Modelling harbour seal movements

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Harbour seals (Phoca vitulina) around an operational tidal turbine in Strangford Narrows : no barrier effect but small changes in transit behaviour

Funding: NERC Marine Renewable Energy Knowledge Exchange Programme (Contract 4060038637) and NERC grant SMRU1001.1. Data were obtained from 32 electronic tags that were glued to the fur of harbour seals (Phoca vitulina) in and around Strangford Lough, Northern Ireland, during the environmental monitoring of the SeaGen tidal turbine. 2. This study provides the first detailed information on the behaviour of marine mammals close to a commercial-scale tidal energy device. The turbine did not prevent transit of the animals through the channel and therefore did not result in a ‘barrier’ effect. 3. However, the animals' behaviour did change when the turbine was operating, demonstrating the importance of allowing for behavioural responses when estimating collision risks associated with tidal turbines. 4. Tagged animals passed the location of the device more frequently during slack water than when the current was running. In 2010 the frequency of transits by tagged seals reduced by 20% (95% CI: 10–50%) when the turbine was on, relative to when it was off. This effect was stronger when considering daylight hours only with a reduction of transit rate of 57% (95% CI: 25–64%). Seals tagged during the operational period transited approximately 250 m either side of the turbine suggesting some degree of local avoidance compared with the pre-installation results. 5. The results presented here have implications for monitoring and managing the potential interactions between tidal turbines and marine wildlife. Principally that the design of telemetry studies for measuring change in response to developments should seek to understand and take into account variability in seal behaviour. 6. This study only looked at the effects of a single turbine rather than an array, and mitigation limited the ability to determine close range interactions. However, the study indicates that the effect of the turbine on Strangford Lough harbour seals was minor and that collision risk was reduced by the behaviour of the seals.Publisher PDFPeer reviewe

Recoveries in Norway of grey seals, Halichoerus grypus tagged in Great Britain

Since tagging of grey seals in Great Britain was initiated in 1951, a total of 61 seals has been recovered in coastal Norwegian waters. Most of the recovered seals had been tagged at the Orkney (35 recoveries) and the Farne Islands (17 recoveries) and captured in fishing gear on the southwestern coast of Norway. Recovery rates are highest from the Orkney and Shetland breeding stocks (about 12 and 10 per thousand) . Among the total of 61 recoveries, 58 were recovered within six months after tagging, two after three years and one after five years. We assume that after arriving in coastal Norwegian waters, the British grey seals are equally vulnerable to recovery as Norwegian grey seals of the same age. Using a known recovery rate of Norwegian grey seals, the total immigration from Great Britain is estimated to be about 14300 seals through the period 1960-1981 with an average of about 650 seals per year. There is no indication in the available information that British grey seals are recruiting to Norwegian breeding stocks or establishing new breeding colonies on the Norwegian coast

Fine-scale harbour seal usage for informed marine spatial planning

The work was funded through Scottish Government MSQ0174 contract CR/2014/11; CREEM, University of St Andrews; the National Capability fund from the Natural Environment Research Council to the Sea Mammal Research Unit (grant no. SMRU1001); and MASTS pooling initiative, which is funded by the Scottish Funding Council (grant reference HR09011).High-resolution species distribution maps are required for marine spatial planning, consenting, and licensing to assess interactions between anthropogenic activities and ecosystems. This approach can inform conservation measures for protected species and facilitate commercial developments needed for economic growth. A case study centred on Orkney, UK, is an area where concern for a declining harbour seal population has led to constraints being placed on tidal energy generation developments. Telemetry data from 54 animals tagged between 2003 and 2015 were combined with terrestrial counts from 2008 to 2015 to produce density estimation maps. Predictive habitat models using GAM-GEEs provided robust predictions in areas where telemetry data were absent, and were combined with density estimation maps. Harbour seal usage maps with confidence intervals were produced around Orkney and the North coast of Scotland. The selected habitat model showed that distance from haul out, proportion of sand in seabed sediment, and peak flow of tidal current were important predictors of space-use. Fine-scale usage maps can be used in consenting and licensing of anthropogenic developments to determine local abundance. When quantifying anthropogenic impacts through changes to species distributions, usage maps could be spatially explicitly linked to individual-based models to inform predicted movement and behaviour.Publisher PDFPeer reviewe

The generalized data management and collection protocol for Conductivity-Temperature-Depth Satellite Relay Data Loggers

