The Rose and the Honey Bee

https://digitalcommons.library.umaine.edu/mmb-vp/6143/thumbnail.jp

Switchable Genetic Oscillator Operating in Quasi-Stable Mode

Ring topologies of repressing genes have qualitatively different long-term dynamics if the number of genes is odd (they oscillate) or even (they exhibit bistability). However, these attractors may not fully explain the observed behavior in transient and stochastic environments such as the cell. We show here that even repressilators possess quasi-stable, travelling-wave periodic solutions that are reachable, long-lived and robust to parameter changes. These solutions underlie the sustained oscillations observed in even rings in the stochastic regime, even if these circuits are expected to behave as switches. The existence of such solutions can also be exploited for control purposes: operation of the system around the quasi-stable orbit allows us to turn on and off the oscillations reliably and on demand. We illustrate these ideas with a simple protocol based on optical interference that can induce oscillations robustly both in the stochastic and deterministic regimes.Comment: 24 pages, 5 main figure

Diving behaviour of a reptile (Crocodylus johnstoni) in the wild: Interactions with heart rate and body temperature

The differences in physical properties of air and water pose unique behavioural and physiological demands on semiaquatic animals. The aim of this study was to describe the diving behaviour of the freshwater crocodile Crocodylus johnstoni in the wild and to assess the relationships between diving, body temperature, and heart rate. Time-depth recorders, temperature-sensitive radio transmitters, and heart rate transmitters were deployed on each of six C. johnstoni (4.0-26.5 kg), and data were obtained from five animals. Crocodiles showed the greatest diving activity in the morning (0600-1200 hours) and were least active at night, remaining at the water surface. Surprisingly, activity pattern was asynchronous with thermoregulation, and activity was correlated to light rather than to body temperature. Nonetheless, crocodiles thermoregulated and showed a typical heart rate hysteresis pattern (heart rate during heating greater than heart rate during cooling) in response to heating and cooling. Additionally, dive length decreased with increasing body temperature. Maximum diving length was 119.6 min, but the greatest proportion of diving time was spent on relatively short

Parallel Machines and Algorithms for Discrete-Event Simulations

A number of recent articles have focused on the design of high speed discrete-event simulation (DES) machines for digital logic simulation. These investigations are in response to the enormous costs associated with the simulation of complex (VLSI) digital circuits for logic verification and fault analysis. One approach to reducing simulation costs is to design special purpose digital computers that are tailored to the logic simulation test. This paper is concerned with the architecture of such logic machines. The paper has three principal parts. First, a taxonomy of logic machine architectures is presented. The taxonomy focuses on the central components of the logic simulation algorithms and on architectural alternatives for increasing the speed of the simulation process. It thus represents a basis for discussing and differentiating between proposed architectures and also results in the identification of several new architectures. Although developed for digital logic simulators., the taxonomy can be used for general DES machines. Second, a performance measure is presented which permits evaluation of DES machines. Finally several DES machine designs are described and categorized using the taxonomy

An Efficient Opportunistic Cooperative Diversity Protocol for IEEE 802.11 Networks

Opportunistic cooperation promises to enhance the user experience when streaming media over wireless devices by improving wireless network reliability at the link level. This paper presents DAFMAC, an efficient cooperative diversity partner selection algorithm for IEEE 802.11 devices. Simulation results show DAFMAC provides a significantly higher transmission reliability in poor channel conditions than traditional ARQ techniques without modifying the device hardware. Further analysis shows the low overhead of DAFMAC makes it highly competitive with other proposed cooperative retransmission mechanisms in an ad-hoc network

Boundary node selection algorithms in WSNs

Physical damage and/or node power exhaustion may lead to coverage holes in WSNs. Coverage holes can be directly detected by certain proximate nodes known as boundary nodes (B-nodes). Due to the sensor nodes' redundant deployment and autonomous fault detection, holes are surrounded by a margin of B-nodes (MB-nodes). If all B-nodes in the margin take part in the hole recovery processes, either by increasing their transmission power or by relocating towards region of interest (ROI), the probability of collision, interference, disconnection, and isolation may increase affecting the rest of the network's performance and QoS. Thus, distributed boundary node selection algorithms (BNS-Algorithms) are proposed to address these issues. BNS-algorithms allow B-nodes to self-select based on available 1-hop information extracted from nodes' simple geometrical and statistical features. Our results show that the performance of the proposed distributed BNS-algorithms approaches that of their centralized counterparts. © 2011 IEEE

A Comparative Survey of VANET Clustering Techniques

© 2016 Crown. A vehicular ad hoc network (VANET) is a mobile ad hoc network in which network nodes are vehicles - most commonly road vehicles. VANETs present a unique range of challenges and opportunities for routing protocols due to the semi-organized nature of vehicular movements subject to the constraints of road geometry and rules, and the obstacles which limit physical connectivity in urban environments. In particular, the problems of routing protocol reliability and scalability across large urban VANETs are currently the subject of intense research. Clustering can be used to improve routing scalability and reliability in VANETs, as it results in the distributed formation of hierarchical network structures by grouping vehicles together based on correlated spatial distribution and relative velocity. In addition to the benefits to routing, these groups can serve as the foundation for accident or congestion detection, information dissemination and entertainment applications. This paper explores the design choices made in the development of clustering algorithms targeted at VANETs. It presents a taxonomy of the techniques applied to solve the problems of cluster head election, cluster affiliation, and cluster management, and identifies new directions and recent trends in the design of these algorithms. Additionally, methodologies for validating clustering performance are reviewed, and a key shortcoming - the lack of realistic vehicular channel modeling - is identified. The importance of a rigorous and standardized performance evaluation regime utilizing realistic vehicular channel models is demonstrated