Positive Carotenoid Balance Correlates with Greater Reproductive Performance in a Wild Bird

Background: Carotenoids can confer somatic and reproductive benefits, but most evidence is from captive animal experimentation or single time-point sampling. Another perhaps more informative means by which to assess physiological contributions to animal performance is by tracking an individual’s ability to increase or sustain carotenoids or other health-related molecules over time, as these are likely to be temporally variable. Methodology/Principal Findings: In a field study of North American barn swallows (Hirundo rustica erythrogaster), we analyzed within-individual changes in carotenoid concentrations by repeatedly sampling the carotenoid profiles of individuals over the course of the breeding season. Our results demonstrate that carotenoid concentrations of individuals are temporally dynamic and that season-long balance of these molecules, rather than single time-point samples, predict reproductive performance. This was true even when controlling for two important variables associated with reproductive outcomes: (1) timing of breeding and (2) sexually selected plumage coloration, which is itself positively correlated with and concomitantly changes with circulating carotenoid concentrations. Conclusions/Significance: While reproduction itself is purported to impose health stress on organisms, these data suggest that free-ranging, high-quality individuals can mitigate such costs, by one or several genetic, environmental (diet), or physiological mechanisms. Moreover, the temporal variations in both health-linked physiological measures and morphological traits we uncover here merit further examination in other species, especially when goals include the estimation of signal information content or the costs of trait expression

Charge Violation and Alice Behavior in Global and Textured Strings

Spontaneous breaking of global symmetries can produce ``Alice'' strings: line defects which make unbroken symmetries multivalued, induce apparent charge violation via Aharonov-Bohm interactions, and form point defects when twisted into loops. We demonstrate this behavior for both divergent and textured global Alice strings. Both adiabatically scatter charged particles via effective Wilson lines. For textured Alice strings, such Wilson lines occur at all radii, and are multivalued only inside the string. This produces measurable effects, including path-dependent charge violation.Comment: 32 pages, 2 epsfigs, Revte

The importance of cross-validation, accuracy, and precision for measuring plumage color: A comment on Vaquero-Alba et al. (2016)

Vaquero-Alba and colleagues published a study in The Auk: Ornithological Advances comparing objective color measurements of plumage taken in the field directly on a bird’s body to those taken in the lab on collected feathers arranged to emulate the appearance of a bird’s natural plumage. Although the field measures of plumage color were less repeatable than lab measures, the authors concluded that measurements taken in the field were more representative of a bird’s ‘‘true color.’’ Accordingly, they recommend that researchers should bring spectrophotometers into the field to measure color on live birds. We question the assumption that their field measurements represent true color and highlight concerns regarding their experimental design and methodology. Because they did not measure color of live birds in the lab or the color of plucked feathers in the field, they cannot directly test whether the assessment of color in the field on a live bird is superior. Also, rather than assume field measures are the most accurate or precise way to assess plumage color, we suggest cross-validation with other methodologies, such as digital photography, pigment biochemistry, or measures of a known color standard in both environments. Importantly, researchers should be aware of the limitations and advantages of various methods for measuring plumage color so they can use the method most appropriate for their study. Vaquero-Alba y sus colaboradores publicaron un estudio en The Auk comparando medidas objetivas del color del plumaje tomadas en el campo directamente en el cuerpo del ave con medidas tomadas en el laboratorio en plumas recolectadas y organizadas para emular la apariencia natural del plumaje. Aunque las medidas de campo del color del plumaje fueron menos repetibles que las de laboratorio, los autores concluyeron que las medidas tomadas en el campo fueron ma´s representativas del ‘‘color verdadero’’ de un ave. En consecuencia, recomendaron que los investigadores deben llevar espectrofot ´ ometros a los sitios de campo para medir el color en aves vivas. Cuestionamos la suposici ´on de que sus mediciones de campo representan el ‘‘color verdadero’’ y resaltamos nuestras preocupaciones con respecto a su dise ˜no experimental y metodolog´ıa. Debido a que ellos no midieron el color de las aves vivas en el laboratorio ni el color de las plumas sueltas en el campo, no pueden evaluar directamente si la evaluaci ´on del color en el campo en un ave viva es superior. Tambi´en, en vez de asumir que las medidas de campo son la forma ma´s exacta o precisa de determinar el color del plumaje, sugerimos que se haga una validaci ´on cruzada con otras metodolog´ıas como la fotograf´ıa digital, la bioqu´ımica de los pigmentos o las medidas de un esta´ndar de un color conocido en ambos ambientes. Es importante que los investigadores tengan en cuenta las limitaciones y avances en varios m´etodos para medir el color del plumaje para que puedan usar el m´etodo ma´s apropiado para su estudio

The importance of cross-validation, accuracy, and precision for measuring plumage color: A comment on Vaquero-Alba et al. (2016)

