Proteome analysis of the UVB-resistant marine bacterium <i>Photobacterium angustum</i> S14

The proteome of the marine bacterium Photobacterium angustum S14 was exposed to UVB and analyzed by the implementation of both the post-digest ICPL labeling method and 2D-DIGE technique using exponentially growing cells. A total of 40 and 23 proteins were quantified in all replicates using either the ICPL or 2D-DIGE methods, respectively. By combining both datasets from 8 biological replicates (4 biological replicates for each proteomics technique), 55 proteins were found to respond significantly to UVB radiation in P. angustum. A total of 8 UVB biomarkers of P. angustum were quantified in all replicates using both methods. Among them, the protein found to present the highest increase in abundance (almost a 3-fold change) was RecA, which is known to play a crucial role in the so-called recombinational repair process. We also observed a high number of antioxidants, transport proteins, metabolism-related proteins, transcription/translation regulators, chaperonins and proteases. We also discuss and compare the UVB response and global protein expression profiles obtained for two different marine bacteria with trophic lifestyles: the copiotroph P. angustum and oligotroph Sphingopyxis alaskensis

Evidence of interspecific plasmid uptake by pathogenic strains of Klebsiella isolated from microplastic pollution on public beaches

Microplastic beads are becoming a common feature on beaches, and there is increasing evidence that such microplastics can become colonised by potential human pathogens. However, whether the concentrations and pathogenicity of these pathogens pose a public health risk are still unclear. Therefore, the aim of this study was to determine realistic environmental concentrations of potential pathogens colonising microplastic beads, and quantify the expression of virulence and antimicrobial resistance genes (ARGs). Microplastic beads were collected from beaches and a culture-dependent approach was used to determine the concentrations of seven target bacteria (Campylobacter spp.; E. coli; intestinal enterococci; Klebsiella spp.; Pseudomonas aeruginosa; Salmonella spp.; Vibrio spp.). All seven target bacteria were detected without the need for a pre-enrichment step; urban sites had higher bacterial concentrations, whilst polymer type had no influence on bacterial concentrations. Klebsiella was the most abundant target bacteria and possessed virulence and ARGs, some of which were present on plasmids from other species, and showed pathogenicity in a Galleria melonella infection model. Our findings demonstrate how pathogen colonised microplastic beads can pose a heightened public health risk at the beach, and highlights the urgency for improved monitoring and enforcement of regulations on the release of microplastics into the environment

Proteome-wide analysis and diel proteomic profiling in the cyanobacterium Arthrospira platensis PCC 8005

The filamentous cyanobacteriumArthrospira platensishas a long history of use as a food supply and it has been used by the European Space Agency in the MELiSSA project, an artificial microecosystem which supports life during long-term manned space missions. This study assesses progress in the field of cyanobacterial shotgun proteomics and light/dark diurnal cycles by focusing onArthrospira platensis. Several fractionation workflows including gel-free and gel-based protein/peptide fractionation procedures were used and combined with LC-MS/MS analysis, enabling the overall identification of 1306 proteins, which represents 21% coverage of the theoretical proteome. A total of 30 proteins were found to be significantly differentially regulated under light/dark growth transition. Interestingly, most of the proteins showing differential abundance were related to photosynthesis, the Calvin cycle and translation processes. A novel aspect and major achievement of this work is the successful improvement of the cyanobacterial proteome coverage using a 3D LC-MS/MS approach, based on an immobilized metal affinity chromatography, a suitable tool that enabled us to eliminate the most abundant protein, the allophycocyanin. We also demonstrated that cell growth follows a light/dark cycle inA. platensis. This preliminary proteomic study has highlighted new characteristics of theArthrospira platensisproteome in terms of diurnal regulation

Priorities to inform research on marine plastic pollution in Southeast Asia

This is the final version. Available from Elsevier via the DOI in this record. Southeast Asia is considered to have some of the highest levels of marine plastic pollution in the world. It is therefore vitally important to increase our understanding of the impacts and risks of plastic pollution to marine ecosystems and the essential services they provide to support the development of mitigation measures in the region. An interdisciplinary, international network of experts (Australia, Indonesia, Ireland, Malaysia, the Philippines, Singapore, Thailand, the United Kingdom, and Vietnam) set a research agenda for marine plastic pollution in the region, synthesizing current knowledge and highlighting areas for further research in Southeast Asia. Using an inductive method, 21 research questions emerged under five non-predefined key themes, grouping them according to which: (1) characterise marine plastic pollution in Southeast Asia; (2) explore its movement and fate across the region; (3) describe the biological and chemical modifications marine plastic pollution undergoes; (4) detail its environmental, social, and economic impacts; and, finally, (5) target regional policies and possible solutions. Questions relating to these research priority areas highlight the importance of better understanding the fate of marine plastic pollution, its degradation, and the impacts and risks it can generate across communities and different ecosystem services. Knowledge of these aspects will help support actions which currently suffer from transboundary problems, lack of responsibility, and inaction to tackle the issue from its point source in the region. Being profoundly affected by marine plastic pollution, Southeast Asian countries provide an opportunity to test the effectiveness of innovative and socially inclusive changes in marine plastic governance, as well as both high and low-tech solutions, which can offer insights and actionable models to the rest of the world.Natural Environment Research CouncilNational Research Foundation, Prime Minister’s Office (Singapore

Influence of growth temperature and starvation state on survival and DNA damage induction in the marine bacterium Sphingopyxis alaskensis exposed to UV radiation

