Manipulation of ultracold atoms using magnetic and optical fields

The loading and guiding of a launched cloud of cold atoms with the optical dipole force are theoretically and numerically modelled. A far-off resonance trap can be realised using a high power Gaussian mode laser, red-detuned with respect to the principal atomic resonance (Rb 5s-5p). The optimum strategy for loading typically 30% of the atoms from a Magneto optical trap and guiding them vertically through 22 cm is discussed. During the transport the radial size of the cloud is confined to a few hundred microns, whereas the unconfined axial size grows to be approximately 1 cm. It is proposed that the cloud can be focused in three dimensions at the apex of the motion by using a single magnetic impulse to achieve axial focusing. A theoretical study of six current-carrying coil and bar arrangements that generate magnetic lenses is made. An investigation of focusing aberrations show that, for typical experimental parameters, the widely used assumption of a purely harmonic lens is often inaccurate. A new focusing regime is discussed: isotropic 3D focusing of atoms with a single magnetic lens. The baseball lens offers the best possibility for isotropically focusing a cloud of weak-field-seeking atoms in 3D.A pair of magnetic lens pulses can also be used to create a 3D focus (the alternate-gradient method). The two possible pulse sequences are discussed and it is found that they are ideal for loading both 'pancake' and 'sausage’ shaped magnetic/optical microtraps. It is shown that focusing aberrations are considerably smaller for double-impulse magnetic lenses compared to single- impulse magnetic lenses. The thesis concludes by describing the steps taken towards creating a 3D quasi- electrostatic lattice for 85Ilb， using a CՕշ laser. The resulting lattice of trapped atoms will have a low decoherence, and with resolvable lattice sites, it therefore provides a useful system to implement quantum information processing

Diversity in Valuing Social Contact and Risk Tolerance Lead to the Emergence of Homophily in Populations Facing Infectious Threats

How self-organization leads to the emergence of structure in social populations remains a fascinating and open question in the study of complex systems. One frequently observed structure that emerges again and again across systems is that of self-similar community, i.e., homophily. We use a game theoretic perspective to explore a case in which individuals choose affiliation partnerships based on only two factors: the value they place on having social contacts, and their risk tolerance for exposure to threat derived from social contact (e.g., infectious disease, threatening ideas, etc.). We show how diversity along just these two influences are sufficient to cause the emergence of self-organizing homophily in the population. We further consider a case in which extrinsic social factors influence the desire to maintain particular social ties, and show the robustness of emergent homophilic patterns to these additional influences. These results demonstrate how observable population-level homophily may arise out of individual behaviors that balance the value of social contacts against the potential risks associated with those contacts. We present and discuss these results in the context of outbreaks of infectious disease in human populations. Complementing the standard narrative about how social division alters epidemiological risk, we here show how epidemiological risk may deepen social divisions in human populations.Comment: 17 pages, 4 figure

The Possible Transition From Glacial Surge to Ice Stream on Vavilov Ice Cap

An edited version of this paper was published by AGU. Copyright 2019 American Geophysical Union.Surge‐type glaciers typically undergo cyclical flow instability due to mass accumulation; however, some recent glacier surges have caused irreversible ice loss in a short period. At Vavilov Ice Cap, Russia, surge‐like behavior initiated in 2013 and by spring 2019 the ice cap had lost 9.5 Gt of ice (11% mass of the entire basin). Using time series of surface elevation and glacier velocity derived from satellite optical and synthetic‐aperture radar imagery, we identify a shift of flow pattern starting in 2017 when shear margins formed within the grounded marine piedmont fan. Multiple summer speedups correlate with warmer summers during 2015–2019 and suggest that surface melt may access the subglacial environment. Force balance analysis and examination of the Péclet number show that glacier thinning propagated upstream in 2016–2017, and diffusion became a significant dynamic response to thinning perturbations. Our results suggest that the glacier has entered a new ice stream‐like regime

An Empirically Derived Three-Dimensional Laplace Resonance in the Gliese 876 Planetary System

