Data and code for 'Uncovering a phylogenetic signal in plant biopolymer chemistry: a comparison of sporopollenin isolation approaches for use in palynological research'

R code and FTIR spectral data to recreate all analyses in the paper. Each data file contains the IR spectra for one experimental treatment, plus associated metadata.To run the R code, put all files into one folder, and set this as the working directory in the R session.</p

Sinclair-Waters_et_al_MEC_2017_8581_SNPs

Genepop file containing SNP array data for 141 Atlantic Cod (Gadus morhua) genotyped at 8,581 loci. All SNPs are referred to by their database of Single Nucleotide Polymorphisms (dbSNP) accession numbers (http://www.ncbi.nlm.nih.gov/SNP). Geographic coordinates of sample collection sites can be found in Table 1 of the associated publication

Real-world adjuvant chemotherapy patterns and outcomes among elderly patients with resected early non-small-cell lung cancer in the USA Supplement

Real-world adjuvant chemotherapy patterns and outcomes among elderly patients with resected early non-small-cell lung cancer in the USA Supplement</p

Marey Map plots of SNPs mapped to positions on the 28 <i>F</i>. <i>×ananassa</i> chromosomes vs. their physical positions on the v2.0 <i>F</i>. <i>vesca</i> (<i>Fvb</i>) pseudomolecules.

<p>Linkage sub-group fragments for groups LG5D, LG6C and LG7B have been joined with an artificial gap of 10 cM between fragments to facilitate data visualization.</p

A ddRAD Based Linkage Map of the Cultivated Strawberry, <i>Fragaria xananassa</i>

<div><p>The cultivated strawberry (<i>Fragaria</i> ×<i>ananassa</i> Duch.) is an allo-octoploid considered difficult to disentangle genetically due to its four relatively similar sub-genomic chromosome sets. This has been alleviated by the recent release of the strawberry IStraw90 whole genome genotyping array. However, array resolution relies on the genotypes used in the array construction and may be of limited general use. SNP detection based on reduced genomic sequencing approaches has the potential of providing better coverage in cases where the studied genotypes are only distantly related from the SNP array’s construction foundation. Here we have used double digest restriction-associated DNA sequencing (ddRAD) to identify SNPs in a 145 seedling F₁ hybrid population raised from the cross between the cultivars Sonata (♀) and Babette (♂). A linkage map containing 907 markers which spanned 1,581.5 cM across 31 linkage groups representing the 28 chromosomes of the species. Comparing the physical span of the SNP markers with the <i>F</i>. <i>vesca</i> genome sequence, the linkage groups resolved covered 79% of the estimated 830 Mb of the <i>F</i>. ×<i>ananassa</i> genome. Here, we have developed the first linkage map for <i>F</i>. ×<i>ananassa</i> using ddRAD and show that this technique and other related techniques are useful tools for linkage map development and downstream genetic studies in the octoploid strawberry.</p></div

Summary statistics for the 31 linkage group fragments that comprise the S×B linkage map, including the total number of markers mapped per linkage group, the numbers and proportions of the different segregation classes, the proportion of markers heterozygous in each parental genome, linkage group lengths and the physical distances associated with each group on the v2.0 <i>F</i>. <i>vesca</i> genome sequence.

<p>^*LG physical start: Position of the first mapped marker on the <i>Fvb</i> genome sequence. LG physical end: Position of the last mapped marker on the <i>Fvb</i> sequence. Total physical span: The distance between these markers.</p><p>Summary statistics for the 31 linkage group fragments that comprise the S×B linkage map, including the total number of markers mapped per linkage group, the numbers and proportions of the different segregation classes, the proportion of markers heterozygous in each parental genome, linkage group lengths and the physical distances associated with each group on the v2.0 <i>F</i>. <i>vesca</i> genome sequence.</p

A SNP-based linkage map of a <i>F</i>. <i>×ananassa</i> mapping population derived from the cross ‘Sonata’ <i>×</i> ‘Babette’.

<p>Map distances are given in centi-Morgans (cM), marker colours indicate: Red–markers segregating in the ‘Sonata’ genetic background only; Blue–markers segregating in the ‘Babette’ genetic background only; Black–markers segregating in both genetic backgrounds (1:1:1:1 and 1:2:1 segregations are indicated with bold and underscore respectively).</p

TOB VS STW populations_text

raw dataset with 3980 SNP genotypes for two wild Atlantic salmon populations from the Tobique River and the Stewiacke River in the Bay of Fundy, Canada

Projekt výrobní haly pro výrobu trezorů v KOVOTREND Kopřivnice s.r.o.

Import 20/04/2006Prezenční výpůjčkaVŠB - Technická univerzita Ostrava. Fakulta strojní. Katedra (345) mechanické technologi

Example mainparam STRUCTURE file

These are the specs for performing the hierarchical population structure analyses on the regional groupings. Identical analyses were performed independently for each regional groupings as detailed in the manuscript