Vaquero-Alba and colleagues published a study in The Auk: Ornithological Advances comparing objective color measurements of plumage taken in the field directly on a bird’s body to those taken in the lab on collected feathers arranged to emulate the appearance of a bird’s natural plumage. Although the field measures of plumage color were less repeatable than lab measures, the authors concluded that measurements taken in the field were more representative of a bird’s ‘‘true color.’’ Accordingly, they recommend that researchers should bring spectrophotometers into the field to measure color on live birds. We question the assumption that their field measurements represent true color and highlight concerns regarding their experimental design and methodology. Because they did not measure color of live birds in the lab or the color of plucked feathers in the field, they cannot directly test whether the assessment of color in the field on a live bird is superior. Also, rather than assume field measures are the most accurate or precise way to assess plumage color, we suggest cross-validation with other methodologies, such as digital photography, pigment biochemistry, or measures of a known color standard in both environments. Importantly, researchers should be aware of the limitations and advantages of various methods for measuring plumage color so they can use the method most appropriate for their study. Vaquero-Alba y sus colaboradores publicaron un estudio en The Auk comparando medidas objetivas del color del plumaje tomadas en el campo directamente en el cuerpo del ave con medidas tomadas en el laboratorio en plumas recolectadas y organizadas para emular la apariencia natural del plumaje. Aunque las medidas de campo del color del plumaje fueron menos repetibles que las de laboratorio, los autores concluyeron que las medidas tomadas en el campo fueron ma´s representativas del ‘‘color verdadero’’ de un ave. En consecuencia, recomendaron que los investigadores deben llevar espectrofot ´ ometros a los sitios de campo para medir el color en aves vivas. Cuestionamos la suposici ´on de que sus mediciones de campo representan el ‘‘color verdadero’’ y resaltamos nuestras preocupaciones con respecto a su dise ˜no experimental y metodolog´ıa. Debido a que ellos no midieron el color de las aves vivas en el laboratorio ni el color de las plumas sueltas en el campo, no pueden evaluar directamente si la evaluaci ´on del color en el campo en un ave viva es superior. Tambi´en, en vez de asumir que las medidas de campo son la forma ma´s exacta o precisa de determinar el color del plumaje, sugerimos que se haga una validaci ´on cruzada con otras metodolog´ıas como la fotograf´ıa digital, la bioqu´ımica de los pigmentos o las medidas de un esta´ndar de un color conocido en ambos ambientes. Es importante que los investigadores tengan en cuenta las limitaciones y avances en varios m´etodos para medir el color del plumaje para que puedan usar el m´etodo ma´s apropiado para su estudio

A genetic linkage map and comparative mapping of the prairie vole (Microtus ochrogaster) genome

<p>Abstract</p> <p>Background</p> <p>The prairie vole (<it>Microtus ochrogaster</it>) is an emerging rodent model for investigating the genetics, evolution and molecular mechanisms of social behavior. Though a karyotype for the prairie vole has been reported and low-resolution comparative cytogenetic analyses have been done in this species, other basic genetic resources for this species, such as a genetic linkage map, are lacking.</p> <p>Results</p> <p>Here we report the construction of a genome-wide linkage map of the prairie vole. The linkage map consists of 406 markers that are spaced on average every 7 Mb and span an estimated ~90% of the genome. The sex average length of the linkage map is 1707 cM, which, like other Muroid rodent linkage maps, is on the lower end of the length distribution of linkage maps reported to date for placental mammals. Linkage groups were assigned to 19 out of the 26 prairie vole autosomes as well as the X chromosome. Comparative analyses of the prairie vole linkage map based on the location of 387 Type I markers identified 61 large blocks of synteny with the mouse genome. In addition, the results of the comparative analyses revealed a potential elevated rate of inversions in the prairie vole lineage compared to the laboratory mouse and rat.</p> <p>Conclusions</p> <p>A genetic linkage map of the prairie vole has been constructed and represents the fourth genome-wide high-resolution linkage map reported for Muroid rodents and the first for a member of the Arvicolinae sub-family. This resource will advance studies designed to dissect the genetic basis of a variety of social behaviors and other traits in the prairie vole as well as our understanding of genome evolution in the genus <it>Microtus</it>.</p

Topologically Alice Strings and Monopoles

Symmetry breaking can produce ``Alice'' strings, which alter scattered charges and carry monopole number and charge when twisted into loops. Alice behavior arises algebraically, when strings obstruct unbroken symmetries -- a fragile criterion. We give a topological criterion, compelling Alice behavior or deforming it away. Our criterion, that \pi_o(H) acts nontrivially on \pi_1(H), links topologically Alice strings to topological monopoles. We twist topologically Alice loops to form monopoles. We show that Alice strings of condensed matter systems (nematic liquid crystals, helium 3A, and related non-chiral Bose condensates and amorphous chiral superconductors) are topologically Alice, and support fundamental monopole charge when twisted into loops. Thus they might be observed indirectly, not as strings, but as loop-like point defects. We describe other models, showing Alice strings failing our topological criterion; and twisted Alice loops supporting deposited, but not fundamental, monopole number.Comment: 2 figures; this paper consolidates preprints hep-th/0304161 and hep-th/0304162, to appear in Phys. Rev.

