The Dalradian rocks of Scotland: an introduction

The Dalradian Supergroup and its basement rocks, together with younger plutons, underpin most of the Grampian Highlands and the islands of the Inner Hebrides between the Highland Boundary and Great Glen faults. The Dalradian is a mid-Neoproterozoic to early-Ordovician sequence of largely clastic metasedimentary rocks, with some volcanic units, which were deformed and metamorphosed to varying degrees during the Early Palaeozoic Caledonian Orogeny. Sedimentation of the lower parts of the Dalradian Supergroup, possibly commencing about 730 million years ago, took place initially in fault-bounded rift basins, within the supercontinent of Rodinia and adjacent to sectors of continental crust that were later to become the foundations of North America, Greenland and Scandinavia. Later sedimentation reflected increased instability, culminating between 600 and 570 million years ago in continental rupture, volcanicity and the development of the Iapetus Ocean. This left the crustal foundations of Scotland, together with those of North America and Greenland, on a laterally extensive passive margin to the new continent of Laurentia, where turbiditic sedimentation continued for about 85 million years. Later plate movements led to closure of the Iapetus Ocean and the multi-event Caledonian Orogeny. Most of the deformation and metamorphism of the Dalradian strata peaked at about 470 million years ago, during the mid-Ordovician Grampian Event, which has been attributed to the collision of an oceanic arc with Laurentia. The later, mid-Silurian Scandian Event, attributed to the collision of the continent of Baltica with Laurentia and the final closure of the Iapetus Ocean, apparently had little effect on the Dalradian rocks but marked the start of late-orogenic uplift and extensive magmatism in the Grampian Highlands that continued until Early Devonian times. The Dalradian rocks thus record a wide range of sedimentary environments (alluvial, tidal, deltaic, shallow marine, turbiditic, debris flow) and a complex structural and metamorphic history. In areas of low strain, original sedimentary and volcanic structures are well preserved, even at relatively high metamorphic grades. There is convincing evidence for glacial episodes of worldwide importance and economic deposits of stratiform barium minerals are unique. The Grampian Highlands include two of the World's type-areas for metamorphic zonation, Barrovian and Buchan, with spectacular examples of the key metamorphic minerals, and various stages of migmatite development. Polyphase folding is widespread on all scales and gives rise to a range of associated cleavages and lineations. Regional dislocations, both ductile and brittle, are associated with a range of shear fabrics, breccias, clay gouges and veining

Implications on Livelihoods and the Environment of Uptake of Gasifier Cook Stoves among Kenya’s Rural Households

A majority of people in developing countries use biomass energy for cooking and heating due to its affordability, accessibility and convenience. However, unsustainable biomass use leads to forest degradation and climate change. Therefore, this study was carried out in Kwale County, Kenya, on the use of a biochar-producing gasifier cook stove and implications of its uptake on livelihoods and the environment. Fifty households were trained and issued with a gasifier for free. After 2–3 months of gasifier use, a survey was conducted to investigate the implications of its uptake. The direct impacts included reduced fuel consumption by 38%, reduced time spent in firewood collection, reduced expenditure on cooking fuel, diversification of cooking fuels, improved kitchen conditions and reduced time spent on cooking. The potential benefits included income generation, increased food production, reduced impacts on environment and climate change and reduced health problems. Improved biomass cook stoves can alleviate problems with current cooking methods, which include inefficient fuel use, health issues caused by smoke, and environmental problems. These benefits could contribute to development through alleviating poverty and hunger, promoting gender equality, enhancing good health and sustainable ecosystems and mitigating climate change. The study recommends the promotion of cleaner cooking stoves, particularly gasifiers, among households in rural areas while paying attention to user needs and preferences

Biomimetic Sniffing Improves the Detection Performance of a 3D Printed Nose of a Dog and a Commercial Trace Vapor Detector

Unlike current chemical trace detection technology, dogs actively sniff to acquire an odor sample. Flow visualization experiments with an anatomically-similar 3D printed dog’s nose revealed the external aerodynamics during canine sniffing, where ventral-laterally expired air jets entrain odorant-laden air toward the nose, thereby extending the “aerodynamic reach” for inspiration of otherwise inaccessible odors. Chemical sampling and detection experiments quantified two modes of operation with the artificial nose-active sniffing and continuous inspiration-and demonstrated an increase in odorant detection by a factor of up to 18 for active sniffing. A 16-fold improvement in detection was demonstrated with a commercially-available explosives detector by applying this bio-inspired design principle and making the device “sniff” like a dog. These lessons learned from the dog may benefit the next-generation of vapor samplers for explosives, narcotics, pathogens, or even cancer, and could inform future bio-inspired designs for optimized sampling of odor plumes.United States. Department of Homeland Security. Advanced Research Projects Agency (Interagency Agreement HSHQPM-13-X-00107)United States. Air Force (Contract FA8721-05-C-0002)United States. Air Force (Contract FA8702-15-D-0001

Caledonian foreland basin sedimentation : A new depositional model for the Upper Silurian-Lower Devonian Lower Old Red Sandstone of the Midland Valley Basin, Scotland

