Independent Origins of New Sex-Linked Chromosomes in the melanica and robusta Species Groups of Drosophila

<p>Abstract</p> <p>Background</p> <p>Recent translocations of autosomal regions to the sex chromosomes represent important systems for identifying the evolutionary forces affecting convergent patterns of sex-chromosome heteromorphism. Additions to the sex chromosomes have been reported in the <it>melanica </it>and <it>robusta </it>species groups, two sister clades of <it>Drosophila</it>. The close relationship between these two species groups and the similarity of their rearranged karyotypes motivates this test of alternative hypotheses; the rearranged sex chromosomes in both groups are derived through a common origin, or the rearrangements are derived through at least two independent origins. Here we examine chromosomal arrangement in representatives of the <it>melanica </it>and the <it>robusta </it>species groups and test these alternative hypotheses using a phylogenetic approach.</p> <p>Results</p> <p>Two mitochondrial and two nuclear gene sequences were used to reconstruct phylogenetic relationships of a set of nine ingroup species having fused and unfused sex chromosomes and representing a broad sample of both species groups. Different methods of phylogenetic inference, coupled with concurrent cytogenetic analysis, indicate that the hypothesis of independent origins of rearranged sex chromosomes within each species group is significantly more likely than the alternative hypothesis of a single common origin. An estimate tightly constrained around 8 My was obtained for the age of the rearranged sex chromosomes in the <it>melanica </it>group; however, a more loosely constrained estimate of 10–15 My was obtained for the age of the rearrangement in the <it>robusta </it>group.</p> <p>Conclusion</p> <p>Independent acquisition of new chromosomal arms by the sex chromosomes in the <it>melanica </it>and <it>robusta </it>species groups represents a case of striking convergence at the karyotypic level. Our findings indicate that the parallel divergence experienced by newly sex-linked genomic regions in these groups represents an excellent system for studying the tempo of sex chromosome evolution.</p

Electromagnetic properties of non-Dirac particles with rest spin 1/2

We resolve a number of questions related to an analytic description of electromagnetic form factors of non-Dirac particles with the rest spin 1/2. We find the general structure of a matrix antisymmetric tensor operator. We obtain two recurrence relations for matrix elements of finite transformations of the proper Lorentz group and explicit formulas for a certain set of such elements. Within the theory of fields with double symmetry, we discuss writing the components of wave vectors of particles in the form of infinite continued fractions. We show that for $Q^{2} \leq 0.5$ (GeV/c)$^{2}$, where $Q^{2}$ is the transferred momentum squared, electromagnetic form factors that decrease as $Q^{2}$ increases and are close to those experimentally observed in the proton can be obtained without explicitly introducing an internal particle structure.Comment: 18 pages, 2 figure

On the Slow Roll Expansion for Brane Inflation

One possibility for identifying the inflaton in the framework of string theory is that it is a $D$-brane modulus. This option involves a specific, non-canonical form of the kinetic energy -- the Dirac-Born-Infeld action. This note investigates the applicability of the slow roll approximation in inflationary models of this type. To this end the slow roll expansion of Liddle, Parsons and Barrow is derived for the case of the DBI action. The resulting slow roll conditions augment the standard ones valid in the case of canonical kinetic terms. It is also shown that in DBI models inflation does not require that the potential dominate the energy density.Comment: References adde

High-sensitivity troponin I concentrations are a marker of an advanced hypertrophic response and adverse outcomes in patients with aortic stenosis

Aims: High-sensitivity cardiac troponin I (cTnI) assays hold promise in detecting the transition from hypertrophy to heart failure in aortic stenosis. We sought to investigate the mechanism for troponin release in patients with aortic stenosis and whether plasma cTnI concentrations are associated with long-term outcome. Methods and results: Plasma cTnI concentrations were measured in two patient cohorts using a high-sensitivity assay. First, in the Mechanism Cohort, 122 patients with aortic stenosis (median age 71, 67% male, aortic valve area 1.0 ± 0.4 cm2) underwent cardiovascular magnetic resonance and echocardiography to assess left ventricular (LV) myocardial mass, function, and fibrosis. The indexed LV mass and measures of replacement fibrosis (late gadolinium enhancement) were associated with cTnI concentrations independent of age, sex, coronary artery disease, aortic stenosis severity, and diastolic function. In the separate Outcome Cohort, 131 patients originally recruited into the Scottish Aortic Stenosis and Lipid Lowering Trial, Impact of REgression (SALTIRE) study, had long-term follow-up for the occurrence of aortic valve replacement (AVR) and cardiovascular deaths. Over a median follow-up of 10.6 years (1178 patient-years), 24 patients died from a cardiovascular cause and 60 patients had an AVR. Plasma cTnI concentrations were associated with AVR or cardiovascular death HR 1.77 (95% CI, 1.22 to 2.55) independent of age, sex, systolic ejection fraction, and aortic stenosis severity. Conclusions: In patients with aortic stenosis, plasma cTnI concentration is associated with advanced hypertrophy and replacement myocardial fibrosis as well as AVR or cardiovascular death

