HAART in HIV+ naive elderly patients: immuno-virological response and clinical outcome

Purpose of the study Elderly patients (≥50 years) are increasing in the HIV population; HAART-related prolonged survival and late diagnosis of new HIV infections are possible reasons of this findings. It is debated whether older patients have a different response to HAART. The aim of this retrospective study was to evaluate efficacy of HAART and clinical outcome in a group of patients ≥50 year in comparison to a control group (<50 years-old)

Spatial heterogeneity of habitat suitability for Rift Valley fever occurrence in Tanzania: an ecological niche modelling approach

Despite the long history of Rift Valley fever (RVF) in Tanzania, extent of its suitable habitat in the country remains unclear. In this study we investigated potential effects of temperature, precipitation, elevation, soil type, livestock density, rainfall pattern, proximity to wild animals, protected areas and forest on the habitat suitability for RVF occurrence in Tanzania. Presence-only records of 193 RVF outbreak locations from 1930 to 2007 together with potential predictor variables were used to model and map the suitable habitats for RVF occurrence using ecological niche modelling. Ground-truthing of the model outputs was conducted by comparing the levels of RVF virus specific antibodies in cattle, sheep and goats sampled from locations in Tanzania that presented different predicted habitat suitability values. Habitat suitability values for RVF occurrence were higher in the northern and central-eastern regions of Tanzania than the rest of the regions in the country. Soil type and precipitation of the wettest quarter contributed equally to habitat suitability (32.4% each), followed by livestock density (25.9%) and rainfall pattern (9.3%). Ground-truthing of model outputs revealed that the odds of an animal being seropositive for RVFV when sampled from areas predicted to be most suitable for RVF occurrence were twice the odds of an animal sampled from areas least suitable for RVF occurrence (95% CI: 1.43, 2.76, p < 0.001). The regions in the northern and central-eastern Tanzania were more suitable for RVF occurrence than the rest of the regions in the country. The modelled suitable habitat is characterised by impermeable soils, moderate precipitation in the wettest quarter, high livestock density and a bimodal rainfall pattern. The findings of this study should provide guidance for the design of appropriate RVF surveillance, prevention and control strategies which target areas with these characteristics