Open Access via Wiley publishing agreement. We thank Stuart Archer, Brian Hampton and the anonymous reviewer for their thoughtful and constructive reviews of this manuscript, which has benefited greatly from their attention. We also thank the Associate Editors at Basin Research for their time, advice and suggestions during the submission process. DATA AVAILABILITY STATEMENT The data that support the findings of this study are available from the corresponding author upon reasonable request.Peer reviewedPublisher PD

The anaplerotic node is essential for the intracellular survival of Mycobacterium tuberculosis

Enzymes at the phosphoenolpyruvate (PEP)–pyruvate–oxaloacetate or anaplerotic (ANA) node control the metabolic flux to glycolysis, gluconeogenesis, and anaplerosis. Here we used genetic, biochemical, and 13C isotopomer analysis to characterize the role of the enzymes at the ANA node in intracellular survival of the world's most successful bacterial pathogen, Mycobacterium tuberculosis (Mtb). We show that each of the four ANA enzymes, pyruvate carboxylase (PCA), PEP carboxykinase (PCK), malic enzyme (MEZ), and pyruvate phosphate dikinase (PPDK), performs a unique and essential metabolic function during the intracellular survival of Mtb. We show that in addition to PCK, intracellular Mtb requires PPDK as an alternative gateway into gluconeogenesis. Propionate and cholesterol detoxification was also identified as an essential function of PPDK revealing an unexpected role for the ANA node in the metabolism of these physiologically important intracellular substrates and highlighting this enzyme as a tuberculosis (TB)-specific drug target. We show that anaplerotic fixation of CO2 through the ANA node is essential for intracellular survival of Mtb and that Mtb possesses three enzymes (PCA, PCK, and MEZ) capable of fulfilling this function. In addition to providing a back-up role in anaplerosis we show that MEZ also has a role in lipid biosynthesis. MEZ knockout strains have an altered cell wall and were deficient in the initial entry into macrophages. This work reveals that the ANA node is a focal point for controlling the intracellular replication of Mtb, which goes beyond canonical gluconeogenesis and represents a promising target for designing novel anti-TB drugs

Impacts of Poultry House Environment on Poultry Litter Bacterial Community Composition

Viral and bacterial pathogens are a significant economic concern to the US broiler industry and the ecological epicenter for poultry pathogens is the mixture of bedding material, chicken excrement and feathers that comprises the litter of a poultry house. This study used high-throughput sequencing to assess the richness and diversity of poultry litter bacterial communities, and to look for connections between these communities and the environmental characteristics of a poultry house including its history of gangrenous dermatitis (GD). Cluster analysis of 16S rRNA gene sequences revealed differences in the distribution of bacterial phylotypes between Wet and Dry litter samples and between houses. Wet litter contained greater diversity with 90% of total bacterial abundance occurring within the top 214 OTU clusters. In contrast, only 50 clusters accounted for 90% of Dry litter bacterial abundance. The sixth largest OTU cluster across all samples classified as an Arcobacter sp., an emerging human pathogen, occurring in only the Wet litter samples of a house with a modern evaporative cooling system. Ironically, the primary pathogenic clostridial and staphylococcal species associated with GD were not found in any house; however, there were thirteen 16S rRNA gene phylotypes of mostly Gram-positive phyla that were unique to GD-affected houses and primarily occurred in Wet litter samples. Overall, the poultry house environment appeared to substantially impact the composition of litter bacterial communities and may play a key role in the emergence of food-borne pathogens

Ancient genomes reveal a high diversity of Mycobacterium leprae in medieval Europe.

Studying ancient DNA allows us to retrace the evolutionary history of human pathogens, such as Mycobacterium leprae, the main causative agent of leprosy. Leprosy is one of the oldest recorded and most stigmatizing diseases in human history. The disease was prevalent in Europe until the 16th century and is still endemic in many countries with over 200,000 new cases reported annually. Previous worldwide studies on modern and European medieval M. leprae genomes revealed that they cluster into several distinct branches of which two were present in medieval Northwestern Europe. In this study, we analyzed 10 new medieval M. leprae genomes including the so far oldest M. leprae genome from one of the earliest known cases of leprosy in the United Kingdom-a skeleton from the Great Chesterford cemetery with a calibrated age of 415-545 C.E. This dataset provides a genetic time transect of M. leprae diversity in Europe over the past 1500 years. We find M. leprae strains from four distinct branches to be present in the Early Medieval Period, and strains from three different branches were detected within a single cemetery from the High Medieval Period. Altogether these findings suggest a higher genetic diversity of M. leprae strains in medieval Europe at various time points than previously assumed. The resulting more complex picture of the past phylogeography of leprosy in Europe impacts current phylogeographical models of M. leprae dissemination. It suggests alternative models for the past spread of leprosy such as a wide spread prevalence of strains from different branches in Eurasia already in Antiquity or maybe even an origin in Western Eurasia. Furthermore, these results highlight how studying ancient M. leprae strains improves understanding the history of leprosy worldwide