RNA-binding protein CPEB1 remodels host and viral RNA landscapes.

Host and virus interactions occurring at the post-transcriptional level are critical for infection but remain poorly understood. Here, we performed comprehensive transcriptome-wide analyses revealing that human cytomegalovirus (HCMV) infection results in widespread alternative splicing (AS), shortening of 3' untranslated regions (3' UTRs) and lengthening of poly(A)-tails in host gene transcripts. We found that the host RNA-binding protein CPEB1 was highly induced after infection, and ectopic expression of CPEB1 in noninfected cells recapitulated infection-related post-transcriptional changes. CPEB1 was also required for poly(A)-tail lengthening of viral RNAs important for productive infection. Strikingly, depletion of CPEB1 reversed infection-related cytopathology and post-transcriptional changes, and decreased productive HCMV titers. Host RNA processing was also altered in herpes simplex virus-2 (HSV-2)-infected cells, thereby indicating that this phenomenon might be a common occurrence during herpesvirus infections. We anticipate that our work may serve as a starting point for therapeutic targeting of host RNA-binding proteins in herpesvirus infections

Molecular Cloud Evolution VI. Measuring cloud ages

This article has been published in Monthly Notices of the Royal Astronomical Society © 2018 The Author(s). Published by Oxford University Press on behalf of the Royal Astronomical Society. All rights reserved.In previous contributions, we have presented an analytical model describing the evolution and star formation rate (SFR) of molecular clouds (MCs) undergoing hierarchical gravitational contraction. The cloud’s evolution is characterized by an initial increase in its mass, density, SFR, and star formation efficiency (SFE), as it contracts, followed by a decrease of these quantities as newly formed massive stars begin to disrupt the cloud. The main parameter of the model is the maximum mass reached by the cloud during its evolution. Thus, specifying the instantaneous mass and some other variable completely determines the cloud’s evolutionary stage. We apply the model to interpret the observed scatter in SFEs of the cloud sample compiled by Lada et al. as an evolutionary effect so that, although clouds such as California and Orion A have similar masses, they are in very different evolutionary stages, causing their very different observed SFRs and SFEs. The model predicts that the California cloud will eventually reach a significantly larger total mass than the Orion A cloud. Next, we apply the model to derive estimated ages of the clouds since the time when approximately 25 per cent of their mass had become molecular. We find ages from ∼1.5 to 27 Myr, with the most inactive clouds being the youngest. Further predictions of the model are that clouds with very low SFEs should have massive atomic envelopes constituting the majority of their gravitational mass, and that low-mass clouds (M ∼ 103–104M⊙) end their lives with a mini-burst of star formation, reaching SFRs ∼300–500M⊙ Myr−1. By this time, they have contracted to become compact (∼1 pc) massive star-forming clumps, in general embedded within larger giant molecular clouds.Peer reviewe

Lawson criterion for ignition exceeded in an inertial fusion experiment

For more than half a century, researchers around the world have been engaged in attempts to achieve fusion ignition as a proof of principle of various fusion concepts. Following the Lawson criterion, an ignited plasma is one where the fusion heating power is high enough to overcome all the physical processes that cool the fusion plasma, creating a positive thermodynamic feedback loop with rapidly increasing temperature. In inertially confined fusion, ignition is a state where the fusion plasma can begin "burn propagation" into surrounding cold fuel, enabling the possibility of high energy gain. While "scientific breakeven" (i.e., unity target gain) has not yet been achieved (here target gain is 0.72, 1.37 MJ of fusion for 1.92 MJ of laser energy), this Letter reports the first controlled fusion experiment, using laser indirect drive, on the National Ignition Facility to produce capsule gain (here 5.8) and reach ignition by nine different formulations of the Lawson criterion

Effects On Beam Alignment Due To Neutron-Irradiated CCD Images At The National Ignition Facility

The 192 laser beams in the National Ignition Facility (NIF) are automatically aligned to the target-chamber center using images obtained through charged coupled device (CCD) cameras. Several of these cameras are in and around the target chamber during an experiment. Current experiments for the National Ignition Campaign are attempting to achieve nuclear fusion. Neutron yields from these high energy fusion shots expose the alignment cameras to neutron radiation. The present work explores modeling and predicting laser alignment performance degradation due to neutron radiation effects, and demonstrates techniques to mitigate performance degradation. Camera performance models have been created based on the measured camera noise from the cumulative single-shot fluence at the camera location. We have found that the effect of the neutron-generated noise for all shots to date have been well within the alignment tolerance of half a pixel, and image processing techniques can be utilized to reduce the effect even further on the beam alignment