Fungal Planet description sheets: 868-950

Novel species of fungi described in this study include those from various countries as follows: Australia, Chaetomella pseudocircinoseta and Coniella pseudodiospyri on Eucalyptus microcorys leaves, Cladophialophora eucalypti, Teratosphaeria dunnii and Vermiculariopsiella dunnii on Eucalyptus dunnii leaves, Cylindrium grande and Hypsotheca eucalyptorum on Eucalyptus grandis leaves, Elsinoe salignae on Eucalyptus saligna leaves, Marasmius lebeliae on litter of regenerating subtropical rainforest, Phialoseptomonium eucalypti (incl. Phialoseptomonium gen. nov.) on Eucalyptus grandis × camaldulensis leaves, Phlogicylindrium pawpawense on Eucalyptus tereticornis leaves, Phyllosticta longicauda as an endophyte from healthy Eustrephus latifolius leaves, Pseudosydowia eucalyptorum on Eucalyptus sp. leaves, Saitozyma wallum on Banksia aemula leaves, Teratosphaeria henryi on Corymbia henryi leaves. Brazil, Aspergillus bezerrae, Backusella azygospora, Mariannaea terricola and Talaromyces pernambucoensis from soil, Calonectria matogrossensis on Eucalyptus urophylla leaves, Calvatia brasiliensis on soil, Carcinomyces nordestinensis on Bromelia antiacantha leaves, Dendryphiella stromaticola on small branches of an unidentified plant, Nigrospora brasiliensis on Nopalea cochenillifera leaves, Penicillium alagoense as a leaf endophyte on a Miconia sp., Podosordaria nigrobrunnea on dung, Spegazzinia bromeliacearum as a leaf endophyte on Tilandsia catimbauensis, Xylobolus brasiliensis on decaying wood. Bulgaria, Kazachstania molopis from the gut of the beetle Molops piceus. Croatia, Mollisia endocrystallina from a fallen decorticated Picea abies tree trunk. Ecuador, Hygrocybe rodomaculata on soil. Hungary, Alfoldia vorosii (incl.Alfoldia gen. nov.) from Juniperus communis roots, Kiskunsagia ubrizsyi (incl. Kiskunsagia gen. nov.) from Fumana procumbens roots. India, Aureobasidium tremulum as laboratory contaminant, Leucosporidium himalayensis and Naganishia indica from windblown dust on glaciers. Italy, Neodevriesia cycadicola on Cycas sp. leaves, Pseudocercospora pseudomyrticola on Myrtus communis leaves, Ramularia pistaciae on Pistacia lentiscus leaves, Neognomoniopsis quercina (incl. Neognomoniopsis gen. nov.) on Quercus ilex leaves. Japan, Diaporthe fructicola on Passiflora edulis × P. edulis f. flavicarpa fruit, Entoloma nipponicum on leaf litter in a mixed Cryptomeria japonica and Acer spp. forest. Macedonia, Astraeus macedonicus on soil. Malaysia, Fusicladium eucalyptigenum on Eucalyptus sp. twigs, Neoacrodontiella eucalypti (incl. Neoacrodontiella gen. nov.) on Eucalyptus urophylla leaves. Mozambique, Meliola gorongosensis on dead Philenoptera violacea leaflets. Nepal, Coniochaeta dendrobiicola from Dendriobium lognicornu roots. New Zealand, Neodevriesia sexualis and Thozetella neonivea on Archontophoenix cunninghamiana leaves. Norway, Calophoma sandfjordenica from a piece of board on a rocky shoreline, Clavaria parvispora on soil, Didymella finnmarkica from a piece of Pinus sylvestris driftwood. Poland, Sugiyamaella trypani from soil. Portugal, Colletotrichum feijoicola from Acca sellowiana. Russia, Crepidotus tobolensis on Populus tremula debris, Entoloma ekaterinae, Entoloma erhardii and Suillus gastroflavus on soil, Nakazawaea ambrosiae from the galleries of Ips typographus under the bark of Picea abies. Slovenia, Pluteus ludwigii on twigs of broadleaved trees. South Africa, Anungitiomyces stellenboschiensis (incl. Anungitiomyces gen. nov.) and Niesslia stellenboschiana on Eucalyptus sp. leaves, Beltraniella pseudoportoricensis on Podocarpus falcatus leaf litter, Corynespora encephalarti on Encephalartos sp. leaves, Cytospora pavettae on Pavetta revoluta leaves, Helminthosporium erythrinicola on Erythrina humeana leaves, Helminthosporium syzygii on a Syzygium sp. barkcanker, Libertasomyces aloeticus on Aloe sp. leaves, Penicillium lunae from Musa sp. fruit, Phyllosticta lauridiae on Lauridia tetragona leaves, Pseudotruncatella bolusanthi (incl. Pseudotruncatellaceae fam. nov.) and Dactylella bolusanthi on Bolusanthus speciosus leaves. Spain, Apenidiella foetida on submerged plant debris, Inocybe grammatoides on Quercus ilex subsp. ilex forest humus, Ossicaulis salomii on soil, Phialemonium guarroi from soil. Thailand, Pantospora chromolaenae on Chromolaena odorata leaves. Ukraine, Cadophora helianthi from Helianthus annuus stems. USA, Boletus pseudopinophilus on soil under slash pine, Botryotrichum foricae, Penicillium americanum and Penicillium minnesotense from air. Vietnam, Lycoperdon vietnamense on soil. Morphological and culture characteristics are supported by DNA barcodes