While the concept of human development has gained considerable academic and political acceptance, most indicators in this field recorded during the last twenty years slower rates of improvement than over 1960-80, while exhibiting a marked divergence both between and within countries. Improvements mainly benefited the middle and high-income urban groups and favored some regions and countries while the disadvantaged areas, social groups and nations recorded limited or no improvements. These only partially satisfactory trends appear to be related in many countries to a stagnation or decline in household incomes, a rise in their volatility, their increasingly more unequal distribution and growing problems in the international financing of development in poor countries. There is no general evidence, in contrast, that a worsening in the amount and distribution of public social expenditure contributed to the above trends.Apesar do conceito de desenvolvimento ter ganho uma aceitação crescente nos meios académicos e políticos, nos últimos 20 anos muitos indicadores no terreno têm vindo a revelar taxas de crescimento inferiores às dos anos 1960-1980, acentuando-se os desequilíbrios quer no interior dos países, quer entre eles. O crescimento tem beneficiado principalmente os grupos sociais de médio ou elevado rendimento e favorecido apenas algumas regiões e países, enquanto que os grupos sociais, os países e as áreas mais deprimidas não registam progressos assinaláveis. Estes resultados em alguns países parecem estar relacionados com a estagnação ou o declínio do rendimento familiar, a sua crescente volatilidade e desigual distribuição, bem como com a instabilidade do financiamento internacional ao desenvolvimento dos países pobres. Mas, em contrapartida, não existe qualquer prova de que o declínio no valor e distribuição da renda social seja o responsável por essa tendência

Survival of human enteric and respiratory viruses on plastics in soil, freshwater, and marine environments

The public health significance of plastics and microplastics in different environmental matrices has mainly focused on the toxicological effects of human ingestion. But these pollutants can also harbour pathogenic bacteria as the surfaces of plastics in the environment quickly become colonised by microbial biofilm. This novel microbial habitat has been termed the ‘plastisphere’ and could facilitate the survival and dissemination of important bacterial and fungal pathogens. Importantly, however, the role of plastic pollution as a secondary pathway for the transmission of human pathogenic viruses has never been addressed. Due to the high prevalence of both enteric and respiratory viruses in the population and in the environment, there is significant potential for human viruses to become associated with the plastisphere. In this review we critically evaluate current knowledge on the interaction of human enteric and respiratory viruses with plastic surfaces and identify the main environmental conditions and plastic characteristics that could affect virus survival and persistence in the environment. Our hypothesis is that the plastisphere can enhance the adhesion, survival and dissemination of human pathogenic viruses and potentially lead to more effective transfer and transmission of viral diseases within the environment. We identify key research questions needed to more fully assess the potential human health risks associated with viruses on plastic surfaces. These include understanding, (1) the mechanisms of viral attachment to either naked or biofilm-colonised plastic, (2) how the structural characteristics of viruses (e.g., enveloped, or non-enveloped) affect their persistence in the plastisphere, (3) whether the plastisphere offers protection and increases the persistence of infectious viruses in soil, freshwater, and marine environments

Binding, recovery, and infectiousness of enveloped and non-enveloped viruses associated with plastic pollution in surface water

Microplastics in wastewater and surface water rapidly become colonised by microbial biofilm. Such ‘plastisphere’ communities are hypothesised to persist longer and be disseminated further in the environment and may act as a vector for human pathogens, particularly as microplastics entering wastewater treatment plants are exposed to high concentrations of pathogenic bacteria. The potential for human viral pathogens to become associated with the plastisphere has never before been quantified. Here, we have used rotavirus (RV) SA11 (a non-enveloped enteric virus) and the enveloped bacteriophage Phi6 as model viruses to quantify binding and recovery from biofilm-colonised microplastic pellets in three different water treatments (filtered and non-filtered surface water, and surface water with added nutrients). Viruses associated with biofilm-colonised pellets were more stable compared to those remaining in the water. While detection of infectious particles and genome copies of RV remained stable over the 48 h sampling period, Phi6 stability was highly impacted, with reduction values ranging from 2.18 to 3.94 log10. Virus particles were protected against inactivation factors when associated with the biofilm colonising microplastic surfaces, and when there was a high concentration of particulate matter in the liquid phase. Although our results suggest that the presence of an envelope may impair virus interaction with the plastisphere, the ability to recover both enveloped and non-enveloped infectious viruses from colonised microplastic pellets highlights an additional potential public health risk of surface waters becoming contaminated with microplastics, and subsequent human exposure to microplastics in the environment

The primary molecular influences of marine plastisphere formation and function: Novel insights into organism -organism and -co-pollutant interactions

Marine plastic pollution is rapidly colonized by a biofilm of microorganisms associated with the control of biogeochemical cycles, plastic biodegradation, and potentially pathogenic activities. An extensive number of studies have described the taxonomic composition of this biofilm, referred to as the ‘plastisphere’, and previous reviews have reported on the influence of location, plastic type, and plastic-biodegradation ability on plastisphere formation. However, few studies have investigated the metabolic activity of this complex biofilm and how microbial pathogenicity and bioremediation could be regulated in this ecosystem. In this review, we highlight the understudied molecular and abiotic factors influencing plastisphere formation and microbial functioning beyond taxonomic description. In this context, we critically discuss the impacts of (i) organism-organism interaction, (ii) microbial cell wall composition, and (iii) commonly encountered plastic-bound co-pollutants (heavy metals, persistent organic pollutants, UV filters). For the first time, we review the anticipated impact of lipophilic organic UV-filters – found in plastic additives and sunscreens – on the plastisphere due to their reported affinity for plastics, persistence, and co-location at high concentrations in touristic coastal environments. Herein, we integrate the findings of 34 global studies exploring plastisphere composition, 35 studies quantifying co-pollutant concentrations, and draw upon 52 studies of cell -cell and -substrate interaction to deduce the inferred, yet still unknown, metabolic interactions within this niche. Finally, we provide novel future directions for the advancement of functional plastisphere research applying advanced molecular tools to new, and appropriate research questions.‘Output Status: Forthcoming/Available Online’