Fluctuation Bounds For Interface Free Energies in Spin Glasses

We consider the free energy difference restricted to a finite volume for certain pairs of incongruent thermodynamic states (if they exist) in the Edwards-Anderson Ising spin glass at nonzero temperature. We prove that the variance of this quantity with respect to the couplings grows proportionally to the volume in any dimension greater than or equal to two. As an illustration of potential applications, we use this result to restrict the possible structure of Gibbs states in two dimensions.Comment: 19 pages, 0 figure

Analysis of transient phosphorylation-dependent protein-protein interactions in living mammalian cells using split-TEV

Abstract Background Regulated protein-protein interactions (PPIs) are pivotal molecular switches that are important for the regulation of signaling processes within eukaryotic cells. Cellular signaling is altered in various disease conditions and offers interesting options for pharmacological interventions. Constitutive PPIs are usually mediated by large interaction domains. In contrast, stimulus-regulated PPIs often depend on small post-translational modifications and are thus better suited targets for drug development. However, the detection of modification-dependent PPIs with biochemical methods still remains a labour- and material-intensive task, and many pivotal PPIs that are potentially suited for pharmacological intervention most likely remain to be identified. The availability of methods to easily identify and quantify stimulus-dependent, potentially also transient interaction events, is therefore essential. The assays should be applicable to intact mammalian cells, optimally also to primary cells in culture. Results In this study, we adapted the split-TEV system to quantify phosphorylation-dependent and transient PPIs that occur at the membrane and in the cytosol of living mammalian cells. Split-TEV is based on a PPI-induced functional complementation of two inactive TEV protease fragments fused to interaction partners of choice. Genetically encoded transcription-coupled and proteolysis-only TEV reporter systems were used to convert the TEV activity into an easily quantifiable readout. We measured the phosphorylation-dependent interaction between the pro-apoptotic protein Bad and the adapter proteins 14-3-3ε and ζ in NIH-3T3 fibroblasts and in primary cultured neurons. Using split-TEV assays, we show that Bad specifically interacts with 14-3-3 isoforms when phosphorylated by protein kinase Akt-1/PKB at Ser136. We also measured the phosphorylation-dependent Bad/14-3-3 interactions mediated by endogenous and transient Akt-1 activity. We furthermore applied split-TEV assays to measure the phosphorylation-dependent interactions of Neuregulin-1-stimulated ErbB4 receptors with several adapter proteins. Conclusion Split-TEV assays are well suited to measure phosphorylation-dependent and transient PPIs that occur specifically at the membrane and in the cytosol of heterologous and primary cultured mammalian cells. Given the high sensitivity of the split-TEV system, all assays were performed in multi-plate formats and could be adapted for higher throughput to screen for pharmacologically active substances.</p

Enhancement of Entanglement Percolation in Quantum Networks via Lattice Transformations

We study strategies for establishing long-distance entanglement in quantum networks. Specifically, we consider networks consisting of regular lattices of nodes, in which the nearest neighbors share a pure, but non-maximally entangled pair of qubits. We look for strategies that use local operations and classical communication. We compare the classical entanglement percolation protocol, in which every network connection is converted with a certain probability to a singlet, with protocols in which classical entanglement percolation is preceded by measurements designed to transform the lattice structure in a way that enhances entanglement percolation. We analyze five examples of such comparisons between protocols and point out certain rules and regularities in their performance as a function of degree of entanglement and choice of operations.Comment: 12 pages, 17 figures, revtex4. changes from v3: minor stylistic changes for journal reviewer, minor changes to figures for journal edito

Linearity of cortical receptive fields measured with natural sounds

How do cortical neurons represent the acoustic environment? This question is often addressed by probing with simple stimuli such as clicks or tone pips. Such stimuli have the advantage of yielding easily interpreted answers, but have the disadvantage that they may fail to uncover complex or higher-order neuronal response properties. Here, we adopt an alternative approach, probing neuronal responses with complex acoustic stimuli, including animal vocalizations. We used in vivo whole-cell methods in the rat auditory cortex to record subthreshold membrane potential fluctuations elicited by these stimuli. Most neurons responded robustly and reliably to the complex stimuli in our ensemble. Using regularization techniques, we estimated the linear component, the spectrotemporal receptive field (STRF), of the transformation from the sound (as represented by its time-varying spectrogram) to the membrane potential of the neuron. We find that the STRF has a rich dynamical structure, including excitatory regions positioned in general accord with the prediction of the classical tuning curve. However, whereas the STRF successfully predicts the responses to some of the natural stimuli, it surprisingly fails completely to predict the responses to others; on average, only 11% of the response power could be predicted by the STRF. Therefore, most of the response of the neuron cannot be predicted by the linear component, although the response is deterministically related to the stimulus. Analysis of the systematic errors of the STRF model shows that this failure cannot be attributed to simple nonlinearities such as adaptation to mean intensity, rectification, or saturation. Rather, the highly nonlinear response properties of auditory cortical neurons must be attributable to nonlinear interactions between sound frequencies and time-varying properties of the neural encoder

Disorder-Induced Order in Quantum XY Chains

We observe signatures of disorder-induced order in 1D XY spin chains with an external, site-dependent uni-axial random field within the XY plane. We numerically investigate signatures of a quantum phase transition at T=0, in particular an upsurge of the magnetization in the direction orthogonal to the external magnetic field, and the scaling of the block-entropy with the amplitude of this field. Also, we discuss possible realizations of this effect in ultra-cold atom experiments

Digital Border-Crossing: Practical Advice for Digitization Projects that Transcend Borders

This presentation was given at the Kansas Library Association and Missouri Library Association joint conference -- Libraries Without Borders, held in Kansas City, Missouri, September 30 - October 2, 2015.The online environment makes all types of border-crossing possible, including sharing a library’s distinctive resources with audiences around the globe. This breakout session will explore practical advice gleaned from a project at the University of Kansas to digitize extremely rare 19th- and early 20th-century Central American political broadsides in its collections (slated for release in September 2015). In addition to encouraging attendees to think about the ethical dimensions of digitization, this session will focus on providing concrete and scalable advice for progressing through the stages of a digital project. The speakers will offer tips for addressing the selection of materials to be digitized, conservation of the physical artifacts, imaging and metadata creation, and making the most of the technological platforms available at one’s institution