Unique transcriptional and protein-expression signature in human lung tissue-resident NK cells

Human lung tissue-resident NK cells (trNK cells) are likely to play an important role in host responses towards viral infections, inflammatory conditions and cancer. However, detailed insights into these cells are still largely lacking. Here we show, using RNA sequencing and flow cytometry-based analyses, that subsets of human lung CD69(-)CD16(-) NK cells display hallmarks of tissue-residency, including high expression of CD49a, CD103, and ZNF683, and reduced expression of SELL, S1PR5, and KLF2/3. CD49a(+)CD16(-) NK cells are functionally competent, and produce IFN-gamma, TNF, MIP-1 beta, and GM-CSF. After stimulation with IL-15, they upregulate perforin, granzyme B, and Ki67 to a similar degree as CD49a(-) CD16(-) NK cells. Comparing datasets from trNK cells in human lung and bone marrow with tissue-resident memory CD8(+) T cells identifies core genes co-regulated either by tissue-residency, cell-type or location. Together, our data indicate that human lung trNK cells have distinct features, likely regulating their function in barrier immunity.Peer reviewe

First indications for reduced mortality of non-target invertebrate benthic megafauna after pulse beam trawling

Two alternative stimulation techniques to reduce mortality in benthic megafauna were tested relative to standard tickler chain beam trawling:longitudinal electrodes (pulse trawl) and longitudinal chains. Longitudinal chains caused higher mortality than pulse trawling in 3 species. Standard trawling gave higher mortality in Echinocardium cordatum than pulse trawling. Between longitudinal chain and standard trawling were no significant differences. This trend in decreasing mortality from longitudinal, to standard and then pulse trawling was confirmed by a similar decline in: i) numbers of significant species mortalities per trawl type, ii) average mortalities, i.e. longitudinal chain caused 41% more mortality than standard trawling and pulse trawling 43% less, iii) pre- and post-trawling community dissimilarities. A significant majority of species showed higher mortalities after longitudinal than after standard trawling and, conversely, lower mortalities after pulse trawling. Trawls with longitudinal chains instead of cross tickler chains increase megafaunal impact. On the contrary, pulse trawling can reduce the impact, although average mortality remains substantial (25%) even in impoverished benthic test assemblages in the southern North Sea. Power, generally was low and reference areas, free of (pulse) trawling, and inhabited by more vulnerable taxa will facilitate higher powered studies on the impact of standard and alternative trawling techniques

Long-term baited lander experiments at a cold-water coral community on galway mound (Belgica Mound Province, NE Atlantic)

A long-term lander employing a baited camera system was developed to study temporal variation in the presence of scavenging fish and invertebrates at a cold-water coral community on Galway Mound (Belgica Mound Province, NE Atlantic). The camera system was tested during two successful long-term deployments for periods of 6 and 12 months respectively. The baited system, consisting of two separate video cameras with infrared lights and a bait dispenser with 24 bait positions, recorded more than 15500 clips of 17 seconds, regularly spread over both periods. New bait, consisting of sardines in oil, was offered at regular time intervals, and attracted scavengers over the whole period of deployment, and especially the crab Chaceon affinis did still eat from it till the end of the deployments. However, the attractiveness for some scavengers, i.e. amphipods, diminished quite quickly. In addition to invertebrate scavengers, namely C. affinis, two other crab species, amphipods, a shrimp and a starfish, also 7 species of fish were recorded near the bait, of which Lepidion eques was by far the most common. Though there was no concrete evidence for seasonal patterns, the observations showed substantial temporal variation in the abundance of several species, especially the crabs C. affinis and Bathynectes maravigna and the fish Phycis blennoides. It is concluded that long-term deployments of such a baited camera system can produce novel data. For instance such a system could be employed for monitoring impacts of disturbances on the deep-sea floor (e.g. mining), as we infer that mobile scavengers will be among the first organisms to show a visible reaction to any chemically and physically (noise, vibrations) alteration of the environment similar to a mine canary

An estimation of the effects of Ensis directus on the transport and burial of silt in the near-shore Dutch coastal zone of the North Sea

Data forming the basis for the publication: An estimation of the effects of Ensis directus on the transport and burial of silt in the near-shore Dutch coastal zone of the North Sea. Journal of Sea Research, Volume 127, September 2017, Pages 95-104. <https://doi.org/10.1016/j.seares.2016.12.001

The ICES North Sea Benthos Project 2000: aims, outcomes and recommendations

The ICES Study Group on the North Sea Benthos Project 2000 undertook to integrate recent (1999–2002) macrobenthic infaunal and environmental data from various national sources. The main aim was to compare the outcome with that of the ICES North Sea Benthos Survey conducted in 1986, to identify any significant changes and their likely causes. In the process, the exercise yielded valuable lessons for the conduct of international collaborative programmes, as well as insights into the utility of a range of interpretational tools. These are timely in view of increasing requirements for periodic sea-wide assessments of quality status to meet international obligations, such as those under OSPAR, ICES, HELCOM, and EU auspices for European waters. This paper provides an overview of the work which, in contrast to the 1986 survey, was more reliant on the opportunistic gathering of existing data from various sources. This presented special challenges for locating willing contributors, and then for combining and managing the sources effectively, a task which was greatly facilitated by dedicated data management support. The range of interpretational approaches aimed at evaluating spatial patterns and changes over time are summarised and the overall conclusions are presented. North Sea benthic communities appear to exhibit traits both of resilience and adaptability over different scales but continue to be structured by predominantly natural forces. Finally, lessons learnt from the ICES NSBP 2000 initiative are reviewed, and recommendations are made for the conduct of future surveys on comparable scales in the North Sea and elsewhere