Abstract The software routines for data sampling and processing that are implemented on-board telemetry devices (tags) called Conductivity-Temperature-Depth Satellite Relay Data Loggers (CTD-SRDLs) enable the simultaneous collection of biological and in-situ environmental data by animal-platforms over periods of weeks to months, despite severe energy and bandwidth limitations imposed by their relatively small size. This extended operational lifetime is made possible by the use of software protocols on-board the tags that manage sensors, data collection, storage, compression and transmission to ensure that the most useful data are sent at appropriate resolution while minimizing redundancy. While tag software is tailored to the particular species under study and the questions being addressed with a given field deployment, the philosophy behind Sea Mammal Research Unit Instrumentation Group (SMRU-IG) software protocols is to adopt a general set of principles to achieve the best results within the energy and bandwidth constraints. Here, we discuss these and review the general protocol that is used to simultaneously collect information on geographical movements, diving behaviour and in-situ oceanographic information from marine mammals

AgentSeal : agent-based model describing movement of marine central-place foragers

Acknowledgement This project has received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 746602. GA and SB have been partly funded by Gemini Wind park and the NWO (project ALWPP.2017.003). We would like to thank J. Grecian, D. Thomson, M. Fedak, M. Carter, D. Russell, A. Hall, J. Ransijn, H. Vance and M. Civil for help in model design.Peer reviewedPublisher PD

Intrinsic and extrinsic drivers of activity budgets in sympatric grey and harbour seals

D. J. F. Russell was funded by the UK Department of Energy and Climate Change (DECC) as part of their Offshore Energy Strategic Environmental Assessment programme and by Scottish Government as part of their Marine Mammal Scientific Support Research Programme (MMSS/001/11). The telemetry tags and their deployment were funded by DECC, the Natural Environment Research Council, Scottish Government, Marine Scotland Science and The European Commission.Investigation of activity budgets in relation to seasonal, intrinsic (age, sex) and extrinsic (time of day, spatial) covariates enables an understanding of how such covariates shape behavioural strategies. However, conducting such investigations in the wild is challenging, because of the required large sample size of individuals across the annual cycle, and difficulties in categorising behavioural states and analysing the resulting individual-referenced and serially correlated data. In this study, from telemetry tags deployed on 63 grey seals (Halichoerus grypus) and 126 harbour seals (Phoca vitulina) we used behavioural data, and movement data within a Bayesian state-space model (SSM), to define population-level activity budgets around Britain. Using generalised estimating equations (GEEs) we then examined how time spent in four states (resting on land (hauled out), resting at sea, foraging and travelling) was influenced by seasonal, intrinsic and extrinsic covariates. We present and discuss the following key findings. (1) We found no evidence that regional variation in foraging effort was linked to regional population trajectories in harbour seals. (2) Grey seals demonstrated sex-specific seasonal differences in their activity budgets, independent from those related to reproductive costs. (3) In these sympatric species there was evidence of temporal separation in time hauled out, but not in time foraging. (4) In both species, time spent resting at sea was separated into inshore (associated with tidal haul out availability) and offshore areas. Time spent resting at sea and on land was interchangeable to some extent, suggesting a degree of overlap in their functionality. This may result in a relaxation of the constraints associated with a central place foraging strategy. More generally, we demonstrate how a large dataset, incorporating differing tag parameters, can be analysed to define activity budgets and subsequently address important ecological questions.PostprintPeer reviewe

Individual-Based Model Framework to Assess Population Consequences of Polychlorinated Biphenyl Exposure in Bottlenose Dolphins

Marine mammals are susceptible to the effects of anthropogenic contaminants. Here we examine the effect of different polychlorinated biphenyl (PCB) accumulation scenarios on potential population growth rates using, as an example, data obtained for the population of bottlenose dolphins from Sarasota Bay, Florida. To achieve this goal, we developed an individual-based model framework that simulates the accumulation of PCBs in the population and modifies first-year calf survival based on maternal blubber PCB levels. In our example the current estimated annual PCB accumulation rate for the Sarasota Bay dolphin population might be depressing the potential population growth rate. However, our predictions are limited both by model naivety and parameter uncertainty. We emphasize the need for more data collection on the relationship between maternal blubber PCB levels and calf survivorship, the annual accumulation of PCBs in the blubber of females, and the transfer of PCBs to the calf through the placenta and during lactation. Such data require continued efforts directed toward long-term studies of known individuals in wild and semi-wild populations