We report constraints on the three-dimensional orbital architecture for all four planets known to orbit the nearby M dwarf Gliese 876 based solely on Doppler measurements and demanding long-term orbital stability. Our dataset incorporates publicly available radial velocities taken with the ELODIE and CORALIE spectrographs, HARPS, and Keck HIRES as well as previously unpublished HIRES velocities. We first quantitatively assess the validity of the planets thought to orbit GJ 876 by computing the Bayes factors for a variety of different coplanar models using an importance sampling algorithm. We find that a four-planet model is preferred over a three-planet model. Next, we apply a Newtonian MCMC algorithm to perform a Bayesian analysis of the planet masses and orbits using an n-body model in three-dimensional space. Based on the radial velocities alone, we find that a 99% credible interval provides upper limits on the mutual inclinations for the three resonant planets ($\Phi_{cb}<6.20^\circ$ for the "c" and "b" pair and $\Phi_{be}<28.5^\circ$ for the "b" and "e" pair). Subsequent dynamical integrations of our posterior sample find that the GJ 876 planets must be roughly coplanar ($\Phi_{cb}<2.60^\circ$ and $\Phi_{be}<7.87^\circ$), suggesting the amount of planet-planet scattering in the system has been low. We investigate the distribution of the respective resonant arguments of each planet pair and find that at least one argument for each planet pair and the Laplace argument librate. The libration amplitudes in our three-dimensional orbital model supports the idea of the outer-three planets having undergone significant past disk migration.Comment: 19 pages, 11 figures, 8 tables. Accepted to MNRAS. Posterior samples available at https://github.com/benelson/GJ87

Double-impulse magnetic focusing of launched cold atoms.

We have theoretically investigated three-dimensional focusing of a launched cloud of cold atoms using a pair of magnetic lens pulses (the alternate-gradient method). Individual lenses focus radially and defocus axially or vice versa. The performance of the two possible pulse sequences are compared and found to be ideal for loading both 'pancake' and 'sausage' shaped magnetic/optical microtraps. It is shown that focusing aberrations are considerably smaller for double-impulse magnetic lenses compared to single-impulse magnetic lenses. An analysis of clouds focused by the double-impulse technique is presented

Tapering practices of New Zealand's elite raw powerlifters

Pritchard, HJ, Tod, DA, Barnes, MJ, Keogh, JW, and McGuigan, MR. Tapering practices of New Zealand's elite raw powerlifters. J Strength Cond Res 30(7): 1796-1804, 2016-The major aim of this study was to determine tapering strategies of elite powerlifters. Eleven New Zealand powerlifters (28.4 ± 7.0 years, best Wilks score of 431.9 ± 43.9 points) classified as elite were interviewed, using semistructured interviews, about their tapering strategies. Interviews were transcribed verbatim and content analyzed. Total training volume peaked 5.2 ± 1.7 weeks from competition while average training intensity (of 1 repetition maximum) peaked 1.9 ± 0.8 weeks from competition. During tapering, volume was reduced by 58.9 ± 8.4% while intensity was maintained (or slightly reduced) and the final weight training session was performed 3.7 ± 1.6 days out from competition. Participants generally stated that tapering was performed to achieve full recovery; that accessory work was removed around 2 weeks out from competition; and deadlifting takes longer to recover from than other lifts. Typically participants stated that trial and error, and changes based on "feel" were the sources of tapering strategies; equipment used and movements performed during tapering are the same as in competition; nutrition was manipulated during the taper (for weight cutting or performance aims); and poor tapering occurred when too long (1 week or more) was taken off training. These results suggest that athletes may benefit from continuing to strength train before important events with reduced volume and maintained intensity. Only exercises that directly assist sports performance should remain in the strength program during tapering, to assist with reductions in fatigue while maintaining/improving strength expression and performance

Escherichia coli isolates from extraintestinal organs of livestock animals harbour diverse virulence genes and belong to multiple genetic lineages

Escherichia coli, the most common cause of bacteraemia in humans in the UK, can also cause serious diseases in animals. However the population structure, virulence and antimicrobial resistance genes of those from extraintestinal organs of livestock animals are poorly characterised. The aims of this study were to investigate the diversity of these isolates from livestock animals and to understand if there was any correlation between the virulence and antimicrobial resistance genes and the genetic backbone of the bacteria and if these isolates were similar to those isolated from humans. Here 39 E. coli isolates from liver (n=31), spleen (n=5) and blood (n=3) of cattle (n=34), sheep (n=3), chicken (n=1) and pig (n=1) were assigned to 19 serogroups with O8 being the most common (n=7), followed by O101, O20 (both n=3) and O153 (n=2). They belong to 29 multi-locus sequence types, 20 clonal complexes with ST23 (n=7), ST10 (n=6), ST117 and ST155 (both n=3) being most common and were distributed among phylogenetic group A (n=16), B1 (n=12), B2 (n=2) and D (n=9). The pattern of a subset of putative virulence genes was different in almost all isolates. No correlation between serogroups, animal hosts, MLST types, virulence and antimicrobial resistance genes was identified. The distributions of clonal complexes and virulence genes were similar to other extraintestinal or commensal E. coli from humans and other animals, suggesting a zoonotic potential. The diverse and various combinations of virulence genes implied that the infections were caused by different mechanisms and infection control will be challenging

