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Epigenetic Applications in Adverse Outcome Pathways and Chemical Risk Evaluation
Sputtering of Oxygen Ice by Low Energy Ions
Naturally occurring ices lie on both interstellar dust grains and on
celestial objects, such as those in the outer solar system. These ices are
continu- ously subjected to irradiation by ions from the solar wind and/or
cosmic rays, which modify their surfaces. As a result, new molecular species
may form which can be sputtered off into space or planetary atmospheres. We
determined the experimental values of sputtering yields for irradiation of
oxygen ice at 10 K by singly (He+, C+, N+, O+ and Ar+) and doubly (C2+, N2+ and
O2+) charged ions with 4 keV kinetic energy. In these laboratory experiments,
oxygen ice was deposited and irradiated by ions in an ultra high vacuum chamber
at low temperature to simulate the environment of space. The number of
molecules removed by sputtering was observed by measurement of the ice
thickness using laser interferometry. Preliminary mass spectra were taken of
sputtered species and of molecules formed in the ice by temperature programmed
desorption (TPD). We find that the experimental sputtering yields increase
approximately linearly with the projectile ion mass (or momentum squared) for
all ions studied. No difference was found between the sputtering yield for
singly and doubly charged ions of the same atom within the experimental
uncertainty, as expected for a process dominated by momentum transfer. The
experimental sputter yields are in good agreement with values calculated using
a theoretical model except in the case of oxygen ions. Preliminary studies have
shown molecular oxygen as the dominant species sputtered and TPD measurements
indicate ozone formation.Comment: to be published in Surface Science (2015
Failure of vaccination to prevent outbreaks of foot-and-mouth disease
Outbreaks of foot-and-mouth disease persist in dairy cattle herds in Saudi Arabia despite revaccination at intervals of 4-6 months. Vaccine trials provide data on antibody responses following vaccination. Using this information we developed a mathematical model of the decay of protective antibodies with which we estimated the fraction of susceptible animals at a given time after vaccination. The model describes the data well, suggesting over 95% take with an antibody half-life of 43 days. Farm records provided data on the time course of five outbreaks. We applied a 'SLIR' epidemiological model to these data, fitting a single parameter representing disease transmission rate. The analysis provides estimates of the basic reproduction number R(0), which may exceed 70 in some cases. We conclude that the critical intervaccination interval which would provide herd immunity against FMDV is unrealistically short, especially for heterologous challenge. We suggest that it may not be possible to prevent foot-and-mouth disease outbreaks on these farms using currently available vaccines
Co-Management of COVID-19 and heart failure during the COVID-19 pandemic. lessons learned
The COVID pandemic has brought many new challenges worldwide, which has impacted on patients with chronic conditions. There is an increasing evidence base suggesting an interaction between chronic heart failure (HF) and COVID-19, and in turn the prognostic impact of co-existence of the two conditions. Patients with existing HF appear more prone to develop severe complications on contracting COVID-19, but the exact prevalence in patients with mild symptoms of COVID-19 not requiring hospital admission is poorly investigated. In addition, hospitalization rates for acute HF over the pandemic period appear reduced compared to previous periods. Several key issues remain rather unaddressed and, importantly, a specific algorithm focused on diagnostic differentiation between HF and acute respiratory distress syndrome, a severe complication of COVID-19, is still lacking. Furthermore, recent data suggests potential interaction existing between HF treatment and some anti-viral anti-inflammatory drugs prescribed during the infection, raising some doubts about a universal treatment strategy for all patients with COVID-19. With this manuscript, we aim to review the current literature in this field in light of growing understanding of COVID-19 in the setting of the HF population, its associated morbidity and mortality burden, and the impact on healthcare systems. We hope that this may stimulate a discussion to guarantee a better, more tailored delivery of care for patients with HF in the setting of concomitant COVID-19 infection
Coherent Optimal Control of Multiphoton Molecular Excitation
We give a framework for molecular multiphoton excitation process induced by
an optimally designed electric field. The molecule is initially prepared in a
coherent superposition state of two of its eigenfunctions. The relative phase
of the two superposed eigenfunctions has been shown to control the optimally
designed electric field which triggers the multiphoton excitation in the
molecule. This brings forth flexibility in desiging the optimal field in the
laboratory by suitably tuning the molecular phase and hence by choosing the
most favorable interfering routes that the system follows to reach the target.
