Phytochrome gene diversity

The structures and functions of the phytochrome apoprotein genes (the PHY genes), their diversity across the plant kingdom, and their evolution are central concerns in the study of red-light sensing in plants. We summarize here recent advances in two areas relating to these topics: (1) the characteristics of the PHY gene family in Arabidopsis thaliana, the higher plant species for which the most extensive information on these genes is available, and (2) the similarity relationships, phylogeny, and evolutionary implications of PHY gene sequences and partial sequences which have been described from various plants. Together, these two areas of study, one directed at understanding in detail the phytochromes present in a single species and the other directed at a much broader understanding of PHY gene relatedness and distribution, are producing an increasingly clear picture of the diversity and evolution of plant red-light photoreceptors. Moreover, they suggest that the complexity of the phytochrome family has increased as land plants have evolved novel morphologies

The phytochrome gene family in grasses (Poaceae): A phylogeny and evidence that grasses have a subset of the loci found in dicot angiosperms

The phytochrome nuclear gene family encodes photoreceptor proteins that mediate developmental responses to red and far red light throughout the life of the plant. From studies of the dicot flowering plant Arabidopsis, the family has been modeled as comprising five loci, PHYA-PHYE. However, it has been shown recently that the Arabidopsis model may not completely represent some flowering plant groups because additional PHY loci related to PHYA and PHYB of Arabidopsis apparently have evolved independently several times in dicots, and monocot flowering plants may lack orthologs of PHYD and PHYE of Arabidopsis. Nonetheless, the phytochrome nucleotide data were informative in a study of organismal evolution because the loci occur as single copy sequences and appear to be evolving independently. We have continued our investigation of the phytochrome gene family in flowering plants by sampling extensively in the grass family. The phytochrome nuclear DNA data were cladistically analyzed to address the following questions: (1) Are the data consistent with a pattern of differential distribution of phytochrome genes among monocots and higher dicots, with homologs of PHYA, B, C, D, and E present in higher dicots, but of just PHYA, B, and C in monocots, and (2) what phylogenetic pattern within Poaceae do they reveal? Results of these analyses, and of Southern blot experiments, are consistent with the observation that the phytochrome gene family in grasses comprises the same subset of loci detected in other monocots. Furthermore, for studies of organismal phylogeny in the grass family, the data are shown to provide significant support for relationships that are just weakly resolved by other data sets

Time-dependent Circulation Flows: Iron Enrichment in Cooling Flows with Heated Return Flows

We describe a new type of dynamical model for hot gas in galaxy groups and clusters in which gas moves simultaneously in both radial directions. Circulation flows are consistent with (1) the failure to observe cooling gas in X-ray spectra, (2) multiphase gas observed near the centers of these flows and (3) the accumulation of iron in the hot gas from Type Ia supernovae in the central galaxy. Dense inflowing gas cools, producing a positive central temperature gradient, as in normal cooling flows. Bubbles of hot, buoyant gas flow outward. Circulation flows eventually cool catastrophically if the outward flowing gas transports mass but no heat; to maintain the circulation both mass and energy must be supplied to the inflowing gas over a large volume, extending to the cooling radius. The rapid radial recirculation of gas produces a flat central core in the gas iron abundance, similar to many observations. We believe the circulation flows described here are the first gasdynamic, long-term evolutionary models that are in good agreement with all essential features observed in the hot gas: little or no gas cools as required by XMM spectra, the gas temperature increases outward near the center, and the gaseous iron abundance is about solar near the center and decreases outward.Comment: 17 pages (emulateapj5) with 6 figures; accepted by The Astrophysical Journa

Regulation of activin type I receptor function by phosphorylation of residues outside the GS domain

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/117133/1/feb2s0014579397014993.pd

Analytic structure and power-series expansion of the Jost function for the two-dimensional problem

For a two-dimensional quantum mechanical problem, we obtain a generalized power-series expansion of the S-matrix that can be done near an arbitrary point on the Riemann surface of the energy, similarly to the standard effective range expansion. In order to do this, we consider the Jost-function and analytically factorize its momentum dependence that causes the Jost function to be a multi-valued function. The remaining single-valued function of the energy is then expanded in the power-series near an arbitrary point in the complex energy plane. A systematic and accurate procedure has been developed for calculating the expansion coefficients. This makes it possible to obtain a semi-analytic expression for the Jost-function (and therefore for the S-matrix) near an arbitrary point on the Riemann surface and use it, for example, to locate the spectral points (bound and resonant states) as the S-matrix poles. The method is applied to a model simlar to those used in the theory of quantum dots.Comment: 42 pages, 9 figures, submitted to J.Phys.

Coherent States for the Non-Linear Harmonic Oscillator

Wave packets for the Quantum Non-Linear Oscillator are considered in the Generalized Coherent State framerwork. To first order in the non-linearity parameter the Coherent State behaves very similarly to its classical counterpart. The position expectation value oscillates in a simple harmonic manner. The energy-momentum uncertainty relation is time independent as in a harmonic oscillator. Various features, (such as the Squeezed State nature), of the Coherent State have been discussed

NLO-QCD Corrections to Dilepton Production in the Randall-Sundrum Model

The dilepton production process at hadron colliders in the Randall-Sundrum (RS) model is studied at next-to-leading order in QCD. The NLO-QCD corrections have been computed for the virtual graviton exchange process in the RS model, in addition to the usual gamma, Z-mediated processes of standard Drell-Yan. K-factors for the cross-sections at the LHC and Tevatron for differential in the invariant mass, Q, and the rapidity, Y, of the lepton pair are presented. We find the K-factors are large over substantial regions of the phase space.Comment: 24 pages, 12 figure

Policy issues and actors

Detention without trial can be a formidable government weapon against political opponents. In South Africa this weapon has been fashioned into a multiple warhead. There are currently seven security law detention provisions on the statute book, of which one is dormant but can be activated by the State President. Non security law detention, for example detention under drug laws, will not be discussed in this paper. While the seven detention laws are of varying severity and serve different purposes, they are best classified and explained under two main categories or groups - preventive detention and pre-trial detention