Computed tomography data colouring based on photogrammetric images

Nowadays various methods and sensors are available for 3D reconstruction tasks; however, it is still necessary to integrate advantages of different technologies for optimizing the quality 3D models. Computed tomography (CT) is an imaging technique which takes a large number of radiographic measurements from different angles, in order to generate slices of the object, however, without colour information. The aim of this study is to put forward a framework to extract colour information from photogrammetric images for corresponding Computed Tomography (CT) surface data with high precision. The 3D models of the same object from CT and photogrammetry methods are generated respectively, and a transformation matrix is determined to align the extracted CT surface to the photogrammetric point cloud through a coarse-to-fine registration process. The estimated pose information of images to the photogrammetric point clouds, which can be obtained from the standard image alignment procedure, also applies to the aligned CT surface data. For each camera pose, a depth image of CT data is calculated by projecting all the CT points to the image plane. The depth image is in principle should agree with the corresponding photogrammetric image. The points, which cannot be seen from the pose, but are also projected on the depth image, are excluded from the colouring process. This is realized by comparing the range values of neighbouring pixels and finding the corresponding 3D points with larger range values. The same procedure is implemented for all the image poses to obtain the coloured CT surface. Thus, by using photogrammetric images, we achieve a coloured CT dataset with high precision, which combines the advantages from both methods. Rather than simply stitching different data, we deep-dive into the photogrammetric 3D reconstruction process and optimize the CT data with colour information. This process can also provide an initial route and more options for other data fusion processes

Peptide nanofiber scaffolds for multipotent stromal cell culturing

Self-assembled peptide nanofibers are versatile materials providing suitable platforms for regenerative medicine applications. This chapter describes the use of peptide nanofibers as extracellular matrix mimetic scaffolds for two-dimensional (2D) and three-dimensional (3D) multipotent stromal cell culture systems and procedures for in vitro experiments using these scaffolds. Preparation of 2D and 3D peptide nanofiber scaffolds and cell culturing procedures are presented as part of in vitro experiments including cell adhesion, viability, and spreading analysis. Analysis of cellular differentiation on peptide nanofiber scaffolds is described through immunocytochemistry, qRT-PCR, and other biochemical experiments towards osteogenic and chondrogenic lineage. © Springer Science+Business Media New York 2013

Assessment of information value of targeted biopsy and endoscopic removal of colorectal polyps

This research is based on histological investigation of targeted biopsy material and resected polyps’ at 354 patients who applied to National Center of Oncology from 2005 to 2010. All patients underwent targeted biopsy at first with subsequent endoscopic polypectomy and 494 polyps were removed and histologically investigated. The most prevalence type was tubular polyp — 212 (43 %) cases. The rest types of polyps were distributed as follow: tubule-villous type — 125 (25.3 %), villous type — 16 (3.2 %), inflammatory type — 28 (5.7 %), hyperplastic type — 40 (8.1 %), hamartoma type — 21 (4.3 %) cases. In 52 (10.4 %) cases malignant polyps were revealed.Sensitivity of targeted biopsy in iagnostics of dysplasia was 65.1 % while in revealing of malignancy was even lower — just 36.5 %. So we consider performing of endoscopic polypectomy and histological evaluation of resected polyps in all case even after previous targeted biopsy

Electrical Properties of the Layered Single Crystals TlGaSe2 and TlInS2

In the doped crystals TlGaSe2 and TlInS2, using method of temperature dependencies of DC resistance in the temperature range of 100 – 300 K, the phase transitions at the temperatures of 240 – 245 K and 105 – 120 K were observed. The AC conductance measurements at room temperature indicated the hopping mechanism of carrier transport in the studied samples

Electro-plating and characterisation of cadmium sulphide thin films using ammonium thiosulphate as the sulphur source

Cadmium sulphide (CdS) thin films have been successfully prepared from an aqueous electrolyte bath containing CdCl2 and ammonium thiosulphate ((NH4)2S2O3) using electrodeposition technique. The structural, compositional, optical, morphological and electrical properties of these thin films have been characterized using X-ray diffraction (XRD), Raman spectroscopy, energy dispersive X-ray spectroscopy, UV–Vis spectrophotometry, scanning electron microscopy (SEM), atomic force microscopy (AFM), photoelectrochemical cell and D.C. current–voltage (I–V) measurements. The optimum deposition cathodic potential has been observed at 1,455 mV, in a 2-electrode system with respect to carbon anode. Structural analysis using XRD shows a mixture of hexagonal and cubic phases in the as-deposited CdS samples and a phase transformation to the hexagonal structure occurred after heat treatment at 400 °C for 20 min. Optical studies demonstrate an improvement in the band edge, producing 2.42 eV for the band gap of the films after heat treatment. The heat treated CdS thin films show better transmission for wavelengths longer than 500 nm. SEM and AFM show that the heat-treated samples are more uniform, smoother and have larger grain size. Electrical studies confirm that the CdS thin films have n-type electrical conductivity and heat treated CdS thin films have resistivities of the order of 105 Ω cm

The effects of metyrosine on ischemia-reperfusion-induced oxidative ovarian injury in rats: Biochemical and histopathological assessment

Abstract The aim of this study is to investigate the effect of metyrosine on ischemia-reperfusion (I/R) induced ovarian injury in rats in terms of biochemistry and histopathology. Rats were divided into: ovarian I/R (OIR), ovarian I/R+50 mg/kg metyrosine (OIRM) and sham (SG) operations. OIRM group received 50 mg/kg metyrosine one hour before the application of the anesthetic agent, OIR and SG group rats received equal amount of distilled water to be used as a solvent orally through cannula. Following the application of the anesthetic agent, ovaries of OIRM and OIR group rats were subjected to ischemia and reperfusion, each of which took two hours. This biochemical experiment findings revealed high levels of malondialdehyde (MDA) and cyclo-oxygenase-2 (COX-2) and low levels of total glutathione (tGSH), superoxide dismutase (SOD) and cyclo-oxygenase-1 (COX-1) in the ovarian tissue of OIR group, with significant histopathological injury. In metyrosine group, MDA and COX-2 levels were lower than the OIR group whereas tGSH, SOD and COX-1 levels were higher, with slighter histopathological injury. Our experimental findings indicate that metyrosine inhibits oxidative and pro-inflammatory damage associated with ovarian I/R in rats. These findings suggest that metyrosine could be useful in the treatment of ovarian injury associated with I/R

Extracellular matrix mimetic peptide scaffolds for neural stem cell culture and differentiation

Self-assembled peptide nanofibers form three-dimensional networks that are quite similar to fibrous extracellular matrix (ECM) in their physical structure. By incorporating short peptide sequences derived from ECM proteins, these nanofibers provide bioactive platforms for cell culture studies. This protocol provides information about preparation and characterization of self-assembled peptide nanofiber scaffolds, culturing of neural stem cells (NSCs) on these scaffolds, and analysis of cell behavior. As cell behavior analyses, viability and proliferation of NSCs as well as investigation of differentiation by immunocytochemistry, qRT-PCR, western blot, and morphological analysis on ECM mimetic peptide nanofiber scaffolds are described