbonate materials that originate from the subduction channel at the Mariana forearc (< 20 km) and were recovered during International Ocean Discovery Program Expedition 366. Calcium carbonates occur as vein precipitates within metavolcanic and metasedimentary clasts. The clasts represent portions of the subducting lithosphere, including ocean island basalt, that were altered at lower blueschist facies conditions and were subsequently transported to the forearc seafloor by serpentinite mud volcanism. Euhedral aragonite and calcite and the lack of deformation within the veins suggest carbonate formation in a stress-free environment after peak metamorphism affected their hosts. Intergrowth with barite and marked negative Ce anomalies in carbonate attest the precipitation within a generally oxic environment, that is an environment not controlled by serpentinization. Strontium and O isotopic compositions in carbonate (87Sr/ 86Sr = 0.7052 to 0.7054, δ 18OVSMOW = 20 to 24 ‰) imply precipitation from slab-derived fluids at temperatures between ∼ 130 and 300 ◦C. These temperature estimates are consistent with the presence of blueschist facies phases such as lawsonite coexisting with the carbonates in some veins. Incorporated C is inorganic (δ 13CVPDB = −1 ‰ to +4 ‰) and likely derived from the decarbonation of calcareous sediment and/or oceanic crust. These findings provide evidence for the mobilization of C in the downgoing slab at depths of < 20 km. Our study shows for the first time in detail that a portion of this C forms carbonate precipitates in the subduction channel of an active convergent margin. This process may be an important asset in understanding the deep carbon cycle since it highlights that some C is lost from the subducting lithosphere before reaching greater depths