Characterization of the RDC1 Gene Which Encodes the Canine Homolog of a Proposed Human VIP Receptor Expression Does Not Correlate with an Increase in VIP Binding Sites

We have isolated a portion of the canine gene encoding the orphan receptor RDC1 [1]. The complete coding sequence is contained in a single exon, and an intron divides the 5′ untranslated region of RDC1 mRNA. The RDC1 protein is 94% homologous to the gene product of GPRN1, which has been proposed to serve as a VIP receptor when expressed in CHO-K1 and COS-7 cells (Sreedharan, S.P. et al. (1991) Proc. Natl. Acad. Sci. USA 88, 4986–4990). Northern analysis indicates that CHO-K1 cells endogenously express a 2.1 kb RDC1 mRNA. However, while CHO-K1 cells possess detectable low affinity [125I]VIP binding sites, VIP binding is not altered in membranes of CHO-K1 cells expressing varying amounts of the RDC1 gene construct. Further, endogenous VIP binding is not increased by transient expression of RDC1 in COS-7 cells. Taken together, the data suggest that RDC1 is not a canine homolog of the proposed VIP receptor

Dairy farm effluent effects on urine patch nitrous oxide and carbon dioxide emissions

Dairy farm effluent (DFE) comprises animal feces, urine, and wash-down water collected at the milking shed. This is collected daily during the milking season and sprayed onto grazed dairy pastures. Urine patches in grazed pastures make a significant contribution to anthropogenic N₂O emissions. The DFE could potentially mitigate N₂O emissions by influencing the N₂O to dinitrogen (N₂) ratio, since it contains water-soluble carbon (WSC). Alternatively, DFE may enhance N₂O emissions from urine patches. The application of DFE may also provide a substrate for the production of CO₂ in pasture soils. The effects of DFE on the CO₂ and N₂O emissions from urine patches are unknown. Thus a laboratory experiment was performed where repeated DFE applications were made to repacked soil cores. Dairy farm effluent was applied at 0, 7, or 14 d after urine deposition. The urine was applied once on Day 0. Urine contained ¹⁵N-enriched urea. Measurements of N₂O, N₂, and carbon dioxide (CO₂) fluxes, soil pH, and soil inorganic N concentrations were made. After 43 d the DFE had not mitigated N₂O fluxes from urine patches. A small increase in the N₂O flux occurred from the urine-treated soils where DFE was applied 1 wk after urine deposition. The amount of WSC applied in the DFE proved to be insignificant compared with the amount of soil C released as CO₂ following urine application. The priming of soil C in urine patches has implications for the understanding of soil C processes in grazed pasture ecosystems and the budgeting of C within these ecosystems

Cross-taxa congruence, indicators and environmental gradients in soils under agricultural and extensive land management

Important steps in developing reliable bioindicators for soil quality are characterising soil biodiversity and determining the response of its components to environmental factors across a range of land uses and soil types. Baseline data from a national survey in Ireland were used to explore relationships between diversity and composition of micro-organisms (bacteria, fungi, mycorrhiza), and micro-, meso- and macro-fauna (nematodes; mites; earthworms, ants) across a general gradient representing dominant land uses (arable, pasture, rough-grazing, forest and bogland). These diversity data were also linked to soil physico-chemical properties. Differences in diversity and composition of meso- and macro-fauna, but not microbes, were clear between agriculturally-managed (arable and pasture) and extensively-managed (rough-grazing and bogland) soils corresponding to a broad division between ‘mineral’ and ‘organic’ soils. The abundance, richness and composition of nematode and earthworm taxa were significantly congruent with a number of the other groups. Further analysis, using significant indicator species from each group, identified potential target taxa and linked them to soil environmental gradients. This study suggests that there is potential surrogacy between the diversity of key soil taxa groups and that different sets of bioindicators may be most effective under agricultural and extensive land use

Distribution of denitrifying bacterial communities in the stratified water column and sediment–water interface in two freshwater lakes and the Baltic Sea

We have studied the distribution and community composition of denitrifying bacteria in the stratified water column and at the sediment–water interface in lakes Plußsee and Schöhsee, and a near-shore site in the Baltic Sea in Germany. Although environmental changes induced by the stratification of the water column in marine environments are known to affect specific populations of denitrifying bacteria, little information is available for stratified freshwater lakes and brackish water. The aim of the present study was to fill this gap and to demonstrate specific distribution patterns of denitrifying bacteria in specific aquatic habitats using two functional markers for the nitrite reductase (nirK and nirS genes) as a proxy for the communities. The leading question to be answered was whether communities containing the genes nirK and nirS have similar, identical, or different distribution patterns, and occupy the same or different ecological niches. The genes nirK and nirS were analyzed by PCR amplification with specific primers followed by terminal restriction fragment length polymorphism (T-RFLP) and by cloning and sequence analysis. Overall, nirS-denitrifiers were more diverse than nirK-denitrifiers. Denitrifying communities in sediments were clearly different from those in the water column in all aquatic systems, regardless of the gene analyzed. A differential distribution of denitrifying assemblages was observed for each particular site. In the Baltic Sea and Lake Plußsee, nirK-denitrifiers were more diverse throughout the water column, while nirS-denitrifiers were more diverse in the sediment. In Lake Schöhsee, nirS-denitrifiers showed high diversity across the whole water body. Habitat-specific clusters of nirS sequences were observed for the freshwater lakes, while nirK sequences from both freshwater lakes and the Baltic Sea were found in common phylogenetic clusters. These results demonstrated differences in the distribution of bacteria containing nirS and those containing nirK indicating that both types of denitrifiers apparently occupy different ecological niches