Positive Carotenoid Balance Correlates with Greater Reproductive Performance in a Wild Bird

Background: Carotenoids can confer somatic and reproductive benefits, but most evidence is from captive animal experimentation or single time-point sampling. Another perhaps more informative means by which to assess physiological contributions to animal performance is by tracking an individual’s ability to increase or sustain carotenoids or other healthrelated molecules over time, as these are likely to be temporally variable. Methodology/Principal Findings: In a field study of North American barn swallows (Hirundo rustica erythrogaster), we analyzed within-individual changes in carotenoid concentrations by repeatedly sampling the carotenoid profiles of individuals over the course of the breeding season. Our results demonstrate that carotenoid concentrations of individuals are temporally dynamic and that season-long balance of these molecules, rather than single time-point samples, predict reproductive performance. This was true even when controlling for two important variables associated with reproductive outcomes: (1) timing of breeding and (2) sexually selected plumage coloration, which is itself positively correlated with and concomitantly changes with circulating carotenoid concentrations. Conclusions/Significance: While reproduction itself is purported to impose health stress on organisms, these data suggest that free-ranging, high-quality individuals can mitigate such costs, by one or several genetic, environmental (diet), or physiological mechanisms. Moreover, the temporal variations in both health-linked physiological measures an

Blood Parasite Infection Differentially Relates to Carotenoid-Based Plumage and Bill Color in the American Goldfinch

Male and female American goldfinches (Spinus tristis) express condition-dependent carotenoid-based plumage and bill coloration. Plumage color is relatively static, as pigments incorporated into feathers during the spring molt cannot be mobilized thereafter. In contrast, bill color is dynamic, reflecting changes in condition over short time periods. Previous studies have shown that male and female ornaments, though similar in expression, are differentially related to measures of immunocompetence, suggesting that the relationship between ornamentation and parasite infection may differ between the sexes. In this study, we evaluate the relationship between condition-dependent ornamentation (plumage and bill color) and blood parasite infection in male and female American goldfinches. We captured goldfinches after completion of the pre-alternate molt and prior to the onset of nesting and assessed prevalence of Trypanosoma parasites via blood smears. Plumage color strongly predicted trypanosome infection: Birds with more colorful plumage were less likely to present infections. In contrast, we detected no relationship between infection and bill color, which in other studies has been shown to dynamically reflect current condition. Sex did not affect the relationship between infection status and either ornament. Together, these results suggest that physiological pathways linking carotenoid ornamentation and infection may vary even within a single species

Evolutionary innovation and diversification of carotenoid-based pigmentation in finches

© 2016 The Author(s). Evolution © 2016 The Society for the Study of Evolution. The ornaments used by animals to mediate social interactions are diverse, and by reconstructing their evolutionary pathways we can gain new insights into the mechanisms underlying ornamental innovation and variability. Here, we examine variation in plumage carotenoids among the true finches (Aves: Fringillidae) using biochemical and comparative phylogenetic analyses to reconstruct the evolutionary history of carotenoid states and evaluate competing models of carotenoid evolution. Our comparative analyses reveal that the most likely ancestor of finches used dietary carotenoids as yellow plumage colorants, and that the ability to metabolically modify dietary carotenoids into more complex pigments arose secondarily once finches began to use modified carotenoids to create red plumage. Following the evolutionary “innovation” that enabled modified red carotenoid pigments to be deposited as plumage colorants, many finch species subsequently modified carotenoid biochemical pathways to create yellow plumage. However, no reversions to dietary carotenoids were observed. The finding that ornaments and their underlying mechanisms may be operating under different selection regimes—where ornamental trait colors undergo frequent reversions (e.g., between red and yellow plumage) while carotenoid metabolization mechanisms are more conserved—supports a growing empirical framework suggesting different evolutionary patterns for ornaments and the mechanistic innovations that facilitate their diversification

Idea-caution before exploitation:the use of cybersecurity domain knowledge to educate software engineers against software vulnerabilities

The transfer of cybersecurity domain knowledge from security experts (‘Ethical Hackers’) to software engineers is discussed in terms of desirability and feasibility. Possible mechanisms for the transfer are critically examined. Software engineering methodologies do not make use of security domain knowledge in its form of vulnerability databases (e.g. CWE, CVE, Exploit DB), which are therefore not appropriate for this purpose. An approach based upon the improved use of pattern languages that encompasses security domain knowledge is proposed