RAPD Analysis of the Genetic Polymorphism in the Collection of Rye Cultivars

In the present study, RAPD-PCR was used to assess genetic diversity of the rye including landrances and new rye cultivars coming from Central Europe and the Union of Soviet Socialist Republics (SUN). Five arbitrary random primers were used to determine RAPD polymorphism in the set of 38 rye genotypes. These primers amplified altogether 43 different DNA fragments with an average number of 8.6 fragments per genotypes. The number of fragments ranged from 7 (RLZ 8, RLZ 9 and RLZ 10) to 12 (RLZ 6). DI and PIC values of all RAPD markers were higher than 0.8 that generally means high level of polymorphism detected between rye genotypes. The dendrogram based on hierarchical cluster analysis using UPGMA algorithm was prepared. The cultivars were grouped into two main clusters. In this experiment, RAPD proved to be a rapid, reliable and practicable method for revealing of polymorphism in the rye cultivars

Locating, and Utilising \u3cem\u3eFestuca Pratensis\u3c/em\u3e Genes for Winter Hardiness for the Future Development of More Persistent High Quality \u3cem\u3eLolium\u3c/em\u3e Cultivars

Genes for freezing-tolerance and winter hardiness were located in Festuca pratensis by QTL analysis and introgression-mapping. QTL for freezing-tolerance on F. pratensis chromosome 4 were orthologous to rice chromosome 3, and Triticeae chromosome 5. Increased energy dissipation during the autumn through a lower maximum quantum yield of photosystem II (PSII) was correlated with improved winter survival. Freezing tolerance in Lolium was achieved by the transfer and subsequent expression of F. pratensis genes from chromosome 4 that govern the expression of a non-photochemical (NPQ) mechanism for the dissipation of excess light energy under low temperature

The QTL Mapping of the important breeding traits in winter triticale (×Triticosecale Wittm.)

The increasing economic importance of triticale (×Triticosecale Wittm.) makes this synthetic hybrid cereal an interesting object of genetic studies. Genomic regions (QTL) of morphological winter triticale traits were determined using the mapping population of 89 doubled haploids lines (DHs) developed from F1 hybrid of cv. ‘Hewo’ and cv. ‘Magnat’ accompanied with the genetic map consisting of 20 linkage groups assigned to the A (7), B (7), and R (6) genomes (total of 3539 DArT, SNP-DArT and SSR markers, length of 4997.4 cM). Five independent experiments were performed in the field and greenhouse controlled conditions. A total of 12 major QTLs located on 2B, 5A, 5R, and 6B chromosomes connected to the stem length, the plant height, the spike length, the number of the productive spikelets per spike, the number of grains per spike, and the thousand kernel weight were identified by a composite interval mapping (CIM)

Genome-Wide Associations of Chlorophyll Fluorescence OJIP Transient Parameters Connected With Soil Drought Response in Barley

One hundred and nine accessions of spring barley seedlings were phenotyped under soil drought conditions. Chlorophyll fluorescence induction (OJIP) parameters, leaf water content, relative turgidity, net assimilation rate (PN), and water use efficiency (WUE) of plants were measured. All the tested lines were genotyped by means of DArT sequencing (DArTseq) technology. For association mapping a 11,780 polymorphic DArTseq and 4,725 DArTseq SNP markers were used. Our results revealed dissimilar patterns of the relationships between OJIP-parameters under control and drought conditions. A high level of correlation between parameters characterizing Photosystem's II (PSII) energy trapping efficiency (Fv/Fm) and photochemical events downstream of PSII reaction center (e.g., Performance Index—PICSo) was observed only in the case of drought-treated plants. Generally, OJIP parameters were correlated with leaf water content (less in control). This correlation was weaker with WUE, and absent with PN. Under drought stress, 6,252 genotype × phenotype associations, which passed false discovery rate (FDR) verification, were found between all the studied phenotypic characteristics (23, including 19 OJIP parameters) and 2,721 markers. On the other hand, only 282 associations passed FDR test in the control. They comprised 22 phenotypic parameters and 205 markers. Probing for gene annotations of sequences was performed for markers associated with Fv/Fm for both drought and control, markers were associated with studied traits in both control and drought, as well as for markers associated with both OJIP and other physiological parameters in drought. Our work allowed us to conclude that drought treatment differentiates the studied lines through the revealing of relationships between water content and the damages to PSII reaction centers or different components of PSII energy transfer chain. Moreover, the former was not connected with net photosynthesis rate

Temporal dynamics of spectral reflectance and vegetation indices during canola crop cycle in southern Brazil

ABSTRACT: The objective of this study was to characterize the variability of spectral reflectance and temporal profiles of vegetation indices associated with nitrogen fertilization, crop cycle periods, and weather conditions of the growing season in canola canopies in southern Brazil. An experiment was carried out during the 2013 and 2014 canola growing seasons at EMBRAPA Trigo, Passo Fundo, state of Rio Grande do Sul, Brazil. The experiment was conducted in a randomized block design with four replications. Five doses of nitrogen top dressing were used as treatments: 10, 20, 40, 80, and 160kg ha-1. Measurements were obtained with the spectroradiometer positioned above the canopy, to construct spectral reflectance curves for canola and establish temporal profiles for several vegetation indices (SR, NDVI, EVI, SAVI, and GNDVI). In addition, data on shoot dry matter were obtained and phenological stages were determined. The spectral reflectance curves of canola were reported to change with canopy growth and development. Temporal profiles of vegetation indices showed two maximum peaks, one before flowering and other after flowering. The indices SR, NDVI, EVI, SAVI, and GNDVI were able to characterize changes in the canola canopy over time, as a function of phenological phases, weather conditions, and nitrogen fertilization, throughout the development cycle. Plant growth and development, variations in crop management, and environmental conditions affect the spectral response of canola

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