Fungal planet description sheets: 868–950

Novel species of fungi described in this study include those from various countries as follows: Australia, Chaetomella pseudocircinoseta and Coniella pseudodiospyri on Eucalyptus microcorys leaves, Cladophialophora eucalypti, Teratosphaeria dunnii and Vermiculariopsiella dunnii on Eucalyptus dunnii leaves, Cylindrium grande and Hypsotheca eucalyptorum on Eucalyptus grandis leaves, Elsinoe salignae on Eucalyptus saligna leaves, Marasmius lebeliae on litter of regenerating subtropical rainforest, Phialoseptomonium eucalypti (incl. Phialoseptomonium gen. nov.) on Eucalyptus grandis × camaldulensis leaves, Phlogicylindrium pawpawense on Eucalyptus tereticornis leaves, Phyllosticta longicauda as an endophyte from healthy Eustrephus latifolius leaves, Pseudosydowia eucalyptorum on Eucalyptus sp. leaves, Saitozyma wallum on Banksia aemula leaves, Teratosphaeria henryi on Corymbia henryi leaves. Brazil, Aspergillus bezerrae, Backusella azygospora, Mariannaea terricola and Talaromyces pernambucoensis from soil, Calonectria matogrossensis on Eucalyptus urophylla leaves, Calvatia brasiliensis on soil, Carcinomyces nordestinensis on Bromelia antiacantha leaves, Dendryphiella stromaticola on small branches of an unidentified plant, Nigrospora brasiliensis on Nopalea cochenillifera leaves, Penicillium alagoense as a leaf endophyte on a Miconia sp., Podosordaria nigrobrunnea on dung, Spegazzinia bromeliacearum as a leaf endophyte on Tilandsia catimbauensis, Xylobolus brasiliensis on decaying wood. Bulgaria, Kazachstania molopis from the gut of the beetle Molops piceus. Croatia, Mollisia endocrystallina from a fallen decorticated Picea abies tree trunk. Ecuador, Hygrocybe rodomaculata on soil. Hungary, Alfoldia vorosii (incl. Alfoldia gen. nov.) from Juniperus communis roots, Kiskunsagia ubrizsyi (incl. Kiskunsagia gen. nov.) from Fumana procumbens roots. India, Aureobasidium tremulum as laboratory contaminant, Leucosporidium himalayensis and Naganishia indica from windblown dust on glaciers. Italy, Neodevriesia cycadicola on Cycas sp. leaves, Pseudocercospora pseudomyrticola on Myrtus communis leaves, Ramularia pistaciae on Pistacia lentiscus leaves, Neognomoniopsis quercina (incl. Neognomoniopsis gen. nov.) on Quercus ilex leaves. Japan, Diaporthe fructicola on Passiflora edulis × P. edulis f. flavicarpa fruit, Entoloma nipponicum on leaf litter in a mixed Cryptomeria japonica and Acer spp. forest. Macedonia, Astraeus macedonicus on soil. Malaysia, Fusicladium eucalyptigenum on Eucalyptus sp. twigs, Neoacrodontiella eucalypti (incl. Neoacrodontiella gen. nov.) on Eucalyptus urophylla leaves. Mozambique, Meliola gorongosensis on dead Philenoptera violacea leaflets. Nepal, Coniochaeta dendrobiicola from Dendriobium lognicornu roots. New Zealand, Neodevriesia sexualis and Thozetella neonivea on Archontophoenix cunninghamiana leaves. Norway, Calophoma sandfjordenica from a piece of board on a rocky shoreline, Clavaria parvispora on soil, Didymella finnmarkica from a piece of Pinus sylvestris driftwood. Poland, Sugiyamaella trypani from soil. Portugal, Colletotrichum feijoicola from Acca sellowiana. Russia, Crepidotus tobolensis on Populus tremula debris, Entoloma ekaterinae, Entoloma erhardii and Suillus gastroflavus on soil, Nakazawaea ambrosiae from the galleries of Ips typographus under the bark of Picea abies. Slovenia, Pluteus ludwigii on twigs of broadleaved trees. South Africa, Anungitiomyces stellenboschiensis (incl. Anungitiomyces gen. nov.) and Niesslia stellenboschiana on Eucalyptus sp. leaves, Beltraniella pseudoportoricensis on Podocarpus falcatus leaf litter, Corynespora encephalarti on Encephalartos sp. leaves, Cytospora pavettae on Pavetta revoluta leaves, Helminthosporium erythrinicola on Erythrina humeana leaves, Helminthosporium syzygii on a Syzygium sp. bark canker, Libertasomyces aloeticus on Aloe sp. leaves, Penicillium lunae from Musa sp. fruit, Phyllosticta lauridiae on Lauridia tetragona leaves, Pseudotruncatella bolusanthi (incl. Pseudotruncatellaceae fam. nov.) and Dactylella bolusanthi on Bolusanthus speciosus leaves. Spain, Apenidiella foetida on submerged plant debris, Inocybe grammatoides on Quercus ilex subsp. ilex forest humus, Ossicaulis salomii on soil, Phialemonium guarroi from soil. Thailand, Pantospora chromolaenae on Chromolaena odorata leaves. Ukraine, Cadophora helianthi from Helianthus annuus stems. USA, Boletus pseudopinophilus on soil under slash pine, Botryotrichum foricae, Penicillium americanum and Penicillium minnesotense from air. Vietnam, Lycoperdon vietnamense on soil. Morphological and culture characteristics are supported by DNA barcodes