Dissecting a Zombie:Joint Analysis of Density and Resistivity Models Reveals Shallow Structure and Possible Sulfide Deposition at Uturuncu Volcano, Bolivia

The recent identification of unrest at multiple volcanoes that have not erupted in over 10 kyr presents an intriguing scientific problem. How can we distinguish between unrest signaling impending eruption after kyr of repose and non-magmatic unrest at a waning volcanic system? After ca. 250 kyr without a known eruption, in recent decades Uturuncu volcano in Bolivia has exhibited multiple signs of unrest, making the classification of this system as “active”, “dormant”, or “extinct” a complex question. Previous work identified anomalous low resistivity zones at &lt;10 km depth with ambiguous interpretations. We investigate subsurface structure at Uturuncu with new gravity data and analysis, and compare these data with existing geophysical data sets. We collected new gravity data on the edifice in November 2018 with 1.5 km spacing, ±15 μGal precision, and ±5 cm positioning precision, improving the resolution of existing gravity data at Uturuncu. This high quality data set permitted both gradient analysis and full 3-D geophysical inversion, revealing a 5 km diameter, positive density anomaly beneath the summit of Uturuncu (1.5–3.5 km depth) and a 20 km diameter arc-shaped negative density anomaly around the volcano (0.5–7.5 depth). These structures often align with resistivity anomalies previously detected beneath Uturuncu, although the relationship is complex, with the two models highlighting different components of a common structure. Based on a joint analysis of the density and resistivity models, we interpret the positive density anomaly as a zone of sulfide deposition with connected brines, and the negative density arc as a surrounding zone of hydrothermal alteration. Based on this analysis we suggest that the unrest at Uturuncu is unlikely to be pre-eruptive. This study shows the value of joint analysis of multiple types of geophysical data in evaluating volcanic subsurface structure at a waning volcanic center

High-resolution definition of the Vibrio cholerae essential gene set with hidden Markov model–based analyses of transposon-insertion sequencing data

The coupling of high-density transposon mutagenesis to high-throughput DNA sequencing (transposon-insertion sequencing) enables simultaneous and genome-wide assessment of the contributions of individual loci to bacterial growth and survival. We have refined analysis of transposon-insertion sequencing data by normalizing for the effect of DNA replication on sequencing output and using a hidden Markov model (HMM)-based filter to exploit heretofore unappreciated information inherent in all transposon-insertion sequencing data sets. The HMM can smooth variations in read abundance and thereby reduce the effects of read noise, as well as permit fine scale mapping that is independent of genomic annotation and enable classification of loci into several functional categories (e.g. essential, domain essential or ‘sick’). We generated a high-resolution map of genomic loci (encompassing both intra- and intergenic sequences) that are required or beneficial for in vitro growth of the cholera pathogen, Vibrio cholerae. This work uncovered new metabolic and physiologic requirements for V. cholerae survival, and by combining transposon-insertion sequencing and transcriptomic data sets, we also identified several novel noncoding RNA species that contribute to V. cholerae growth. Our findings suggest that HMM-based approaches will enhance extraction of biological meaning from transposon-insertion sequencing genomic data

Satellite-derived volume loss rates and glacier speeds for the Juneau Icefield, Alaska

Abstract We provide a high-resolution map of elevation change rates at the Juneau Icefield (JIF), southeastern Alaska, in order to quantify its contribution to sea-level rise between 2000 and 2009/2013. We also produce the first high-resolution map of ice speeds at the JIF, which we use to constrain flux and look for acceleration. We calculate using stacked digital elevation models (DEMs) from the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) instrument and the Shuttle Radar Topography Mission (SRTM), taking into account SRTM C-band penetration via comparison with SRTM X-band elevations. Overall, the JIF is losing mass less rapidly (0.13 ± 0.12 m w.e. a –1 ) than other Alaskan icefields (0.79 m w.e. a –1 ). We determine glacier speeds using pixel-tracking on optical image pairs acquired from 2001 to 2010 by ASTER, from radar image pairs acquired between 2007 and 2011 and from radar interferometry in 1995. We detect seasonal speed variations but no interannual acceleration, ruling out dynamics as the cause of the observed thinning. Thinning must therefore be due to the documented warming in the region. Flux measurements confirm this for Mendenhall Glacier, showing that calving constitutes only 2.5–5% of mass loss there