Avoidance of wind farms by harbour seals is limited to pile driving activities

DJFR, GH, VMJ and BM were funded by the UK Department of Energy and Climate Change (DECC) as part of their Offshore Energy Strategic Environmental Assessment programme. DT and GH were also funded by NERC/Defra EBAO NE/J004243/1. ELJ was funded under Scottish Government grant MMSS001/01. This work was also supported by National Capability funding from the Natural Environment Research Council to SMRU (grant no. SMRU1001). Tags and their deployment in the Thames in 2006 and The Wash were funded by DECC. Tags and their deployment in the Thames in 2012 were commissioned by Zoological Society London, with funding from BBC Wildlife Fund and Sita Trust.1. As part of global efforts to reduce dependence on carbon-based energy sources there has been a rapid increase in the installation of renewable energy devices. The installation and operation of these devices can result in conflicts with wildlife. In the marine environment, mammals may avoid wind farms that are under construction or operating. Such avoidance may lead to more time spent travelling or displacement from key habitats. A paucity of data on at-sea movements of marine mammals around wind farms limits our understanding of the nature of their potential impacts. 2. Here, we present the results of a telemetry study on harbour seals Phoca vitulina in The Wash, south-east England, an area where wind farms are being constructed using impact pile driving. We investigated whether seals avoid wind farms during operation, construction in its entirety, or during piling activity. The study was carried out using historical telemetry data collected prior to any wind farm development and telemetry data collected in 2012 during the construction of one wind farm and the operation of another. 3. Within an operational wind farm, there was a close-to-significant increase in seal usage compared to prior to wind farm development. However, the wind farm was at the edge of a large area of increased usage, so the presence of the wind farm was unlikely to be the cause. 4. There was no significant displacement during construction as a whole. However, during piling, seal usage (abundance) was significantly reduced up to 25 km from the piling activity; within 25 km of the centre of the wind farm, there was a 19 to 83% (95% confidence intervals) decrease in usage compared to during breaks in piling, equating to a mean estimated displacement of 440 individuals. This amounts to significant displacement starting from predicted received levels of between 166 and 178 dB re 1 μPa(p·p). Displacement was limited to piling activity; within 2 h of cessation of pile driving, seals were distributed as per the non-piling scenario. 5. Synthesis and applications. Our spatial and temporal quantification of avoidance of wind farms by harbour seals is critical to reduce uncertainty and increase robustness in environmental impact assessments of future developments. Specifically, the results will allow policymakers to produce industry guidance on the likelihood of displacement of seals in response to pile driving; the relationship between sound levels and avoidance rates; and the duration of any avoidance, thus allowing far more accurate environmental assessments to be carried out during the consenting process. Further, our results can be used to inform mitigation strategies in terms of both the sound levels likely to cause displacement and what temporal patterns of piling would minimize the magnitude of the energetic impacts of displacement.Publisher PDFPeer reviewe

Patterns of space use in sympatric marine colonial predators reveals scales of spatial partitioning

E.L.J. and D.J.F.R. were funded under Scottish Government grant MMSS001/01. D.J.F.R. was funded by the UK Department of Energy and Climate Change (DECC) as part of their Offshore Energy Strategic Environmental Assessment programme. S.S. was part-funded by the EU MYFISH project.Species distribution maps can provide important information to focus conservation efforts and enable spatial management of human activities. Two sympatric marine predators, grey seals Halichoerus grypus and harbour seals Phoca vitulina have overlapping ranges on land and at sea but contrasting population dynamics around Britain: whilst grey seals have generally increased, harbour seals have shown significant regional declines. We analysed two decades of at-sea movement data and terrestrial count data from these species to produce high resolution, broad-scale maps of distribution and associated uncertainty to inform conservation and management. Our results showed that grey seals use offshore areas connected to their haul-out sites by prominent corridors and harbour seals primarily stay within 50km of the coastline. Both species show fine-scale offshore spatial segregation off the east coast of Britain and broad-scale partitioning off western Scotland. These results illustrate that for broad-scale marine spatial planning, the conservation needs of harbour seals (primarily inshore, the exception being selected offshore usage areas) are different from those of grey seals (up to 100km offshore and corridors connecting these areas to haul-out sites). More generally, our results illustrate the importance of detailed knowledge of marine predator distributions to inform marine spatial planning; for instance, spatial prioritisation is not necessarily the most effective spatial planning strategy even when conserving species with similar taxonomy.Peer reviewe