Influence of biostimulant application in containerized Eucalyptus globulus Labill. seedlings after transplanting

The use of biostimulants (amino acid containing protein hydrolysate) in forestry field has re- ceived much less attention so far than in agriculture. Promising evidences were reported in literature with useful application for nursery activities, stimulating early growth and reducing transplanting stress. This study investigates the potential benefits induced by an amino acid-based animal-derived protein hydro- lysate biostimulant (Siapton® by Isagro) in containerized Eucalyptus globulus seedlings following transplant- ing. Foliar and soil drench applications were applied using two different concentrations each (2.5 ml.l−1 and 5.0 ml.l−1 for foliar, 10 ml.l−1 and 20 ml.l−1 for soil). Measures on seedling height, apical shot formation, total aboveground (dry weight of leaves and stem) and belowground biomass (dry weight of roots) 120 days after transplanting were made to quantify the effect on growth. The contrasts analysis on results revealed a positive effect of the biostimulant on many of the measured parameters, especially with foliar application using the lowest concentration (2.5 ml.l−1). The foliar application was overall suggested as more efficient than soil drench also allowing lower inputs (i.e. biostimulant quantity). The main consequence of the treatment was an increased biomass allocation in the stem (above ground biomass) due to a stimu- lated leaves production which might suggest an increased photosynthetic activity and growth. Conversely no influence was detectable on total height of seedlings neither on the collar diameter. The biostimulant treatment on containerized Eucalyptus globulus positively influenced some features of seedlings’ growth after transplanting and the use of biostimulant with foliar application during the hardening phase in the nursery, appears to be a promising technique to potentially improve seedling growth after transplanting. An inter- esting impact from application of biostimulant on biomass accumulation following transplanting was here demonstrated. Anyway, further research to verify the results on different tree species as well as under open field conditions is envisioned

Changes in chicken gut microbiota and antimicrobial resistance genes after amoxicillin and thiamphenicol administration

The aim of this study was to assess the dynamics of microbial communities and antimicrobial resistance genes (ARGs) in the chicken gut following amoxicillin and thiamphenicol treatments and potential co-selection of ARGs. To this purpose, the microbial community composition, using 16S rRNA NGS, and the abundance of ARGs conferring resistance to β-lactams and phenicols, using qPCRs, were determined. Results revealed that the administered antimicrobials did not significantly reduce the gut microbiota diversity, but changed its composition, with taxa (e.g. Gallibacterium and Megamonas) being enriched after treatment and replacing other bacteria (e.g. Streptococcus and Bifidobacterium). Positive correlations were found between ARGs (e.g. cmlA, blaCMY-2, and blaSHV) and the relative abundance of specific taxa (e.g. Lactobacillus and Subdoligranulum). The selective pressure exerted by both amoxicillin and thiamphenicol resulted in an increased abundance of ARGs conferring resistance to β-lactams (e.g. blaTEM-1, blaSHV, and blaCTX-M1-like) and phenicols (e.g. floR and cmlA). These findings, together with the co-occurrence of genes conferring resistance to the two antimicrobial classes (e.g. blaTEM-1 and cmlA), suggest a possible interaction among antimicrobials on resistance emergence, possibly due to the presence of mobile genetic elements (MGEs) carrying multiple resistance determinants