The investigation of dangerous geological processes resulting in land subsidence while designing the main gas pipeline in South Yakutia

The number of gas main accidents has increased recently due to dangerous geological processes in underdeveloped areas located in difficult geological conditions. The paper analyses land subsidence caused by karst and thermokarst processes in the right of way, reveals the assessment criteria for geological hazards and creates zoning schemes considering the levels of karst and thermorkarst hazards

A geometric bound on F-term inflation

We discuss a general bound on the possibility to realise inflation in any minimal supergravity with F-terms. The derivation crucially depends on the sGoldstini, the scalar field directions that are singled out by spontaneous supersymmetry breaking. The resulting bound involves both slow-roll parameters and the geometry of the K\"ahler manifold of the chiral scalars. We analyse the inflationary implications of this bound, and in particular discuss to what extent the requirements of single field and slow-roll can both be met in F-term inflation.Comment: 14 pages, improved analysis, references added, matches published versio

Testing String Theory with CMB

Future detection/non-detection of tensor modes from inflation in CMB observations presents a unique way to test certain features of string theory. Current limit on the ratio of tensor to scalar perturbations, r=T/S, is r < 0.3, future detection may take place for r > 10^{-2}-10^{-3}. At present all known string theory inflation models predict tensor modes well below the level of detection. Therefore a possible experimental discovery of tensor modes may present a challenge to string cosmology. The strongest bound on r in string inflation follows from the observation that in most of the models based on the KKLT construction, the value of the Hubble constant H during inflation must be smaller than the gravitino mass. For the gravitino mass in the usual range, m_{3/2} < O(1) TeV, this leads to an extremely strong bound r < 10^{-24}. A discovery of tensor perturbations with r > 10^{-3} would imply that the gravitinos in this class of models are superheavy, m_{3/2} > 10^{13} GeV. This would have important implications for particle phenomenology based on string theory.Comment: 13 pages, 2 figure

Constraints on Brane Inflation and Cosmic Strings

By considering simple, but representative, models of brane inflation from a single brane-antibrane pair in the slow roll regime, we provide constraints on the parameters of the theory imposed by measurements of the CMB anisotropies by WMAP including a cosmic string component. We find that inclusion of the string component is critical in constraining parameters. In the most general model studied, which includes an inflaton mass term, as well as the brane-antibrane attraction, values n_s < 1.02 are compatible with the data at 95 % confidence level. We are also able to constrain the volume of internal manifold (modulo factors dependent on the warp factor) and the value of the inflaton field to be less than 0.66M_P at horizon exit. We also investigate models with a mass term. These observational considerations suggest that such models have r < 2*10^-5, which can only be circumvented in the fast roll regime, or by increasing the number of antibranes. Such a value of r would not be detectable in CMB polarization experiment likely in the near future, but the B-mode signal from the cosmic strings could be detectable. We present forecasts of what a similar analysis using PLANCK data would yield and find that it should be possible to rule out G\mu > 6.5*10^-8 using just the TT, TE and EE power spectra.Comment: 11 pages, 3 figures, revtex4, typos corrected, references adde

Brane inflation and the WMAP data: a Bayesian analysis

The Wilkinson Microwave Anisotropy Probe (WMAP) constraints on string inspired ''brane inflation'' are investigated. Here, the inflaton field is interpreted as the distance between two branes placed in a flux-enriched background geometry and has a Dirac-Born-Infeld (DBI) kinetic term. Our method relies on an exact numerical integration of the inflationary power spectra coupled to a Markov-Chain Monte-Carlo exploration of the parameter space. This analysis is valid for any perturbative value of the string coupling constant and of the string length, and includes a phenomenological modelling of the reheating era to describe the post-inflationary evolution. It is found that the data favour a scenario where inflation stops by violation of the slow-roll conditions well before brane annihilation, rather than by tachyonic instability. Concerning the background geometry, it is established that log(v) > -10 at 95% confidence level (CL), where "v" is the dimensionless ratio of the five-dimensional sub-manifold at the base of the six-dimensional warped conifold geometry to the volume of the unit five-sphere. The reheating energy scale remains poorly constrained, Treh > 20 GeV at 95% CL, for an extreme equation of state (wreh ~ -1/3) only. Assuming the string length is known, the favoured values of the string coupling and of the Ramond-Ramond total background charge appear to be correlated. Finally, the stochastic regime (without and with volume effects) is studied using a perturbative treatment of the Langevin equation. The validity of such an approximate scheme is discussed and shown to be too limited for a full characterisation of the quantum effects.Comment: 65 pages, 15 figures, uses iopart. Shortened version, updated references. Matches publication up to appendix B kept on the arXi