Religious Relationships with the Environment in a Tibetan Rural Community : Interactions and Contrasts with Popular Notions of Indigenous Environmentalism

Acknowledgments: We thank Beijing Forestry University, our field assistants Tashi Rabden, Pema Dechin, Tsewang Chomtso and Gele Chopel for their invaluable help, the Forest Bureau of Daocheng county for permission and support, and the people of Samdo for their hospitality and participation. The research was funded by the ESRC and the World Pheasant Association. This paper is a contribution to Imperial College’s Grand Challenges in Ecosystems and the Environment initiative. Two anonymous reviewers gave valuable comments on the manuscript.Peer reviewedPublisher PD

Crystal Structures of Influenza A Virus Matrix Protein M1: Variations on a Theme

Matrix protein 1 (M1) of the influenza A virus plays multiple roles in virion assembly and infection. Interest in the pH dependence of M1\u27s multiple functions led us to study the effect of subtle pH changes on M1 structure, resulting in the elucidation of a unique low-pH crystal structure of the N1-165-domain of A/WSN/33 (H1N1) M1 that has never been reported. Although the 2.2 Å crystal structure of M1 N-terminus shows a dimer with the two monomers interacting in a face-to-face fashion at low pH as observed earlier, a 44° rotation of the second monomer has led to a significantly different dimer interface that possibly affects dimer stability. More importantly, while one of the monomers is fully defined, the N-terminal half of the second monomer shows considerable disorder that appears inherent in the protein and is potentially physiologically relevant. Such disorder has not been observed in any other previously reported structure at either low or high pH conditions, despite similar crystallization pH conditions. By comparing our novel N1-165-domain structure with other low-pH or neutral-pH M1 structures, it appears that M1 can energetically access different monomer and dimer conformations, as well as oligomeric states, with varying degree of similarities. The study reported here provides further insights into M1 oligomerization that may be essential for viral propagation and infectivity

A Lagrangian perspective on the lifecycle and cloud radiative effect of deep convective clouds over Africa

The anvil clouds of tropical deep convection have large radiative effects in both the shortwave (SW) and longwave (LW) spectra with the average magnitudes of both over 100 Wm-2. Despite this, due to the opposite sign of these fluxes, the net average of anvil cloud radiative effect (CRE) over the tropics has been found to be neutral. Research into the response of anvil CRE to climate change has primarily focused on the feedbacks of anvil cloud height and anvil cloud area, in particular regarding the LW feedback. However, tropical deep convection over land has a strong diurnal cycle which may couple with the shortwave component of anvil cloud radiative effect. As this diurnal cycle is poorly represented in climate models it is vital to gain a better understanding of how its changes impact anvil CRE. To study the connection between deep convective cloud (DCC) lifecycle and CRE, we investigate the behaviour of both isolated and organised DCCs in a 4-month case study over sub-Saharan Africa (May–August 2016). Using a novel cloud tracking algorithm, we detect and track growing convective cores and their associated anvil clouds using geostationary satellite observations from Meteosat SEVIRI. Retrieved cloud properties and derived broadband radiative fluxes are provided by the CC4CL algorithm. By collecting the cloud properties of the tracked DCCs, we produce a dataset of anvil cloud properties along their lifetimes. While the majority of DCCs tracked in this dataset are isolated, with only a single core, the overall coverage of anvil clouds is dominated by those of clustered, multi-core anvils due to their larger areas and lifetimes. We find that the distribution of anvil cloud CRE of our tracked DCCs has a bimodal distribution. The interaction between the lifecycles of DCCs and the diurnal cycle of insolation results in a wide range of SW anvil CRE, while the LW component remains in a comparatively narrow range of values. The CRE of individual anvil clouds varies widely, with isolated DCCs tending to have large negative or positive CREs while larger, organised systems tend to have CRE closer to zero. Despite this, we find that the net anvil cloud CRE across all tracked DCCs is indeed neutral within our range of uncertainty (0.86 ± 0.91 Wm-2). Changes in the lifecycle of DCCs, such as shifts in the time of triggering, or the length of the dissipating phase, could have large impacts on the SW anvil CRE and lead to complex responses that are not considered by theories of LW anvil CRE feedbacks

Methanol-Driven Oxidative Rearrangement of Biogenic Furans - Enzyme Cascades vs. Photobiocatalysis