Annual report 2021 on enteric infections and zoonoses

Zogeheten enterale infecties kunnen door verschillende bacteriën, parasieten en virussen worden veroorzaakt. Deze infecties veroorzaken meestal maag-darm klachten, zoals overgeven, buikpijn en/of (bloederige) diarree. Soms kunnen het ernstigere klachten zijn zoals hepatitis, bloedvergiftiging of hersenvliesontsteking. Het RIVM brengt sinds 2020 elk jaar in kaart hoe vaak deze infecties en de ziekteverwekkers in Nederland voorkomen. Dat geeft inzicht hoe ze zich verspreiden. Een deel van de ziekteverwekkers wordt via direct contact met dieren of hun ontlasting op mensen overgedragen. Maar dit gebeurt ook vaak via besmet voedsel of via het milieu (bodem, lucht of oppervlaktewater). Ze kunnen ook van mens op mens worden overgedragen. De ziekteverwekkers Salmonella, Campylobacter en norovirus worden vooral via voedsel overgedragen. In 2021 kwamen deze infecties vaker voor dan in 2020, maar nog niet even vaak als voor de coronapandemie. De stijging in de aantallen komt waarschijnlijk doordat er in 2021 minder coronamaatregelen waren dan in 2020. Zo reisden mensen in 2021 weer vaker naar het buitenland. Evenveel mensen werden ziek van de bacterie Listeria monocytogenes (listeriose). Deze bacterie kan vooral in (gerookte) vis, kaas en langer houdbare vleeswaren zitten. Dat geldt ook voor leptospirose, dat vooral via contact met water en modder wordt opgelopen. Opvallend was dat het aantal infecties met het rotavirus in 2021 weer bijna even hoog was als voor de coronapandemie, vooral bij jonge kinderen. De piek die meestal rond februari te zien, is bleef uit, maar het volgende ‘seizoen’ begon opvallend vroeg, in oktober 2021. Kinderen zijn waarschijnlijk vatbaarder voor een rotavirusinfectie omdat ze sinds het begin van de pandemie minder vaak zijn besmet. In 2021 waren er een aantal opvallende uitbraken van infecties via voedsel. in meerdere landen zijn mensen ziek geworden van Salmonella door Galia meloenen uit Honduras te eten. Daarnaast zijn mensen ziek geworden van Salmonella door eieren te eten van een leghennenbedrijf uit Nederland. Ook was er een uitbraak met Listeria, die waarschijnlijk kwam door het eten van zalm.‘Enteric infections’ is an umbrella term for a diverse group of infections in humans, primarily through the faecal-oral route. These can be caused by a diverse range of bacterial, parasitic and viral pathogens. Enteric infections usually lead to gastrointestinal symptoms such as vomiting, abdominal pain and/or diarrhoea that may or not be bloody. In some cases, these infections lead to serious symptoms such as hepatitis, blood poisoning or meningitis. Some enteric infections spread from farm animals or pets to humans. These are known as zoonoses. For other enteric infections, humans are the only host and they spread from person to person. In both cases, this often occurs through contaminated food, but also through the environment (soil/air/surface water) or direct contact with animals or faeces. In order to monitor the spread of enteric infections, RIVM charts every year how frequently such infections and their causal pathogens occur in the Netherlands. The pathogens Salmonella, Campylobacter and norovirus, which mainly spread through food, occurred more frequently in 2021 than in 2020, but not yet as frequently as before the COVID-19 pandemic. The reduced incidence in 2020 was probably a side effect of non-pharmaceutical interventions to curb the spread of the coronavirus. In general, there were fewer measures in 2021 than in 2020. For example, there was more travel abroad in 2021. This can explain the increase compared to 2020. The number of people who became ill with the bacterium Listeria monocytogenes (listeriosis) remained the same. The Listeria bacterium can mainly be found in (smoked) fish, cheese and meat products with a longer shelf life. This also applies to leptospirosis, which is mainly contracted through contact with water and mud. It was striking that the number of rotavirus infections, which spread from person to person, was almost back to the same level in 2021 as before the COVID-19 pandemic, especially among young children. The usual peak around February 2021 did not occur, but there was a remarkably early start to the next rotavirus season in October 2021. This was probably due to children becoming more susceptible to rotavirus infection again after a period of reduced frequency since the start of the COVID-19 pandemic. In 2021, there were a number of noticeable food-related outbreaks caused multiple illnesses. This concerned an international Salmonella outbreak caused by eating Galia melons from Honduras, and a second Salmonella outbreak traced back to a Dutch egg-laying farm. There was also a Listeria outbreak, with the consumption of salmon as the most likely source