We follow the quantum fluid dynamical formulation for desiging the electric
field with application to HBr molecule.Comment: 5 figure
Conjoint analysis of researchers' hidden preferences for bibliometrics, altmetrics, and usage metrics
The amount of annually published scholarly articles is growing steadily, as is the number of indicators through which impact of publications is measured. Little is known about how the increasing variety of available metrics affects researchers' processes of selecting literature to read. We conducted ranking experiments embedded into an online survey with 247 participating researchers, most from social sciences. Participants completed series of tasks in which they were asked to rank fictitious publications regarding their expected relevance, based on their scores regarding six prototypical metrics. Through applying logistic regression, cluster analysis, and manual coding of survey answers, we obtained detailed data on how prominent metrics for research impact influence our participants in decisions about which scientific articles to read. Survey answers revealed a combination of qualitative and quantitative characteristics that researchers consult when selecting literature, while regression analysis showed that among quantitative metrics, citation counts tend to be of highest concern, followed by Journal Impact Factors. Our results suggest a comparatively favorable view of many researchers on bibliometrics and widespread skepticism toward altmetrics. The findings underline the importance of equipping researchers with solid knowledge about specific metrics' limitations, as they seem to play significant roles in researchers' everyday relevance assessments
Maternal B vitamins: effects on offspring weight and DNA methylation at genomically imprinted domains
Abstract Background Inadequate maternal nutrition during early fetal development can create permanent alterations in the offspring, leading to poor health outcomes. While nutrients involved in one-carbon cycle metabolism are important to fetal growth, associations with specific nutrients remain inconsistent. This study estimates associations between maternal vitamins B12, B6 (pyridoxal phosphate [PLP] and 4-pyridoxic acid [PA]), and homocysteine (Hcy) concentrations, offspring weight (birth weight and 3-year weight gain), and DNA methylation at four differentially methylated regions (DMRs) known to be involved in fetal growth and development (H19, MEG3, SGCE/PEG10, and PLAGL1). Methods Study participants (n = 496) with biomarker and birth weight data were enrolled as part of the Newborn Epigenetics STudy. Weight gain data were available for 273 offspring. Among 484 mother-infant pairs, DNA methylation at regulatory sequences of genomically imprinted genes was measured in umbilical cord blood DNA using bisulfite pyrosequencing. We used generalized linear models to estimate associations. Results Multivariate adjusted regression models revealed an inverse association between maternal Hcy concentration and male birth weight (β = −210.40, standard error (SE) = 102.08, p = 0.04). The offspring of the mothers in the highest quartile of B12 experienced lower weight gain between birth and 3 years compared to the offspring of the mothers in the lowest (β = −2203.03, SE = 722.49, p = 0.003). Conversely, maternal PLP was associated with higher weight gain in males; higher maternal PLP concentrations were also associated with offspring DNA methylation levels at the MEG3 DMR (p < 0.01). Conclusions While maternal concentrations of B12, B6, and Hcy do not associate with birth weight overall, they may play an important role in 3-year weight gain. This is the first study to report an association between maternal PLP and methylation at the MEG3 DMR which may be an important epigenetic tag for maternal B vitamin adequacy
Increasing secondary resistance to fluoroquinolones amongst Helicobacter pylori in Western Australia
Background: The Australian Therapeutic Guidelines does not endorse culture and susceptibility testing prior to salvage therapy for Helicobacter pylorieradication. We wished to determine whether this remains appropriate.
Aim: To determine the sensitivity (as minimum inhibitory concentrations, MIC) of H pylorito a range of antibiotics used in salvage therapy over time.
Methods: From 2012 to 2017, gastric or duodenal biopsy samples were obtained from 154 patients receiving H pylorieradication therapy. MIC for amoxicillin, clarithromycin, tetracycline, metronidazole, rifampicin and levofloxacinwere measured using standard laboratory techniques.
Results: A significant increase from zero to 28% in secondary resistance to levofloxacin amongst H. pyloriin Western Australia was noted over the study period. No corresponding trend was seen with the other antibiotics.
Conclusions: These findings suggest that selective use of culture and susceptibility testing may be warranted prior to initiating salvage therapy with levofloxacin
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