Active particle dynamics beyond the jamming density

Many biological systems form colonies at high density. Passive granular systems will be jammed at such densities, yet for the survival of biological systems it is crucial that they are dynamic. We construct a phase diagram for a system of active particles interacting via Vicsek alignment, and vary the density, self-propulsion force, and orientational noise. We find that the system exhibits four different phases, characterized by transitions in the effective diffusion constant and in the orientational order parameter. Our simulations show that there exists an optimal noise such that particles require a minimal force to unjam, allowing for rearrangements.Comment: 7 pages, 8 figure

Trusty URIs: Verifiable, Immutable, and Permanent Digital Artifacts for Linked Data

To make digital resources on the web verifiable, immutable, and permanent, we propose a technique to include cryptographic hash values in URIs. We call them trusty URIs and we show how they can be used for approaches like nanopublications to make not only specific resources but their entire reference trees verifiable. Digital artifacts can be identified not only on the byte level but on more abstract levels such as RDF graphs, which means that resources keep their hash values even when presented in a different format. Our approach sticks to the core principles of the web, namely openness and decentralized architecture, is fully compatible with existing standards and protocols, and can therefore be used right away. Evaluation of our reference implementations shows that these desired properties are indeed accomplished by our approach, and that it remains practical even for very large files.Comment: Small error corrected in the text (table data was correct) on page 13: "All average values are below 0.8s (0.03s for batch mode). Using Java in batch mode even requires only 1ms per file.

Breaking the Mould and the Birth of a New Journal: Online Educational Research Journal

Academic journals are evolving and proliferating but despite their success there is much room for improvement. The traditional paper based model is expensive, constrained by space, exclusive and beset with problems of refereeing and publication time. The newer on-line journals go some way to dealing with these issues but they fail to capitalise on the possibilities opened up by the web. This paper launches a new journal Online Educational Research Journal (OERJ) which is free, unconstrained by space and accessible to all. It takes a novel approach to refereeing allowing discussion online and deals with the shortage of refereeing by requiring authors to reciprocate. A key feature of the journal is that papers are guaranteed to be published albeit anonymously in the first instance. After receiving the ratings and comments of referees which will go online the paper becomes onymous unless the author chooses to withdraw

Extending the concept of job withdrawal: Identifying, predicting, and understanding adaptation to work

Thesis (B.S.) in Liberal Arts and Sciences -- University of Illinois at Urbana-Champaign, 1987.Bibliography: leaves 42-46.Microfiche of typescript. [Urbana, Ill.]: Photographic Services, University of Illinois, U of I Library, [1987]. 2 microfiches (81 frames): negative

Grapes(Chk1) prevents nuclear CDK1 activation by delaying cyclin B nuclear accumulation

Entry into mitosis is characterized by a dramatic remodeling of nuclear and cytoplasmic compartments. These changes are driven by cyclin-dependent kinase 1 (CDK1) activity, yet how cytoplasmic and nuclear CDK1 activities are coordinated is unclear. We injected cyclin B (CycB) into Drosophila melanogaster embryos during interphase of syncytial cycles and monitored effects on cytoplasmic and nuclear mitotic events. In untreated embryos or embryos arrested in interphase with a protein synthesis inhibitor, injection of CycB accelerates nuclear envelope breakdown and mitotic remodeling of the cytoskeleton. Upon activation of the Grapes(checkpoint kinase 1) (Grp(Chk1))-dependent S-phase checkpoint, increased levels of CycB drives cytoplasmic but not nuclear mitotic events. Grp(Chk1) prevents nuclear CDK1 activation by delaying CycB nuclear accumulation through Wee1-dependent and independent mechanisms

Insulin-like growth factors (IGF) in muscle development. Expression of IGF-I, the IGF-I receptor, and an IGF binding protein during myoblast differentiation.

The insulin-like growth factors (IGFs) I and II exert pleiotropic effects on diverse cell types through interaction with specific high affinity cell surface receptors and with locally produced binding proteins. In skeletal muscle and in myoblast cell lines, the functions of IGF-I and -II are complex. Both growth factors appear capable of stimulating cellular proliferation and differentiation, as well as exerting insulin-like effects on intermediary metabolism. We have demonstrated recently that the expression of IGF-II and its receptor is induced during the terminal differentiation of the myoblast cell line, C2, and have suggested that IGF-II may be an autocrine growth factor in these cells (Tollefsen, S.E., Sadow, J.L., and Rotwein, P. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 1543-1547). We now have examined this cell line for expression of other components involved in IGF signaling. The synthesis of IGF-I is low during myoblast proliferation; IGF-I mRNA can be detected only through use of a sensitive solution hybridization assay. Typical IGF-I receptors can be measured in myoblasts, whereas IGF binding proteins cannot be detected in proliferating cells or in conditioned culture medium. During myogenic differentiation, IGF-I mRNA levels increase transiently by 6-10-fold within 48-72 h. The expression of IGF-I mRNA is accompanied by a 2.5-fold accumulation of IGF-I in the culture medium. IGF-I receptors also increase transiently, doubling by 48 h after the onset of differentiation. By contrast, secretion of a Mr 29,000 IGF binding protein is induced 30-fold to 100 ng/ml within 16 h and continues to increase throughout differentiation. These studies demonstrate that several components critical to IGF action are produced in a fusing skeletal muscle cell line in a differentiation-dependent manner and suggest that both IGF-I and IGF-II may be autocrine factors for muscle

Facilitating the analysis of COVID-19 literature through a knowledge graph

At the end of 2019, Chinese authorities alerted the World Health Organization (WHO) of the outbreak of a new strain of the coronavirus, called SARS-CoV-2, which struck humanity by an unprecedented disaster a few months later. In response to this pandemic, a publicly available dataset was released on Kaggle which contained information of over 63,000 papers. In order to facilitate the analysis of this large mass of literature, we have created a knowledge graph based on this dataset. Within this knowledge graph, all information of the original dataset is linked together, which makes it easier to search for relevant information. The knowledge graph is also enriched with additional links to appropriate, already existing external resources. In this paper, we elaborate on the different steps performed to construct such a knowledge graph from structured documents. Moreover, we discuss, on a conceptual level, several possible applications and analyses that can be built on top of this knowledge graph. As such, we aim to provide a resource that allows people to more easily build applications that give more insights into the COVID-19 pandemic

The Septins Function in G1 Pathways that Influence the Pattern of Cell Growth in Budding Yeast

The septins are a conserved family of proteins that have been proposed to carry out diverse functions. In budding yeast, the septins become localized to the site of bud emergence in G1 but have not been thought to carry out important functions at this stage of the cell cycle. We show here that the septins function in redundant mechanisms that are required for formation of the bud neck and for the normal pattern of cell growth early in the cell cycle. The Shs1 septin shows strong genetic interactions with G1 cyclins and is directly phosphorylated by G1 cyclin-dependent kinases, consistent with a role in early cell cycle events. However, Shs1 phosphorylation site mutants do not show genetic interactions with the G1 cyclins or obvious defects early in the cell cycle. Rather, they cause an increased cell size and aberrant cell morphology that are dependent upon inhibitory phosphorylation of Cdk1 at the G2/M transition. Shs1 phosphorylation mutants also show defects in interaction with the Gin4 kinase, which associates with the septins during G2/M and plays a role in regulating inhibitory phosphorylation of Cdk1. Phosphorylation of Shs1 by G1 cyclin-dependent kinases plays a role in events that influence Cdk1 inhibitory phosphorylation