Geographic variability of nitrate deposition and preservation over the Greenland Ice Sheet

An analysis of 96 snow pit and ice cores distributed over the Greenland ice sheet is used to determine the main drivers of variability in the preserved records of nitrate concentration. The data set provides samples from spatially distributed locations, allowing us to investigate the effect of snow accumulation rate, temperature, and sublimation on nitrate concentration. The mean ice sheet concentration in the dry snow zone (2000 >= mean annual sea level (masl)) is 132 ng g(-1), ranging between 47 and 265 ng g(-1) with a standard deviation of +/-37 ng g(-1). Nitrate flux varies between 1.1 and 14.7 mu g cm(-2) a(-1) with a mean of 4 +/- 2 mu g cm(-2) a(-1). Large-scale spatial variability exists as a result of accumulation gradients, with concentration 5% greater in the northern plateau, yet flux over the northern plateau is 30% lower than the dry snow zone as a whole. While spatially, flux appears to be more dependent on accumulation, preservation of flux shows increasing dependence on concentration with increasing accumulation. The relationship between concentration and accumulation is nonlinear, showing less dependence in the low-accumulation regions versus high-accumulation regions. Accumulation alone is insufficient to account for the observed variability in nitrate flux in the low-accumulation regions, and evidence supports the need for additional components to a transfer function model for nitrate that includes photochemistry, temperature, and sublimation. Spatial variability across the ice sheet is nonuniform, and changes in nitrate concentration have occurred in some regions at a greater rate than others. While the data support that overall the ice sheet acts as an archive of paleoatmospheric concentration despite the effects of postdepositional processing, one needs to consider spatial variables to properly account for trends and variability in the records. This is tested by evaluating past spatial relationships and yields the result that the significant geographic shifts with respect to reactive N concentrations have occurred over the ice sheet in the past century

Influence of North Atlantic Oscillation on anthropogenic transport recorded in northwest Greenland ice cores

Nitrate records from six Greenland ice cores covering the period 1789 to 1995 show a significant correlation in concentration for averaging periods greater than 10 years, as well as an approximately 60% increase in average concentration during the last 75 years. Annual nitrate fluxes contain low-frequency trends driven primarily by changes in concentration, while higher-frequency variability is driven by changes in snow accumulation. Increases in concentration yield nearly 30% higher nitrate flux (2.5 to 3.2 μg m−2 yr−1) and an 11% increase in variability during the 1895 to 1994 period versus the prior 100 years. Nitrate trends in the cores during the last 100 years are also correlated with global nitrate emissions, with a highly significant average r value of 0.93 for the six cores. During the period of anthropogenic influence, nitrate is positively correlated with the North Atlantic Oscillation, while prior to that the correlation is negative, and less significant, suggesting a link between transport of anthropogenic emissions and the North Atlantic Oscillation. Significant preanthropogenic periodicities identified through singular spectrum analysis show decadal variability in the nitrate record leading to shifts as great as 30% from the mean state but none as great as the anthropogenic-driven deviatio

Photoformation of hydroxyl radical on snow grains at Summit, Greenland

We measured the photoformation of hydroxyl radical (OH) on snow grains at Summit, Greenland during the spring and summer. Midday rates of OH formation in the snow phase in the summer range from 130 to , expressed relative to the liquid equivalent volume of snow. Calculated formation rates of snow-grain OH based on the photolysis of hydrogen peroxide and nitrate agree well with our measured rates during summer, indicating that there are probably not other major sources of OH under these conditions. Throughout both the spring and summer, HOOH is by far the dominant source of snow-grain OH; on average, HOOH produces approximately 100 times more OH than does . Rates of OH photoformation have a strong seasonal dependence and increase by approximately a factor of 10 between early spring and summer at midday. The rate of OH photoformation on snow grains decreases rapidly with depth in the snowpack, with approximately 90% of photoformation occurring within the top 10 cm, although OH formation occurs to depths below 20 cm. The formation of OH on snow grains likely initiates a suite of reactions in the snowpack, including the transformation of organic carbon (OC) and oxidation of halides. The reaction of OH with OC probably forms a number of volatile organic compounds (VOCs) that are potentially emitted into the atmospheric boundary layer. Indeed, our measured rates of OH photoformation on snow grains are large enough that they could account for previously reported fluxes of VOCs from the snowpack at Summit, although the relative importance of thermal desorption and photochemical production for most of these VOCs still needs to be determined