The oxidative ring expansion of bio-derived furfuryl alcohols to densely functionalized six-membered O-heterocycles represents an attractive strategy in the growing network of valorization routes to synthetic building blocks out of the lignocellulosic biorefinery feed. In this study, two scenarios for the biocatalytic Achmatowicz-type rearrangement using methanol as terminal sacrificial reagent have been evaluated, comparing multienzymatic cascade designs with a photo-bio-coupled activation pathway.Peer reviewe

How quantitative is metabarcoding: a meta-analytical approach

Metabarcoding has been used in a range of ecological applications such as taxonomic assignment, dietary analysis, and the analysis of environmental DNA. However, after a decade of use in these applications there is little consensus on the extent to which proportions of reads generated corresponds to the original proportions of species in a community. To quantify our current understanding we conducted a structured review and meta‐analysis. The analysis suggests that a weak quantitative relationship may exist between the biomass and sequences produced (slope = 0.52 ±0.34, p<0.01), albeit it with a large degree of uncertainty. None of the tested moderators: sequencing platform type, the number of species used in a trial, or the source of DNA were able to explain the variance. Our current understanding of the factors affecting the quantitative performance of metabarcoding is still limited: additional research is required before metabarcoding can be confidently utilised for quantitative applications. Until then, we advocate the inclusion of mock communities when metabarcoding as this facilitates direct assessment of the quantitative ability of any given study

Towards Symbolic Model-Based Mutation Testing: Combining Reachability and Refinement Checking

Model-based mutation testing uses altered test models to derive test cases that are able to reveal whether a modelled fault has been implemented. This requires conformance checking between the original and the mutated model. This paper presents an approach for symbolic conformance checking of action systems, which are well-suited to specify reactive systems. We also consider nondeterminism in our models. Hence, we do not check for equivalence, but for refinement. We encode the transition relation as well as the conformance relation as a constraint satisfaction problem and use a constraint solver in our reachability and refinement checking algorithms. Explicit conformance checking techniques often face state space explosion. First experimental evaluations show that our approach has potential to outperform explicit conformance checkers.Comment: In Proceedings MBT 2012, arXiv:1202.582

N-body simulations of the Magellanic Stream

A suite of high-resolution N-body simulations of the Magellanic Clouds -- Milky Way system are presented and compared directly with newly available data from the HI Parkes All-Sky Survey (HIPASS). We show that the interaction between Small and Large Magellanic Clouds results in both a spatial and kinematical bifurcation of both the Stream and the Leading Arm. The spatial bifurcation of the Stream is readily apparent in the HIPASS data, and the kinematical bifurcation is also tentatively identified. This bifurcation provides strong support for the tidal disruption origin for the Magellanic Stream. A fiducial model for the Magellanic Clouds is presented upon completion of an extensive parameter survey of the potential orbital configurations of the Magellanic Clouds and the viable initial boundary conditions for the disc of the Small Magellanic Cloud. The impact of the choice of these critical parameters upon the final configurations of the Stream and Leading Arm is detailed.Comment: Accepted by MNRAS, 07 Jun 2006. 14 pages, 14 figures, 3 tables. LaTeX (mn2e.sty). File with decent resolution images (strongly recommended) available at http://astronomy.swin.edu.au/~tconnors/publications/ . References added; distance and HI-LOres difference figures added; clearer figures; discussion added to, but conclusions unchange

Molecular rheometry: direct determination of viscosity in L-o and L-d lipid phases via fluorescence lifetime imaging

Understanding of cellular regulatory pathways that involve lipid membranes requires the detailed knowledge of their physical state and structure. However, mapping the viscosity and diffusion in the membranes of complex composition is currently a non-trivial technical challenge. We report fluorescence lifetime spectroscopy and imaging (FLIM) of a meso-substituted BODIPY molecular rotor localised in the leaflet of model membranes of various lipid compositions. We prepare large and giant unilamellar vesicles (LUVs and GUVs) containing phosphatidylcholine (PC) lipids and demonstrate that recording the fluorescence lifetime of the rotor allows us to directly detect the viscosity of the membrane leaflet and to monitor the influence of cholesterol on membrane viscosity in binary and ternary lipid mixtures. In phase-separated 1,2-dioleoyl-sn-glycero-3-phosphocholine-cholesterol–sphingomyelin GUVs we visualise individual liquid ordered (Lo) and liquid disordered (Ld) domains using FLIM and assign specific microscopic viscosities to each domain. Our study showcases the power of FLIM with molecular rotors to image microviscosity of heterogeneous microenvironments in complex biological systems, including membrane-localised lipid rafts